RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 C4BP0C0L5 1744 aa19.09■□□□□ 0.65
CCDC88C-207ENST00000554051 RNMTO43148 476 aaKnown RBP19.09■□□□□ 0.65
CCDC88C-207ENST00000554051 LRRC4BQ9NT99 713 aa19.09■□□□□ 0.65
CCDC88C-207ENST00000554051 LOC102724428A0A0B4J2F2 783 aa19.08■□□□□ 0.64
CCDC88C-207ENST00000554051 HTATSF1O43719 755 aaKnown RBP19.08■□□□□ 0.64
CCDC88C-207ENST00000554051 SIK1P57059 783 aa19.08■□□□□ 0.64
CCDC88C-207ENST00000554051 WDR43Q15061 677 aaKnown RBP eCLIP19.08■□□□□ 0.64
CCDC88C-207ENST00000554051 CEMIPQ8WUJ3 1361 aa19.07■□□□□ 0.64
CCDC88C-207ENST00000554051 SIPA1L3O60292 1781 aaPredicted RBP19.07■□□□□ 0.64
CCDC88C-207ENST00000554051 RTF1Q92541 710 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-207ENST00000554051 AKT1S1Q96B36 256 aa19.07■□□□□ 0.64
CCDC88C-207ENST00000554051 ATG3Q9NT62 314 aa19.07■□□□□ 0.64
CCDC88C-207ENST00000554051 ANP32CO43423 234 aa19.06■□□□□ 0.64
CCDC88C-207ENST00000554051 TEFQ10587 303 aa19.06■□□□□ 0.64
CCDC88C-207ENST00000554051 ASAP1Q9ULH1 1129 aa19.06■□□□□ 0.64
CCDC88C-207ENST00000554051 COL5A3P25940 1745 aaPredicted RBP19.05■□□□□ 0.64
CCDC88C-207ENST00000554051 TUBGCP6Q96RT7 1819 aa19.05■□□□□ 0.64
CCDC88C-207ENST00000554051 UBR2Q8IWV8 1755 aa19.05■□□□□ 0.64
CCDC88C-207ENST00000554051 ZNF827Q17R98 1081 aa19.04■□□□□ 0.64
CCDC88C-207ENST00000554051 NFATC2IPQ8NCF5 419 aa19.04■□□□□ 0.64
CCDC88C-207ENST00000554051 FLAD1Q8NFF5 587 aa19.04■□□□□ 0.64
CCDC88C-207ENST00000554051 PHACTR3Q96KR7 559 aa19.04■□□□□ 0.64
CCDC88C-207ENST00000554051 TFCP2L1Q9NZI6 479 aa19.04■□□□□ 0.64
CCDC88C-207ENST00000554051 ATP6V1AP38606 617 aa19.03■□□□□ 0.64
CCDC88C-207ENST00000554051 AK7Q96M32 723 aa19.03■□□□□ 0.64
CCDC88C-207ENST00000554051 PLEKHF1Q96S99 279 aa19.03■□□□□ 0.64
CCDC88C-207ENST00000554051 LMOD3Q0VAK6 560 aa19.02■□□□□ 0.64
CCDC88C-207ENST00000554051 TTC5Q8N0Z6 440 aa19.02■□□□□ 0.64
CCDC88C-207ENST00000554051 SLC16A10Q8TF71 515 aa19.02■□□□□ 0.64
CCDC88C-207ENST00000554051 SPON1Q9HCB6 807 aa19.02■□□□□ 0.64
CCDC88C-207ENST00000554051 KCPQ6ZWJ8 1503 aa19.01■□□□□ 0.63
CCDC88C-207ENST00000554051 TJP1Q07157 1748 aa19.01■□□□□ 0.63
CCDC88C-207ENST00000554051 NFE2L2Q16236 605 aa19.01■□□□□ 0.63
CCDC88C-207ENST00000554051 MTFR1LQ9H019 292 aa19.01■□□□□ 0.63
CCDC88C-207ENST00000554051 LGR6Q9HBX8 967 aa19.01■□□□□ 0.63
CCDC88C-207ENST00000554051 UBR3Q6ZT12 1888 aa19.01■□□□□ 0.63
CCDC88C-207ENST00000554051 CNTNAP4Q9C0A0 1308 aa19■□□□□ 0.63
CCDC88C-207ENST00000554051 DLG5Q8TDM6 1919 aa19■□□□□ 0.63
CCDC88C-207ENST00000554051 RBM42Q9BTD8 480 aaKnown RBP19■□□□□ 0.63
CCDC88C-207ENST00000554051 PNPLA7Q6ZV29 1317 aa19■□□□□ 0.63
CCDC88C-207ENST00000554051 SSFA2P28290 1259 aa18.99■□□□□ 0.63
CCDC88C-207ENST00000554051 VSIG10Q8N0Z9 540 aa18.99■□□□□ 0.63
CCDC88C-207ENST00000554051 IL17REQ8NFR9 667 aa18.99■□□□□ 0.63
CCDC88C-207ENST00000554051 COL24A1Q17RW2 1714 aa18.98■□□□□ 0.63
CCDC88C-207ENST00000554051 KCNQ4P56696 695 aa18.98■□□□□ 0.63
CCDC88C-207ENST00000554051 ADRA2BP18089 450 aa18.97■□□□□ 0.63
CCDC88C-207ENST00000554051 RC3H1Q5TC82 1133 aaKnown RBP18.97■□□□□ 0.63
CCDC88C-207ENST00000554051 RUNDC1Q96C34 613 aa18.97■□□□□ 0.63
CCDC88C-207ENST00000554051 PTCD1O75127 700 aaKnown RBP18.96■□□□□ 0.63
CCDC88C-207ENST00000554051 ITPK1Q13572 414 aa18.96■□□□□ 0.63
CCDC88C-207ENST00000554051 LINC00116Q8NCU8 138 aa18.96■□□□□ 0.63
CCDC88C-207ENST00000554051 PNISRQ8TF01 805 aaKnown RBP18.96■□□□□ 0.63
CCDC88C-207ENST00000554051 ZNF790Q6PG37 636 aa18.95■□□□□ 0.62
CCDC88C-207ENST00000554051 BTBD11A6QL63 1104 aa18.94■□□□□ 0.62
CCDC88C-207ENST00000554051 GNPATO15228 680 aa18.94■□□□□ 0.62
CCDC88C-207ENST00000554051 TEX13AQ9BXU3 409 aaPredicted RBP18.94■□□□□ 0.62
CCDC88C-207ENST00000554051 MCM10Q7L590 875 aa18.93■□□□□ 0.62
CCDC88C-207ENST00000554051 FMNL2Q96PY5 1086 aa18.93■□□□□ 0.62
CCDC88C-207ENST00000554051 RTCBQ9Y3I0 505 aaKnown RBP18.93■□□□□ 0.62
CCDC88C-207ENST00000554051 KDM3BQ7LBC6 1761 aa18.93■□□□□ 0.62
CCDC88C-207ENST00000554051 ZBTB7AO95365 584 aa18.92■□□□□ 0.62
CCDC88C-207ENST00000554051 POLD1P28340 1107 aa18.92■□□□□ 0.62
CCDC88C-207ENST00000554051 SLC4A9Q96Q91 983 aa18.92■□□□□ 0.62
CCDC88C-207ENST00000554051 PPP1R1BQ9UD71 204 aaPredicted RBP18.92■□□□□ 0.62
CCDC88C-207ENST00000554051 HEG1Q9ULI3 1381 aa18.92■□□□□ 0.62
CCDC88C-207ENST00000554051 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-207ENST00000554051 MSH5O43196 834 aa18.91■□□□□ 0.62
CCDC88C-207ENST00000554051 TMPOP42166 694 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-207ENST00000554051 SLC39A6Q13433 755 aa18.91■□□□□ 0.62
CCDC88C-207ENST00000554051 MRS2Q9HD23 443 aa18.91■□□□□ 0.62
CCDC88C-207ENST00000554051 ADAMTS8Q9UP79 889 aa18.91■□□□□ 0.62
CCDC88C-207ENST00000554051 STARD3NLO95772 234 aa18.9■□□□□ 0.62
CCDC88C-207ENST00000554051 RIPK4P57078 832 aa18.9■□□□□ 0.62
CCDC88C-207ENST00000554051 TAF7Q15545 349 aaPredicted RBP18.9■□□□□ 0.62
CCDC88C-207ENST00000554051 COL23A1Q86Y22 540 aaPredicted RBP18.9■□□□□ 0.62
CCDC88C-207ENST00000554051 PDGFDQ9GZP0 370 aaPredicted RBP18.9■□□□□ 0.62
CCDC88C-207ENST00000554051 BABAM1Q9NWV8 329 aa18.9■□□□□ 0.62
CCDC88C-207ENST00000554051 C4AP0C0L4 1744 aa18.9■□□□□ 0.62
CCDC88C-207ENST00000554051 LAMB4A4D0S4 1761 aa18.9■□□□□ 0.62
CCDC88C-207ENST00000554051 RPS6KA4O75676 772 aa18.89■□□□□ 0.61
CCDC88C-207ENST00000554051 CRKLP46109 303 aaKnown RBP18.89■□□□□ 0.61
CCDC88C-207ENST00000554051 CCDC87Q9NVE4 849 aa18.89■□□□□ 0.61
CCDC88C-207ENST00000554051 PHF14O94880 888 aa18.88■□□□□ 0.61
CCDC88C-207ENST00000554051 DNAJC10Q8IXB1 793 aa18.88■□□□□ 0.61
CCDC88C-207ENST00000554051 ZNF496Q96IT1 587 aaPredicted RBP18.88■□□□□ 0.61
CCDC88C-207ENST00000554051 PTGER2P43116 358 aa18.87■□□□□ 0.61
CCDC88C-207ENST00000554051 DCTN1Q14203 1278 aa18.87■□□□□ 0.61
CCDC88C-207ENST00000554051 TRAPPC3LQ5T215 181 aa18.87■□□□□ 0.61
CCDC88C-207ENST00000554051 CCDC146Q8IYE0 955 aa18.87■□□□□ 0.61
CCDC88C-207ENST00000554051 SGIP1Q9BQI5 828 aa18.87■□□□□ 0.61
CCDC88C-207ENST00000554051 MYH14Q7Z406 1995 aaKnown RBP18.86■□□□□ 0.61
CCDC88C-207ENST00000554051 CYP19A1P11511 503 aaPredicted RBP18.86■□□□□ 0.61
CCDC88C-207ENST00000554051 CALD1Q05682 793 aaKnown RBP18.86■□□□□ 0.61
CCDC88C-207ENST00000554051 ATF5Q9Y2D1 282 aaPredicted RBP18.85■□□□□ 0.61
CCDC88C-207ENST00000554051 SOS1Q07889 1333 aaPredicted RBP18.84■□□□□ 0.61
CCDC88C-207ENST00000554051 SNRPA1P09661 255 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-207ENST00000554051 RFC4P35249 363 aa18.84■□□□□ 0.61
CCDC88C-207ENST00000554051 ARXQ96QS3 562 aa18.84■□□□□ 0.61
CCDC88C-207ENST00000554051 COL15A1P39059 1388 aa18.83■□□□□ 0.61
CCDC88C-207ENST00000554051 A0A087WZG4 1122 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms