RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ATG3Q9NT62 314 aa18.73■□□□□ 0.59
PTCH1-226ENST00000553011 CCNL1Q9UK58 526 aaPredicted RBP18.73■□□□□ 0.59
PTCH1-226ENST00000553011 MAPK8IP3Q9UPT6 1336 aa18.73■□□□□ 0.59
PTCH1-226ENST00000553011 C5P01031 1676 aa18.73■□□□□ 0.59
PTCH1-226ENST00000553011 R3HDM1Q15032 1099 aaKnown RBP18.72■□□□□ 0.59
PTCH1-226ENST00000553011 SLC27A3Q5K4L6 730 aa18.72■□□□□ 0.59
PTCH1-226ENST00000553011 NBPF14Q5TI25 921 aa18.72■□□□□ 0.59
PTCH1-226ENST00000553011 CCDC146Q8IYE0 955 aa18.72■□□□□ 0.59
PTCH1-226ENST00000553011 PNNQ9H307 717 aaKnown RBP18.72■□□□□ 0.59
PTCH1-226ENST00000553011 TUBGCP6Q96RT7 1819 aa18.71■□□□□ 0.59
PTCH1-226ENST00000553011 NFE2L2Q16236 605 aa18.7■□□□□ 0.58
PTCH1-226ENST00000553011 MRS2Q9HD23 443 aa18.7■□□□□ 0.58
PTCH1-226ENST00000553011 CEMIPQ8WUJ3 1361 aa18.69■□□□□ 0.58
PTCH1-226ENST00000553011 DCTN1Q14203 1278 aa18.69■□□□□ 0.58
PTCH1-226ENST00000553011 MCM10Q7L590 875 aa18.69■□□□□ 0.58
PTCH1-226ENST00000553011 LOC102724428A0A0B4J2F2 783 aa18.68■□□□□ 0.58
PTCH1-226ENST00000553011 SIK1P57059 783 aa18.68■□□□□ 0.58
PTCH1-226ENST00000553011 ZNF827Q17R98 1081 aa18.68■□□□□ 0.58
PTCH1-226ENST00000553011 RTF1Q92541 710 aaKnown RBP18.68■□□□□ 0.58
PTCH1-226ENST00000553011 STK32BQ9NY57 414 aa18.68■□□□□ 0.58
PTCH1-226ENST00000553011 ZNF831Q5JPB2 1677 aa18.67■□□□□ 0.58
PTCH1-226ENST00000553011 TEFQ10587 303 aa18.67■□□□□ 0.58
PTCH1-226ENST00000553011 SLC39A6Q13433 755 aa18.67■□□□□ 0.58
PTCH1-226ENST00000553011 RUNDC1Q96C34 613 aa18.67■□□□□ 0.58
PTCH1-226ENST00000553011 RBM42Q9BTD8 480 aaKnown RBP18.67■□□□□ 0.58
PTCH1-226ENST00000553011 UBR2Q8IWV8 1755 aa18.67■□□□□ 0.58
PTCH1-226ENST00000553011 HTATSF1O43719 755 aaKnown RBP18.66■□□□□ 0.58
PTCH1-226ENST00000553011 SLC15A2Q16348 729 aa18.66■□□□□ 0.58
PTCH1-226ENST00000553011 PNISRQ8TF01 805 aaKnown RBP18.66■□□□□ 0.58
PTCH1-226ENST00000553011 SLC4A9Q96Q91 983 aa18.66■□□□□ 0.58
PTCH1-226ENST00000553011 C4BP0C0L5 1744 aa18.66■□□□□ 0.58
PTCH1-226ENST00000553011 QSER1Q2KHR3 1735 aa18.66■□□□□ 0.58
PTCH1-226ENST00000553011 PTCD1O75127 700 aaKnown RBP18.65■□□□□ 0.58
PTCH1-226ENST00000553011 TMPOP42166 694 aaKnown RBP18.65■□□□□ 0.58
PTCH1-226ENST00000553011 ITPK1Q13572 414 aa18.65■□□□□ 0.58
PTCH1-226ENST00000553011 AKT1S1Q96B36 256 aa18.65■□□□□ 0.58
PTCH1-226ENST00000553011 RRP7AQ9Y3A4 280 aaKnown RBP18.65■□□□□ 0.58
PTCH1-226ENST00000553011 COL5A3P25940 1745 aaPredicted RBP18.65■□□□□ 0.58
PTCH1-226ENST00000553011 TJP1Q07157 1748 aa18.65■□□□□ 0.58
PTCH1-226ENST00000553011 CASZ1Q86V15 1759 aa18.65■□□□□ 0.58
PTCH1-226ENST00000553011 KCPQ6ZWJ8 1503 aa18.64■□□□□ 0.58
PTCH1-226ENST00000553011 ATP6V1AP38606 617 aa18.64■□□□□ 0.57
PTCH1-226ENST00000553011 RIPK4P57078 832 aa18.64■□□□□ 0.57
PTCH1-226ENST00000553011 THUMPD2Q9BTF0 503 aaKnown RBP18.64■□□□□ 0.57
PTCH1-226ENST00000553011 MYH14Q7Z406 1995 aaKnown RBP18.64■□□□□ 0.57
PTCH1-226ENST00000553011 NEUROD2Q15784 382 aa18.63■□□□□ 0.57
PTCH1-226ENST00000553011 LINC00116Q8NCU8 138 aa18.63■□□□□ 0.57
PTCH1-226ENST00000553011 UBR3Q6ZT12 1888 aa18.63■□□□□ 0.57
PTCH1-226ENST00000553011 PDGFDQ9GZP0 370 aaPredicted RBP18.62■□□□□ 0.57
PTCH1-226ENST00000553011 CICQ96RK0 1608 aaPredicted RBP18.62■□□□□ 0.57
PTCH1-226ENST00000553011 BTBD11A6QL63 1104 aa18.6■□□□□ 0.57
PTCH1-226ENST00000553011 KCNQ3O43525 872 aa18.6■□□□□ 0.57
PTCH1-226ENST00000553011 DIEXFQ68CQ4 756 aaKnown RBP18.6■□□□□ 0.57
PTCH1-226ENST00000553011 TTC5Q8N0Z6 440 aa18.6■□□□□ 0.57
PTCH1-226ENST00000553011 KDM3BQ7LBC6 1761 aa18.6■□□□□ 0.57
PTCH1-226ENST00000553011 APAF1O14727 1248 aa18.59■□□□□ 0.57
PTCH1-226ENST00000553011 ZNF790Q6PG37 636 aa18.59■□□□□ 0.57
PTCH1-226ENST00000553011 TFCP2L1Q9NZI6 479 aa18.59■□□□□ 0.57
PTCH1-226ENST00000553011 ZNF496Q96IT1 587 aaPredicted RBP18.58■□□□□ 0.56
PTCH1-226ENST00000553011 TRIM35Q9UPQ4 493 aa18.58■□□□□ 0.56
PTCH1-226ENST00000553011 PNPLA7Q6ZV29 1317 aa18.57■□□□□ 0.56
PTCH1-226ENST00000553011 SENP3-EIF4A1A0A087X0R7 540 aa18.57■□□□□ 0.56
PTCH1-226ENST00000553011 LMOD3Q0VAK6 560 aa18.57■□□□□ 0.56
PTCH1-226ENST00000553011 TAF7Q15545 349 aaPredicted RBP18.57■□□□□ 0.56
PTCH1-226ENST00000553011 AMIGO3Q86WK7 504 aa18.57■□□□□ 0.56
PTCH1-226ENST00000553011 DNAJC10Q8IXB1 793 aa18.57■□□□□ 0.56
PTCH1-226ENST00000553011 AK7Q96M32 723 aa18.57■□□□□ 0.56
PTCH1-226ENST00000553011 MIS18AQ9NYP9 233 aa18.57■□□□□ 0.56
PTCH1-226ENST00000553011 HMGB2P26583 209 aaKnown RBP18.56■□□□□ 0.56
PTCH1-226ENST00000553011 SMIM5Q71RC9 77 aa18.56■□□□□ 0.56
PTCH1-226ENST00000553011 FAM9BQ8IZU0 186 aa18.56■□□□□ 0.56
PTCH1-226ENST00000553011 HEG1Q9ULI3 1381 aa18.55■□□□□ 0.56
PTCH1-226ENST00000553011 GNPATO15228 680 aa18.54■□□□□ 0.56
PTCH1-226ENST00000553011 FMNL2Q96PY5 1086 aa18.54■□□□□ 0.56
PTCH1-226ENST00000553011 CNTNAP4Q9C0A0 1308 aa18.53■□□□□ 0.56
PTCH1-226ENST00000553011 LRP5O75197 1615 aa18.53■□□□□ 0.56
PTCH1-226ENST00000553011 PHF14O94880 888 aa18.53■□□□□ 0.56
PTCH1-226ENST00000553011 ZBTB7AO95365 584 aa18.53■□□□□ 0.56
PTCH1-226ENST00000553011 CRKLP46109 303 aaKnown RBP18.53■□□□□ 0.56
PTCH1-226ENST00000553011 COL23A1Q86Y22 540 aaPredicted RBP18.53■□□□□ 0.56
PTCH1-226ENST00000553011 VSIG10Q8N0Z9 540 aa18.53■□□□□ 0.56
PTCH1-226ENST00000553011 RC3H1Q5TC82 1133 aaKnown RBP18.52■□□□□ 0.56
PTCH1-226ENST00000553011 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.51■□□□□ 0.55
PTCH1-226ENST00000553011 CCER2I3L3R5 266 aa18.51■□□□□ 0.55
PTCH1-226ENST00000553011 MSH5O43196 834 aa18.51■□□□□ 0.55
PTCH1-226ENST00000553011 CYP19A1P11511 503 aaPredicted RBP18.51■□□□□ 0.55
PTCH1-226ENST00000553011 C4AP0C0L4 1744 aa18.51■□□□□ 0.55
PTCH1-226ENST00000553011 INTS5Q6P9B9 1019 aaKnown RBP18.5■□□□□ 0.55
PTCH1-226ENST00000553011 MIER1Q8N108 512 aa18.5■□□□□ 0.55
PTCH1-226ENST00000553011 ATF5Q9Y2D1 282 aaPredicted RBP18.5■□□□□ 0.55
PTCH1-226ENST00000553011 LAMB4A4D0S4 1761 aa18.5■□□□□ 0.55
PTCH1-226ENST00000553011 COL24A1Q17RW2 1714 aa18.49■□□□□ 0.55
PTCH1-226ENST00000553011 PRAMEF22A3QJZ6 481 aa18.49■□□□□ 0.55
PTCH1-226ENST00000553011 SSFA2P28290 1259 aa18.49■□□□□ 0.55
PTCH1-226ENST00000553011 FLAD1Q8NFF5 587 aa18.49■□□□□ 0.55
PTCH1-226ENST00000553011 CCDC87Q9NVE4 849 aa18.49■□□□□ 0.55
PTCH1-226ENST00000553011 TSPYL4Q9UJ04 414 aa18.49■□□□□ 0.55
PTCH1-226ENST00000553011 RTCBQ9Y3I0 505 aaKnown RBP18.49■□□□□ 0.55
PTCH1-226ENST00000553011 SRCAPQ6ZRS2 3230 aa18.49■□□□□ 0.55
PTCH1-226ENST00000553011 RPS6KA4O75676 772 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms