RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PSDA5PKW4 1024 aaPredicted RBP9.85□□□□□ -0.83
LIMA1-216ENST00000552909 NKX1-1Q15270 411 aaPredicted RBP9.85□□□□□ -0.83
LIMA1-216ENST00000552909 KCNQ4P56696 695 aa9.84□□□□□ -0.83
LIMA1-216ENST00000552909 TXNRD1Q16881 649 aa9.84□□□□□ -0.83
LIMA1-216ENST00000552909 MPRIPQ6WCQ1 1025 aa9.84□□□□□ -0.83
LIMA1-216ENST00000552909 IFNL2Q8IZJ0 200 aa9.84□□□□□ -0.83
LIMA1-216ENST00000552909 PNISRQ8TF01 805 aaKnown RBP9.84□□□□□ -0.83
LIMA1-216ENST00000552909 TOGARAM1Q9Y4F4 1720 aa9.84□□□□□ -0.83
LIMA1-216ENST00000552909 PLEKHO1Q53GL0 409 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-216ENST00000552909 ZNF530Q6P9A1 599 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-216ENST00000552909 DAXXQ9UER7 740 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-216ENST00000552909 R3HDM1Q15032 1099 aaKnown RBP9.83□□□□□ -0.84
LIMA1-216ENST00000552909 CFAP53Q96M91 514 aa9.83□□□□□ -0.84
LIMA1-216ENST00000552909 LRRC4BQ9NT99 713 aa9.83□□□□□ -0.84
LIMA1-216ENST00000552909 RREB1Q92766 1687 aa9.83□□□□□ -0.84
LIMA1-216ENST00000552909 ITGB4P16144 1822 aa9.82□□□□□ -0.84
LIMA1-216ENST00000552909 RRP1P56182 461 aaKnown RBP9.82□□□□□ -0.84
LIMA1-216ENST00000552909 AMOTQ4VCS5 1084 aa9.82□□□□□ -0.84
LIMA1-216ENST00000552909 PIGBQ92521 554 aa9.82□□□□□ -0.84
LIMA1-216ENST00000552909 NUP188Q5SRE5 1749 aa9.82□□□□□ -0.84
LIMA1-216ENST00000552909 MTHFSDQ2M296 383 aaKnown RBP9.82□□□□□ -0.84
LIMA1-216ENST00000552909 EXOC6Q8TAG9 804 aa9.82□□□□□ -0.84
LIMA1-216ENST00000552909 GOLGB1Q14789 3259 aaKnown RBP9.82□□□□□ -0.84
LIMA1-216ENST00000552909 UTRNP46939 3433 aa9.82□□□□□ -0.84
LIMA1-216ENST00000552909 U2AF1L5P0DN76 240 aaPredicted RBP9.81□□□□□ -0.84
LIMA1-216ENST00000552909 U2AF1Q01081 240 aaKnown RBP eCLIP9.81□□□□□ -0.84
LIMA1-216ENST00000552909 PHACTR3Q96KR7 559 aa9.81□□□□□ -0.84
LIMA1-216ENST00000552909 RGPD3A6NKT7 1758 aaPredicted RBP9.81□□□□□ -0.84
LIMA1-216ENST00000552909 RGPD4Q7Z3J3 1758 aa9.81□□□□□ -0.84
LIMA1-216ENST00000552909 KDM6AO15550 1401 aaPredicted RBP9.81□□□□□ -0.84
LIMA1-216ENST00000552909 PRKAR2BP31323 418 aa9.8□□□□□ -0.84
LIMA1-216ENST00000552909 C1orf141Q5JVX7 400 aa9.8□□□□□ -0.84
LIMA1-216ENST00000552909 DCAF5Q96JK2 942 aa9.8□□□□□ -0.84
LIMA1-216ENST00000552909 PDGFDQ9GZP0 370 aaPredicted RBP9.8□□□□□ -0.84
LIMA1-216ENST00000552909 LGR6Q9HBX8 967 aa9.8□□□□□ -0.84
LIMA1-216ENST00000552909 ASAP1Q9ULH1 1129 aa9.8□□□□□ -0.84
LIMA1-216ENST00000552909 PLEKHG2Q9H7P9 1386 aa9.8□□□□□ -0.84
LIMA1-216ENST00000552909 VSIG10Q8N0Z9 540 aa9.8□□□□□ -0.84
LIMA1-216ENST00000552909 ZMYND15Q9H091 742 aa9.8□□□□□ -0.84
LIMA1-216ENST00000552909 AKAP4Q5JQC9 854 aa9.79□□□□□ -0.84
LIMA1-216ENST00000552909 TMOD3Q9NYL9 352 aa9.79□□□□□ -0.84
LIMA1-216ENST00000552909 SENP3-EIF4A1A0A087X0R7 540 aa9.78□□□□□ -0.84
LIMA1-216ENST00000552909 NBPF14Q5TI25 921 aa9.78□□□□□ -0.84
LIMA1-216ENST00000552909 NFATC2IPQ8NCF5 419 aa9.78□□□□□ -0.84
LIMA1-216ENST00000552909 LY75O60449 1722 aa9.78□□□□□ -0.84
LIMA1-216ENST00000552909 PALLDQ8WX93 1383 aa9.78□□□□□ -0.84
LIMA1-216ENST00000552909 ERVV-2B6SEH9 535 aa9.78□□□□□ -0.84
LIMA1-216ENST00000552909 HSP90AB1P08238 724 aaKnown RBP9.78□□□□□ -0.84
LIMA1-216ENST00000552909 ATG3Q9NT62 314 aa9.78□□□□□ -0.84
LIMA1-216ENST00000552909 FCHSD2O94868 740 aa9.77□□□□□ -0.85
LIMA1-216ENST00000552909 SLC4A3P48751 1232 aa9.77□□□□□ -0.85
LIMA1-216ENST00000552909 CABP4P57796 275 aa9.77□□□□□ -0.85
LIMA1-216ENST00000552909 ZNF827Q17R98 1081 aa9.77□□□□□ -0.85
LIMA1-216ENST00000552909 CCNL1Q9UK58 526 aaPredicted RBP9.77□□□□□ -0.85
LIMA1-216ENST00000552909 RNMTO43148 476 aaKnown RBP9.77□□□□□ -0.85
LIMA1-216ENST00000552909 WDR43Q15061 677 aaKnown RBP eCLIP9.77□□□□□ -0.85
LIMA1-216ENST00000552909 SLC15A2Q16348 729 aa9.77□□□□□ -0.85
LIMA1-216ENST00000552909 SLC27A3Q5K4L6 730 aa9.77□□□□□ -0.85
LIMA1-216ENST00000552909 RCAN3Q9UKA8 241 aa9.77□□□□□ -0.85
LIMA1-216ENST00000552909 ADAMTS8Q9UP79 889 aa9.77□□□□□ -0.85
LIMA1-216ENST00000552909 SCN11AQ9UI33 1791 aa9.76□□□□□ -0.85
LIMA1-216ENST00000552909 FRAT2O75474 233 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-216ENST00000552909 IL17REQ8NFR9 667 aa9.76□□□□□ -0.85
LIMA1-216ENST00000552909 VIRMAQ69YN4 1812 aaKnown RBP9.76□□□□□ -0.85
LIMA1-216ENST00000552909 PAPPAQ13219 1627 aa9.76□□□□□ -0.85
LIMA1-216ENST00000552909 SLC4A9Q96Q91 983 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 PLEKHF1Q96S99 279 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 LOC102724428A0A0B4J2F2 783 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 GNAT3A8MTJ3 354 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 SIK1P57059 783 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 GAS2L2Q8NHY3 880 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 SMARCC1Q92922 1105 aaPredicted RBP9.75□□□□□ -0.85
LIMA1-216ENST00000552909 AKT1S1Q96B36 256 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 SLC52A2Q9HAB3 445 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 STK32BQ9NY57 414 aa9.75□□□□□ -0.85
LIMA1-216ENST00000552909 PTCD1O75127 700 aaKnown RBP9.74□□□□□ -0.85
LIMA1-216ENST00000552909 SLC39A6Q13433 755 aa9.74□□□□□ -0.85
LIMA1-216ENST00000552909 DCTN1Q14203 1278 aa9.74□□□□□ -0.85
LIMA1-216ENST00000552909 SMIM5Q71RC9 77 aa9.74□□□□□ -0.85
LIMA1-216ENST00000552909 RRAGDQ9NQL2 400 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-216ENST00000552909 RRP9O43818 475 aaKnown RBP9.74□□□□□ -0.85
LIMA1-216ENST00000552909 ITPK1Q13572 414 aa9.74□□□□□ -0.85
LIMA1-216ENST00000552909 HSP90AA2PQ14568 343 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-216ENST00000552909 AMIGO3Q86WK7 504 aa9.74□□□□□ -0.85
LIMA1-216ENST00000552909 RBM42Q9BTD8 480 aaKnown RBP9.74□□□□□ -0.85
LIMA1-216ENST00000552909 MAP3K5Q99683 1374 aa9.74□□□□□ -0.85
LIMA1-216ENST00000552909 ATP6V1AP38606 617 aa9.73□□□□□ -0.85
LIMA1-216ENST00000552909 MCM10Q7L590 875 aa9.73□□□□□ -0.85
LIMA1-216ENST00000552909 TAF1LQ8IZX4 1826 aa9.73□□□□□ -0.85
LIMA1-216ENST00000552909 ADAMTS7Q9UKP4 1686 aa9.73□□□□□ -0.85
LIMA1-216ENST00000552909 ZBTB7AO95365 584 aa9.73□□□□□ -0.85
LIMA1-216ENST00000552909 L1TD1Q5T7N2 865 aaKnown RBP9.73□□□□□ -0.85
LIMA1-216ENST00000552909 LINC00116Q8NCU8 138 aa9.73□□□□□ -0.85
LIMA1-216ENST00000552909 TFCP2L1Q9NZI6 479 aa9.73□□□□□ -0.85
LIMA1-216ENST00000552909 HSP90AA1P07900 732 aaKnown RBP9.72□□□□□ -0.85
LIMA1-216ENST00000552909 CCDC146Q8IYE0 955 aa9.72□□□□□ -0.85
LIMA1-216ENST00000552909 NAP1L5Q96NT1 182 aaPredicted RBP9.72□□□□□ -0.85
LIMA1-216ENST00000552909 C5P01031 1676 aa9.72□□□□□ -0.85
LIMA1-216ENST00000552909 TUBGCP6Q96RT7 1819 aa9.71□□□□□ -0.85
LIMA1-216ENST00000552909 CEMIPQ8WUJ3 1361 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 615.2 ms