RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 NEFMP07197 916 aa20.45■□□□□ 0.86
SHMT2-204ENST00000553324 PNNQ9H307 717 aaKnown RBP20.45■□□□□ 0.86
SHMT2-204ENST00000553324 LGR6Q9HBX8 967 aa20.45■□□□□ 0.86
SHMT2-204ENST00000553324 TOGARAM1Q9Y4F4 1720 aa20.44■□□□□ 0.86
SHMT2-204ENST00000553324 AK7Q96M32 723 aa20.44■□□□□ 0.86
SHMT2-204ENST00000553324 ATF5Q9Y2D1 282 aaPredicted RBP20.44■□□□□ 0.86
SHMT2-204ENST00000553324 PAPPAQ13219 1627 aa20.44■□□□□ 0.86
SHMT2-204ENST00000553324 PNPLA7Q6ZV29 1317 aa20.44■□□□□ 0.86
SHMT2-204ENST00000553324 RBM42Q9BTD8 480 aaKnown RBP20.43■□□□□ 0.86
SHMT2-204ENST00000553324 ITGB4P16144 1822 aa20.43■□□□□ 0.86
SHMT2-204ENST00000553324 PHACTR3Q96KR7 559 aa20.42■□□□□ 0.86
SHMT2-204ENST00000553324 MYBBP1AQ9BQG0 1328 aaKnown RBP20.41■□□□□ 0.86
SHMT2-204ENST00000553324 MSH5O43196 834 aa20.4■□□□□ 0.86
SHMT2-204ENST00000553324 PTGER2P43116 358 aa20.4■□□□□ 0.86
SHMT2-204ENST00000553324 MAP3K5Q99683 1374 aa20.4■□□□□ 0.86
SHMT2-204ENST00000553324 ZNF316A6NFI3 1004 aaPredicted RBP20.39■□□□□ 0.85
SHMT2-204ENST00000553324 PTCD1O75127 700 aaKnown RBP20.39■□□□□ 0.85
SHMT2-204ENST00000553324 TEFQ10587 303 aa20.39■□□□□ 0.85
SHMT2-204ENST00000553324 ITPK1Q13572 414 aa20.39■□□□□ 0.85
SHMT2-204ENST00000553324 RC3H1Q5TC82 1133 aaKnown RBP20.39■□□□□ 0.85
SHMT2-204ENST00000553324 COL23A1Q86Y22 540 aaPredicted RBP20.39■□□□□ 0.85
SHMT2-204ENST00000553324 LINC00116Q8NCU8 138 aa20.39■□□□□ 0.85
SHMT2-204ENST00000553324 RTF1Q92541 710 aaKnown RBP20.39■□□□□ 0.85
SHMT2-204ENST00000553324 HTATSF1O43719 755 aaKnown RBP20.38■□□□□ 0.85
SHMT2-204ENST00000553324 SSFA2P28290 1259 aa20.38■□□□□ 0.85
SHMT2-204ENST00000553324 POLD1P28340 1107 aa20.38■□□□□ 0.85
SHMT2-204ENST00000553324 IL17REQ8NFR9 667 aa20.38■□□□□ 0.85
SHMT2-204ENST00000553324 CASZ1Q86V15 1759 aa20.38■□□□□ 0.85
SHMT2-204ENST00000553324 SLC4A9Q96Q91 983 aa20.36■□□□□ 0.85
SHMT2-204ENST00000553324 SGIP1Q9BQI5 828 aa20.36■□□□□ 0.85
SHMT2-204ENST00000553324 PRKRIP1Q9H875 184 aaPredicted RBP20.36■□□□□ 0.85
SHMT2-204ENST00000553324 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.35■□□□□ 0.85
SHMT2-204ENST00000553324 GNPATO15228 680 aa20.35■□□□□ 0.85
SHMT2-204ENST00000553324 ARXQ96QS3 562 aa20.35■□□□□ 0.85
SHMT2-204ENST00000553324 RTCBQ9Y3I0 505 aaKnown RBP20.35■□□□□ 0.85
SHMT2-204ENST00000553324 TTC5Q8N0Z6 440 aa20.34■□□□□ 0.85
SHMT2-204ENST00000553324 CNTNAP4Q9C0A0 1308 aa20.33■□□□□ 0.85
SHMT2-204ENST00000553324 SLC39A6Q13433 755 aa20.33■□□□□ 0.85
SHMT2-204ENST00000553324 TRAPPC3LQ5T215 181 aa20.33■□□□□ 0.85
SHMT2-204ENST00000553324 VSIG10Q8N0Z9 540 aa20.33■□□□□ 0.85
SHMT2-204ENST00000553324 PLEKHF1Q96S99 279 aa20.33■□□□□ 0.85
SHMT2-204ENST00000553324 MRC1P22897 1456 aa20.32■□□□□ 0.84
SHMT2-204ENST00000553324 PHF14O94880 888 aa20.32■□□□□ 0.84
SHMT2-204ENST00000553324 ADRA2BP18089 450 aa20.32■□□□□ 0.84
SHMT2-204ENST00000553324 CEMIPQ8WUJ3 1361 aa20.32■□□□□ 0.84
SHMT2-204ENST00000553324 C5P01031 1676 aa20.32■□□□□ 0.84
SHMT2-204ENST00000553324 SCN11AQ9UI33 1791 aa20.31■□□□□ 0.84
SHMT2-204ENST00000553324 MAPK8IP3Q9UPT6 1336 aa20.31■□□□□ 0.84
SHMT2-204ENST00000553324 C4BP0C0L5 1744 aa20.31■□□□□ 0.84
SHMT2-204ENST00000553324 QSER1Q2KHR3 1735 aa20.31■□□□□ 0.84
SHMT2-204ENST00000553324 DCAF8L1A6NGE4 600 aa20.31■□□□□ 0.84
SHMT2-204ENST00000553324 RPS6KA4O75676 772 aa20.31■□□□□ 0.84
SHMT2-204ENST00000553324 ZNF790Q6PG37 636 aa20.31■□□□□ 0.84
SHMT2-204ENST00000553324 BTBD11A6QL63 1104 aa20.3■□□□□ 0.84
SHMT2-204ENST00000553324 TEX13AQ9BXU3 409 aaPredicted RBP20.3■□□□□ 0.84
SHMT2-204ENST00000553324 WDR43Q15061 677 aaKnown RBP eCLIP20.29■□□□□ 0.84
SHMT2-204ENST00000553324 ZNF831Q5JPB2 1677 aa20.29■□□□□ 0.84
SHMT2-204ENST00000553324 CRKLP46109 303 aaKnown RBP20.28■□□□□ 0.84
SHMT2-204ENST00000553324 NFE2L2Q16236 605 aa20.28■□□□□ 0.84
SHMT2-204ENST00000553324 MCM10Q7L590 875 aa20.28■□□□□ 0.84
SHMT2-204ENST00000553324 AMIGO3Q86WK7 504 aa20.28■□□□□ 0.84
SHMT2-204ENST00000553324 SYT17Q9BSW7 474 aa20.28■□□□□ 0.84
SHMT2-204ENST00000553324 FHDC1Q9C0D6 1143 aaPredicted RBP20.28■□□□□ 0.84
SHMT2-204ENST00000553324 ADAMTS7Q9UKP4 1686 aa20.28■□□□□ 0.84
SHMT2-204ENST00000553324 TAF1LQ8IZX4 1826 aa20.27■□□□□ 0.84
SHMT2-204ENST00000553324 STARD3NLO95772 234 aa20.27■□□□□ 0.84
SHMT2-204ENST00000553324 RFC4P35249 363 aa20.27■□□□□ 0.84
SHMT2-204ENST00000553324 DNAJC10Q8IXB1 793 aa20.27■□□□□ 0.84
SHMT2-204ENST00000553324 TAF7Q15545 349 aaPredicted RBP20.26■□□□□ 0.83
SHMT2-204ENST00000553324 ARHGEF1Q92888 912 aaKnown RBP20.26■□□□□ 0.83
SHMT2-204ENST00000553324 FMNL2Q96PY5 1086 aa20.26■□□□□ 0.83
SHMT2-204ENST00000553324 CYP19A1P11511 503 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-204ENST00000553324 MSL1Q68DK7 614 aa20.25■□□□□ 0.83
SHMT2-204ENST00000553324 NLGN1Q8N2Q7 840 aa20.25■□□□□ 0.83
SHMT2-204ENST00000553324 CCDC87Q9NVE4 849 aa20.25■□□□□ 0.83
SHMT2-204ENST00000553324 DCTN1Q14203 1278 aa20.24■□□□□ 0.83
SHMT2-204ENST00000553324 INTS5Q6P9B9 1019 aaKnown RBP20.24■□□□□ 0.83
SHMT2-204ENST00000553324 SMIM5Q71RC9 77 aa20.24■□□□□ 0.83
SHMT2-204ENST00000553324 PNISRQ8TF01 805 aaKnown RBP20.24■□□□□ 0.83
SHMT2-204ENST00000553324 ZNF496Q96IT1 587 aaPredicted RBP20.24■□□□□ 0.83
SHMT2-204ENST00000553324 HEG1Q9ULI3 1381 aa20.22■□□□□ 0.83
SHMT2-204ENST00000553324 LMOD3Q0VAK6 560 aa20.22■□□□□ 0.83
SHMT2-204ENST00000553324 ANP32CO43423 234 aa20.21■□□□□ 0.83
SHMT2-204ENST00000553324 RIPK4P57078 832 aa20.21■□□□□ 0.83
SHMT2-204ENST00000553324 RUNDC1Q96C34 613 aa20.21■□□□□ 0.83
SHMT2-204ENST00000553324 ADAMTS8Q9UP79 889 aa20.21■□□□□ 0.83
SHMT2-204ENST00000553324 TUBGCP6Q96RT7 1819 aa20.2■□□□□ 0.82
SHMT2-204ENST00000553324 KLHL34Q8N239 644 aa20.2■□□□□ 0.82
SHMT2-204ENST00000553324 KCPQ6ZWJ8 1503 aa20.2■□□□□ 0.82
SHMT2-204ENST00000553324 ZPR1O75312 459 aa20.19■□□□□ 0.82
SHMT2-204ENST00000553324 SNRPA1P09661 255 aaKnown RBP20.19■□□□□ 0.82
SHMT2-204ENST00000553324 TMPOP42166 694 aaKnown RBP20.19■□□□□ 0.82
SHMT2-204ENST00000553324 CD2APQ9Y5K6 639 aa20.19■□□□□ 0.82
SHMT2-204ENST00000553324 UBR3Q6ZT12 1888 aa20.19■□□□□ 0.82
SHMT2-204ENST00000553324 GYS1P13807 737 aa20.18■□□□□ 0.82
SHMT2-204ENST00000553324 NPM2Q86SE8 214 aaKnown RBP20.18■□□□□ 0.82
SHMT2-204ENST00000553324 SOS1Q07889 1333 aaPredicted RBP20.18■□□□□ 0.82
SHMT2-204ENST00000553324 A0A087WZG4 1122 aa20.17■□□□□ 0.82
SHMT2-204ENST00000553324 KCNQ3O43525 872 aa20.17■□□□□ 0.82
SHMT2-204ENST00000553324 ZBTB1Q9Y2K1 713 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms