RNA–Protein interactions for RNA: ENST00000551355.5

NEK3-203, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-203ENST00000551355 RBM6P78332 1123 aaKnown RBP13.42□□□□□ -0.26
NEK3-203ENST00000551355 EXOSC9Q06265 439 aaKnown RBP13.42□□□□□ -0.26
NEK3-203ENST00000551355 MRC1P22897 1456 aa13.42□□□□□ -0.26
NEK3-203ENST00000551355 A0A0G2JS52 829 aa13.41□□□□□ -0.26
NEK3-203ENST00000551355 HOXB7P09629 217 aa13.41□□□□□ -0.26
NEK3-203ENST00000551355 MYT1Q01538 1121 aa13.41□□□□□ -0.26
NEK3-203ENST00000551355 NFATC2IPQ8NCF5 419 aa13.41□□□□□ -0.26
NEK3-203ENST00000551355 TWISTNBQ3B726 338 aaPredicted RBP13.4□□□□□ -0.26
NEK3-203ENST00000551355 ALDH1L2Q3SY69 923 aa13.4□□□□□ -0.26
NEK3-203ENST00000551355 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.4□□□□□ -0.26
NEK3-203ENST00000551355 TMOD3Q9NYL9 352 aa13.4□□□□□ -0.26
NEK3-203ENST00000551355 ZNF790Q6PG37 636 aa13.39□□□□□ -0.27
NEK3-203ENST00000551355 SEPT12Q8IYM1 358 aa13.39□□□□□ -0.27
NEK3-203ENST00000551355 TTC5Q8N0Z6 440 aa13.39□□□□□ -0.27
NEK3-203ENST00000551355 MARCH10Q8NA82 808 aaPredicted RBP13.39□□□□□ -0.27
NEK3-203ENST00000551355 MIS18AQ9NYP9 233 aa13.39□□□□□ -0.27
NEK3-203ENST00000551355 WNK3Q9BYP7 1800 aa13.39□□□□□ -0.27
NEK3-203ENST00000551355 BCL9O00512 1426 aa13.39□□□□□ -0.27
NEK3-203ENST00000551355 GLI3P10071 1580 aa13.38□□□□□ -0.27
NEK3-203ENST00000551355 VAMP4O75379 141 aa13.38□□□□□ -0.27
NEK3-203ENST00000551355 RARSP54136 660 aaKnown RBP13.38□□□□□ -0.27
NEK3-203ENST00000551355 EIF4A1P60842 406 aaKnown RBP13.38□□□□□ -0.27
NEK3-203ENST00000551355 THSD7AQ9UPZ6 1657 aa13.37□□□□□ -0.27
NEK3-203ENST00000551355 RXRBP28702 533 aa13.37□□□□□ -0.27
NEK3-203ENST00000551355 BRPF1P55201 1214 aaPredicted RBP13.37□□□□□ -0.27
NEK3-203ENST00000551355 C8orf58Q8NAV2 365 aa13.37□□□□□ -0.27
NEK3-203ENST00000551355 SUPT16HQ9Y5B9 1047 aaKnown RBP13.37□□□□□ -0.27
NEK3-203ENST00000551355 RNF123Q5XPI4 1314 aa13.37□□□□□ -0.27
NEK3-203ENST00000551355 NEFLP07196 543 aa13.36□□□□□ -0.27
NEK3-203ENST00000551355 FMNL2Q96PY5 1086 aa13.36□□□□□ -0.27
NEK3-203ENST00000551355 SHANK3Q9BYB0 1731 aa13.36□□□□□ -0.27
NEK3-203ENST00000551355 SCN11AQ9UI33 1791 aa13.35□□□□□ -0.27
NEK3-203ENST00000551355 CCDC30Q5VVM6 783 aa13.35□□□□□ -0.27
NEK3-203ENST00000551355 TSPYL6Q8N831 410 aa13.35□□□□□ -0.27
NEK3-203ENST00000551355 HEG1Q9ULI3 1381 aa13.34□□□□□ -0.27
NEK3-203ENST00000551355 IPO8O15397 1037 aaKnown RBP13.34□□□□□ -0.27
NEK3-203ENST00000551355 SNRPA1P09661 255 aaKnown RBP13.34□□□□□ -0.27
NEK3-203ENST00000551355 MS4A1P11836 297 aa13.34□□□□□ -0.27
NEK3-203ENST00000551355 PRIM1P49642 420 aaKnown RBP13.34□□□□□ -0.27
NEK3-203ENST00000551355 RRP1P56182 461 aaKnown RBP13.34□□□□□ -0.27
NEK3-203ENST00000551355 PIGBQ92521 554 aa13.34□□□□□ -0.27
NEK3-203ENST00000551355 SMC4Q9NTJ3 1288 aa13.34□□□□□ -0.27
NEK3-203ENST00000551355 KIF16BQ96L93 1317 aa13.34□□□□□ -0.27
NEK3-203ENST00000551355 ELL2O00472 640 aaPredicted RBP13.33□□□□□ -0.28
NEK3-203ENST00000551355 GIGYF1O75420 1035 aaPredicted RBP13.33□□□□□ -0.28
NEK3-203ENST00000551355 FAM196AQ6ZSG2 479 aa13.33□□□□□ -0.28
NEK3-203ENST00000551355 KRT27Q7Z3Y8 459 aa13.33□□□□□ -0.28
NEK3-203ENST00000551355 VSIG10Q8N0Z9 540 aa13.33□□□□□ -0.28
NEK3-203ENST00000551355 SMARCC1Q92922 1105 aaPredicted RBP13.33□□□□□ -0.28
NEK3-203ENST00000551355 SYTL4Q96C24 671 aaPredicted RBP13.33□□□□□ -0.28
NEK3-203ENST00000551355 STK31Q9BXU1 1019 aa13.33□□□□□ -0.28
NEK3-203ENST00000551355 TEX13AQ9BXU3 409 aaPredicted RBP13.33□□□□□ -0.28
NEK3-203ENST00000551355 KCNQ3O43525 872 aa13.32□□□□□ -0.28
NEK3-203ENST00000551355 SLC39A6Q13433 755 aa13.32□□□□□ -0.28
NEK3-203ENST00000551355 SSH1Q8WYL5 1049 aa13.32□□□□□ -0.28
NEK3-203ENST00000551355 ARHGAP45Q92619 1136 aa13.32□□□□□ -0.28
NEK3-203ENST00000551355 ZNF496Q96IT1 587 aaPredicted RBP13.32□□□□□ -0.28
NEK3-203ENST00000551355 SIPA1L3O60292 1781 aaPredicted RBP13.31□□□□□ -0.28
NEK3-203ENST00000551355 BCAR3O75815 825 aa13.31□□□□□ -0.28
NEK3-203ENST00000551355 HMGB2P26583 209 aaKnown RBP13.31□□□□□ -0.28
NEK3-203ENST00000551355 CANXP27824 592 aaKnown RBP13.31□□□□□ -0.28
NEK3-203ENST00000551355 KRT24Q2M2I5 525 aa13.31□□□□□ -0.28
NEK3-203ENST00000551355 HDGFL1Q5TGJ6 251 aa13.31□□□□□ -0.28
NEK3-203ENST00000551355 ATG3Q9NT62 314 aa13.31□□□□□ -0.28
NEK3-203ENST00000551355 RGS17Q9UGC6 210 aaPredicted RBP13.31□□□□□ -0.28
NEK3-203ENST00000551355 KDM3BQ7LBC6 1761 aa13.3□□□□□ -0.28
NEK3-203ENST00000551355 PDE3AQ14432 1141 aa13.3□□□□□ -0.28
NEK3-203ENST00000551355 ERICH6BQ5W0A0 696 aa13.3□□□□□ -0.28
NEK3-203ENST00000551355 ILDR1Q86SU0 546 aaPredicted RBP13.3□□□□□ -0.28
NEK3-203ENST00000551355 ZKSCAN2Q63HK3 967 aa13.29□□□□□ -0.28
NEK3-203ENST00000551355 MRPL50Q8N5N7 158 aaKnown RBP13.29□□□□□ -0.28
NEK3-203ENST00000551355 ACSBG1Q96GR2 724 aa13.29□□□□□ -0.28
NEK3-203ENST00000551355 DBF4Q9UBU7 674 aaPredicted RBP13.29□□□□□ -0.28
NEK3-203ENST00000551355 ASAP1Q9ULH1 1129 aa13.29□□□□□ -0.28
NEK3-203ENST00000551355 PTPRCP08575 1304 aa13.29□□□□□ -0.28
NEK3-203ENST00000551355 ERBB4Q15303 1308 aa13.29□□□□□ -0.28
NEK3-203ENST00000551355 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
NEK3-203ENST00000551355 POTEAQ6S8J7 498 aa13.28□□□□□ -0.28
NEK3-203ENST00000551355 API5Q9BZZ5 524 aaKnown RBP13.28□□□□□ -0.28
NEK3-203ENST00000551355 BCL11BQ9C0K0 894 aaPredicted RBP13.28□□□□□ -0.28
NEK3-203ENST00000551355 TOGARAM1Q9Y4F4 1720 aa13.27□□□□□ -0.28
NEK3-203ENST00000551355 PTCD1O75127 700 aaKnown RBP13.27□□□□□ -0.29
NEK3-203ENST00000551355 STARD3NLO95772 234 aa13.27□□□□□ -0.29
NEK3-203ENST00000551355 EIF2S2P20042 333 aaKnown RBP13.27□□□□□ -0.29
NEK3-203ENST00000551355 ATF7IPQ6VMQ6 1270 aa13.27□□□□□ -0.29
NEK3-203ENST00000551355 FRAT1Q92837 279 aaPredicted RBP13.27□□□□□ -0.29
NEK3-203ENST00000551355 BCL2L13Q9BXK5 485 aa13.27□□□□□ -0.29
NEK3-203ENST00000551355 HYPKQ9NX55 129 aa13.27□□□□□ -0.29
NEK3-203ENST00000551355 NOB1Q9ULX3 412 aaKnown RBP13.27□□□□□ -0.29
NEK3-203ENST00000551355 KCPQ6ZWJ8 1503 aa13.26□□□□□ -0.29
NEK3-203ENST00000551355 RBM42Q9BTD8 480 aaKnown RBP13.26□□□□□ -0.29
NEK3-203ENST00000551355 DDX21Q9NR30 783 aaKnown RBP eCLIP13.26□□□□□ -0.29
NEK3-203ENST00000551355 PAPPAQ13219 1627 aa13.25□□□□□ -0.29
NEK3-203ENST00000551355 PALLDQ8WX93 1383 aa13.25□□□□□ -0.29
NEK3-203ENST00000551355 KCNQ2O43526 872 aa13.25□□□□□ -0.29
NEK3-203ENST00000551355 FTSJ3Q8IY81 847 aaKnown RBP13.25□□□□□ -0.29
NEK3-203ENST00000551355 VIRMAQ69YN4 1812 aaKnown RBP13.25□□□□□ -0.29
NEK3-203ENST00000551355 DOT1LQ8TEK3 1739 aa13.25□□□□□ -0.29
NEK3-203ENST00000551355 LOC102724428A0A0B4J2F2 783 aa13.24□□□□□ -0.29
NEK3-203ENST00000551355 SIK1P57059 783 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms