RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 C5P01031 1676 aa30.28■■■□□ 2.44
TDP1-206ENST00000553569 PNNQ9H307 717 aaKnown RBP30.28■■■□□ 2.44
TDP1-206ENST00000553569 SLC52A2Q9HAB3 445 aa30.28■■■□□ 2.44
TDP1-206ENST00000553569 DLG5Q8TDM6 1919 aa30.26■■■□□ 2.44
TDP1-206ENST00000553569 TAF1LQ8IZX4 1826 aa30.25■■■□□ 2.43
TDP1-206ENST00000553569 ZNF827Q17R98 1081 aa30.24■■■□□ 2.43
TDP1-206ENST00000553569 CCDC184Q52MB2 194 aa30.24■■■□□ 2.43
TDP1-206ENST00000553569 IL17REQ8NFR9 667 aa30.24■■■□□ 2.43
TDP1-206ENST00000553569 LOC102724428A0A0B4J2F2 783 aa30.23■■■□□ 2.43
TDP1-206ENST00000553569 SIK1P57059 783 aa30.23■■■□□ 2.43
TDP1-206ENST00000553569 SLC15A2Q16348 729 aa30.23■■■□□ 2.43
TDP1-206ENST00000553569 CCDC146Q8IYE0 955 aa30.22■■■□□ 2.43
TDP1-206ENST00000553569 RTF1Q92541 710 aaKnown RBP30.22■■■□□ 2.43
TDP1-206ENST00000553569 SIPA1L3O60292 1781 aaPredicted RBP30.21■■■□□ 2.43
TDP1-206ENST00000553569 TEFQ10587 303 aa30.21■■■□□ 2.43
TDP1-206ENST00000553569 RBM42Q9BTD8 480 aaKnown RBP30.21■■■□□ 2.43
TDP1-206ENST00000553569 ADAMTS8Q9UP79 889 aa30.21■■■□□ 2.43
TDP1-206ENST00000553569 TUBGCP6Q96RT7 1819 aa30.2■■■□□ 2.43
TDP1-206ENST00000553569 NFE2L2Q16236 605 aa30.2■■■□□ 2.43
TDP1-206ENST00000553569 MCM10Q7L590 875 aa30.2■■■□□ 2.43
TDP1-206ENST00000553569 CEMIPQ8WUJ3 1361 aa30.19■■■□□ 2.42
TDP1-206ENST00000553569 AKT1S1Q96B36 256 aa30.19■■■□□ 2.42
TDP1-206ENST00000553569 PTCD1O75127 700 aaKnown RBP30.18■■■□□ 2.42
TDP1-206ENST00000553569 ATP6V1AP38606 617 aa30.18■■■□□ 2.42
TDP1-206ENST00000553569 SLC39A6Q13433 755 aa30.18■■■□□ 2.42
TDP1-206ENST00000553569 DCTN1Q14203 1278 aa30.18■■■□□ 2.42
TDP1-206ENST00000553569 C4BP0C0L5 1744 aa30.18■■■□□ 2.42
TDP1-206ENST00000553569 MRS2Q9HD23 443 aa30.17■■■□□ 2.42
TDP1-206ENST00000553569 CASZ1Q86V15 1759 aa30.17■■■□□ 2.42
TDP1-206ENST00000553569 ITPK1Q13572 414 aa30.16■■■□□ 2.42
TDP1-206ENST00000553569 ZNF831Q5JPB2 1677 aa30.15■■■□□ 2.42
TDP1-206ENST00000553569 QSER1Q2KHR3 1735 aa30.14■■■□□ 2.42
TDP1-206ENST00000553569 HTATSF1O43719 755 aaKnown RBP30.14■■■□□ 2.42
TDP1-206ENST00000553569 LINC00116Q8NCU8 138 aa30.14■■■□□ 2.42
TDP1-206ENST00000553569 RUNDC1Q96C34 613 aa30.14■■■□□ 2.42
TDP1-206ENST00000553569 SLC4A9Q96Q91 983 aa30.14■■■□□ 2.42
TDP1-206ENST00000553569 PDGFDQ9GZP0 370 aaPredicted RBP30.14■■■□□ 2.42
TDP1-206ENST00000553569 TFCP2L1Q9NZI6 479 aa30.14■■■□□ 2.42
TDP1-206ENST00000553569 KCPQ6ZWJ8 1503 aa30.12■■■□□ 2.41
TDP1-206ENST00000553569 RRP7AQ9Y3A4 280 aaKnown RBP30.12■■■□□ 2.41
TDP1-206ENST00000553569 TJP1Q07157 1748 aa30.12■■■□□ 2.41
TDP1-206ENST00000553569 UBR2Q8IWV8 1755 aa30.12■■■□□ 2.41
TDP1-206ENST00000553569 COL5A3P25940 1745 aaPredicted RBP30.11■■■□□ 2.41
TDP1-206ENST00000553569 HMGB2P26583 209 aaKnown RBP30.1■■■□□ 2.41
TDP1-206ENST00000553569 TMPOP42166 694 aaKnown RBP30.1■■■□□ 2.41
TDP1-206ENST00000553569 RIPK4P57078 832 aa30.1■■■□□ 2.41
TDP1-206ENST00000553569 TTC5Q8N0Z6 440 aa30.1■■■□□ 2.41
TDP1-206ENST00000553569 AK7Q96M32 723 aa30.1■■■□□ 2.41
TDP1-206ENST00000553569 THUMPD2Q9BTF0 503 aaKnown RBP30.09■■■□□ 2.41
TDP1-206ENST00000553569 PNPLA7Q6ZV29 1317 aa30.08■■■□□ 2.41
TDP1-206ENST00000553569 BTBD11A6QL63 1104 aa30.08■■■□□ 2.41
TDP1-206ENST00000553569 NEUROD2Q15784 382 aa30.08■■■□□ 2.41
TDP1-206ENST00000553569 CICQ96RK0 1608 aaPredicted RBP30.07■■■□□ 2.4
TDP1-206ENST00000553569 UBR3Q6ZT12 1888 aa30.07■■■□□ 2.4
TDP1-206ENST00000553569 LRP5O75197 1615 aa30.07■■■□□ 2.4
TDP1-206ENST00000553569 ZNF790Q6PG37 636 aa30.06■■■□□ 2.4
TDP1-206ENST00000553569 ZBTB7AO95365 584 aa30.05■■■□□ 2.4
TDP1-206ENST00000553569 PNISRQ8TF01 805 aaKnown RBP30.05■■■□□ 2.4
TDP1-206ENST00000553569 LMOD3Q0VAK6 560 aa30.04■■■□□ 2.4
TDP1-206ENST00000553569 MSH5O43196 834 aa30.03■■■□□ 2.4
TDP1-206ENST00000553569 KCNQ3O43525 872 aa30.03■■■□□ 2.4
TDP1-206ENST00000553569 DNAJC10Q8IXB1 793 aa30.03■■■□□ 2.4
TDP1-206ENST00000553569 GNPATO15228 680 aa30.02■■■□□ 2.4
TDP1-206ENST00000553569 PHF14O94880 888 aa30.02■■■□□ 2.4
TDP1-206ENST00000553569 SMIM5Q71RC9 77 aa30.02■■■□□ 2.4
TDP1-206ENST00000553569 ZNF496Q96IT1 587 aaPredicted RBP30.02■■■□□ 2.4
TDP1-206ENST00000553569 TAF7Q15545 349 aaPredicted RBP30.01■■■□□ 2.39
TDP1-206ENST00000553569 AMIGO3Q86WK7 504 aa30.01■■■□□ 2.39
TDP1-206ENST00000553569 MYH14Q7Z406 1995 aaKnown RBP30.01■■■□□ 2.39
TDP1-206ENST00000553569 CNTNAP4Q9C0A0 1308 aa30■■■□□ 2.39
TDP1-206ENST00000553569 APAF1O14727 1248 aa30■■■□□ 2.39
TDP1-206ENST00000553569 COL23A1Q86Y22 540 aaPredicted RBP30■■■□□ 2.39
TDP1-206ENST00000553569 FMNL2Q96PY5 1086 aa29.99■■■□□ 2.39
TDP1-206ENST00000553569 SPON1Q9HCB6 807 aa29.99■■■□□ 2.39
TDP1-206ENST00000553569 MIS18AQ9NYP9 233 aa29.99■■■□□ 2.39
TDP1-206ENST00000553569 ATF5Q9Y2D1 282 aaPredicted RBP29.99■■■□□ 2.39
TDP1-206ENST00000553569 KDM3BQ7LBC6 1761 aa29.99■■■□□ 2.39
TDP1-206ENST00000553569 HEG1Q9ULI3 1381 aa29.99■■■□□ 2.39
TDP1-206ENST00000553569 CRKLP46109 303 aaKnown RBP29.98■■■□□ 2.39
TDP1-206ENST00000553569 VSIG10Q8N0Z9 540 aa29.97■■■□□ 2.39
TDP1-206ENST00000553569 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.96■■■□□ 2.39
TDP1-206ENST00000553569 RC3H1Q5TC82 1133 aaKnown RBP29.96■■■□□ 2.39
TDP1-206ENST00000553569 FLAD1Q8NFF5 587 aa29.96■■■□□ 2.39
TDP1-206ENST00000553569 MTFR1LQ9H019 292 aa29.96■■■□□ 2.39
TDP1-206ENST00000553569 TRIM35Q9UPQ4 493 aa29.96■■■□□ 2.39
TDP1-206ENST00000553569 SSFA2P28290 1259 aa29.95■■■□□ 2.39
TDP1-206ENST00000553569 RTCBQ9Y3I0 505 aaKnown RBP29.95■■■□□ 2.39
TDP1-206ENST00000553569 SENP3-EIF4A1A0A087X0R7 540 aa29.94■■■□□ 2.38
TDP1-206ENST00000553569 FAM9BQ8IZU0 186 aa29.94■■■□□ 2.38
TDP1-206ENST00000553569 CYP19A1P11511 503 aaPredicted RBP29.93■■■□□ 2.38
TDP1-206ENST00000553569 DIEXFQ68CQ4 756 aaKnown RBP29.93■■■□□ 2.38
TDP1-206ENST00000553569 SLC16A10Q8TF71 515 aa29.92■■■□□ 2.38
TDP1-206ENST00000553569 CCDC87Q9NVE4 849 aa29.92■■■□□ 2.38
TDP1-206ENST00000553569 RPS6KA4O75676 772 aa29.9■■■□□ 2.38
TDP1-206ENST00000553569 INTS5Q6P9B9 1019 aaKnown RBP29.9■■■□□ 2.38
TDP1-206ENST00000553569 TSPYL4Q9UJ04 414 aa29.9■■■□□ 2.38
TDP1-206ENST00000553569 C4AP0C0L4 1744 aa29.9■■■□□ 2.38
TDP1-206ENST00000553569 MSL1Q68DK7 614 aa29.89■■■□□ 2.38
TDP1-206ENST00000553569 STARD3NLO95772 234 aa29.88■■■□□ 2.37
TDP1-206ENST00000553569 PTGER2P43116 358 aa29.88■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms