RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 CSB-PGBD3P0DP91 1061 aa10.82□□□□□ -0.68
NEK3-201ENST00000550331 ARSIQ5FYB1 569 aa10.82□□□□□ -0.68
NEK3-201ENST00000550331 PTF1AQ7RTS3 328 aa10.82□□□□□ -0.68
NEK3-201ENST00000550331 SYT17Q9BSW7 474 aa10.82□□□□□ -0.68
NEK3-201ENST00000550331 FHDC1Q9C0D6 1143 aaPredicted RBP10.82□□□□□ -0.68
NEK3-201ENST00000550331 STK32BQ9NY57 414 aa10.82□□□□□ -0.68
NEK3-201ENST00000550331 MON2Q7Z3U7 1717 aa10.81□□□□□ -0.68
NEK3-201ENST00000550331 TONSLQ96HA7 1378 aa10.81□□□□□ -0.68
NEK3-201ENST00000550331 SOX12O15370 315 aa10.81□□□□□ -0.68
NEK3-201ENST00000550331 RGS20O76081 388 aa10.81□□□□□ -0.68
NEK3-201ENST00000550331 IFFO2Q5TF58 517 aa10.81□□□□□ -0.68
NEK3-201ENST00000550331 PUS7Q96PZ0 661 aaKnown RBP10.81□□□□□ -0.68
NEK3-201ENST00000550331 USP54Q70EL1 1684 aa10.81□□□□□ -0.68
NEK3-201ENST00000550331 HDGFL2Q7Z4V5 671 aaPredicted RBP10.8□□□□□ -0.68
NEK3-201ENST00000550331 MARCH10Q8NA82 808 aaPredicted RBP10.8□□□□□ -0.68
NEK3-201ENST00000550331 MTFR1LQ9H019 292 aa10.8□□□□□ -0.68
NEK3-201ENST00000550331 TNS2Q63HR2 1409 aa10.8□□□□□ -0.68
NEK3-201ENST00000550331 EDC4Q6P2E9 1401 aaKnown RBP10.8□□□□□ -0.68
NEK3-201ENST00000550331 RGPD5Q99666 1765 aa10.8□□□□□ -0.68
NEK3-201ENST00000550331 SLC15A2Q16348 729 aa10.79□□□□□ -0.68
NEK3-201ENST00000550331 TXNRD1Q16881 649 aa10.79□□□□□ -0.68
NEK3-201ENST00000550331 MICALL2Q8IY33 904 aa10.79□□□□□ -0.68
NEK3-201ENST00000550331 IRX2Q9BZI1 471 aaPredicted RBP10.79□□□□□ -0.68
NEK3-201ENST00000550331 KAT6BQ8WYB5 2073 aa10.79□□□□□ -0.68
NEK3-201ENST00000550331 EXOC5O00471 708 aa10.78□□□□□ -0.68
NEK3-201ENST00000550331 NME9Q86XW9 330 aa10.78□□□□□ -0.68
NEK3-201ENST00000550331 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.78□□□□□ -0.68
NEK3-201ENST00000550331 TMC1Q8TDI8 760 aa10.78□□□□□ -0.68
NEK3-201ENST00000550331 TERF2IPQ9NYB0 399 aa10.78□□□□□ -0.68
NEK3-201ENST00000550331 A0A1W2PP64 1363 aa10.77□□□□□ -0.68
NEK3-201ENST00000550331 ARXQ96QS3 562 aa10.77□□□□□ -0.69
NEK3-201ENST00000550331 SLC12A5Q9H2X9 1139 aa10.77□□□□□ -0.69
NEK3-201ENST00000550331 SLC24A1O60721 1099 aa10.76□□□□□ -0.69
NEK3-201ENST00000550331 GIGYF1O75420 1035 aaPredicted RBP10.76□□□□□ -0.69
NEK3-201ENST00000550331 NHSQ6T4R5 1651 aa10.76□□□□□ -0.69
NEK3-201ENST00000550331 IL2RBP14784 551 aa10.75□□□□□ -0.69
NEK3-201ENST00000550331 GPR162Q16538 588 aa10.75□□□□□ -0.69
NEK3-201ENST00000550331 TESK2Q96S53 571 aa10.75□□□□□ -0.69
NEK3-201ENST00000550331 NLRP2Q9NX02 1062 aa10.75□□□□□ -0.69
NEK3-201ENST00000550331 MAP3K5Q99683 1374 aa10.75□□□□□ -0.69
NEK3-201ENST00000550331 ANKRD24Q8TF21 1146 aa10.74□□□□□ -0.69
NEK3-201ENST00000550331 BTAF1O14981 1849 aa10.74□□□□□ -0.69
NEK3-201ENST00000550331 PAPPAQ13219 1627 aa10.73□□□□□ -0.69
NEK3-201ENST00000550331 CEP350Q5VT06 3117 aa10.73□□□□□ -0.69
NEK3-201ENST00000550331 GOLGB1Q14789 3259 aaKnown RBP10.73□□□□□ -0.69
NEK3-201ENST00000550331 ST20-MTHFSA0A0A6YYL1 179 aa10.72□□□□□ -0.69
NEK3-201ENST00000550331 KLHL34Q8N239 644 aa10.72□□□□□ -0.69
NEK3-201ENST00000550331 IP6K1Q92551 441 aa10.72□□□□□ -0.69
NEK3-201ENST00000550331 SHANK3Q9BYB0 1731 aa10.72□□□□□ -0.69
NEK3-201ENST00000550331 LTN1O94822 1766 aa10.71□□□□□ -0.69
NEK3-201ENST00000550331 ANKRD36BQ8N2N9 1353 aa10.71□□□□□ -0.69
NEK3-201ENST00000550331 KHSRPQ92945 711 aaKnown RBP eCLIP10.71□□□□□ -0.69
NEK3-201ENST00000550331 ACSBG1Q96GR2 724 aa10.71□□□□□ -0.69
NEK3-201ENST00000550331 COG3Q96JB2 828 aa10.71□□□□□ -0.69
NEK3-201ENST00000550331 QSER1Q2KHR3 1735 aa10.7□□□□□ -0.7
NEK3-201ENST00000550331 FAM208AQ9UK61 1670 aaKnown RBP10.7□□□□□ -0.7
NEK3-201ENST00000550331 POTEEQ6S8J3 1075 aa10.7□□□□□ -0.7
NEK3-201ENST00000550331 TUBGCP6Q96RT7 1819 aa10.7□□□□□ -0.7
NEK3-201ENST00000550331 RTL1A6NKG5 1358 aa10.69□□□□□ -0.7
NEK3-201ENST00000550331 MAP3K19Q56UN5 1328 aa10.69□□□□□ -0.7
NEK3-201ENST00000550331 ZNF827Q17R98 1081 aa10.69□□□□□ -0.7
NEK3-201ENST00000550331 COL24A1Q17RW2 1714 aa10.69□□□□□ -0.7
NEK3-201ENST00000550331 POLD1P28340 1107 aa10.68□□□□□ -0.7
NEK3-201ENST00000550331 HOXC9P31274 260 aa10.68□□□□□ -0.7
NEK3-201ENST00000550331 TMF1P82094 1093 aa10.68□□□□□ -0.7
NEK3-201ENST00000550331 ADGRD1Q6QNK2 874 aa10.68□□□□□ -0.7
NEK3-201ENST00000550331 USP47Q96K76 1375 aa10.67□□□□□ -0.7
NEK3-201ENST00000550331 AMPHP49418 695 aa10.67□□□□□ -0.7
NEK3-201ENST00000550331 TRIM26Q12899 539 aaPredicted RBP10.67□□□□□ -0.7
NEK3-201ENST00000550331 LTV1Q96GA3 475 aaPredicted RBP10.67□□□□□ -0.7
NEK3-201ENST00000550331 CDCA8Q53HL2 280 aa10.66□□□□□ -0.7
NEK3-201ENST00000550331 EFCAB3Q8N7B9 438 aa10.66□□□□□ -0.7
NEK3-201ENST00000550331 DDX54Q8TDD1 881 aaKnown RBP10.66□□□□□ -0.7
NEK3-201ENST00000550331 SLC16A10Q8TF71 515 aa10.66□□□□□ -0.7
NEK3-201ENST00000550331 LRRC4BQ9NT99 713 aa10.66□□□□□ -0.7
NEK3-201ENST00000550331 CGNL1Q0VF96 1302 aa10.65□□□□□ -0.7
NEK3-201ENST00000550331 MEGF6O75095 1541 aa10.65□□□□□ -0.7
NEK3-201ENST00000550331 FYB1O15117 783 aa10.65□□□□□ -0.7
NEK3-201ENST00000550331 SLC27A3Q5K4L6 730 aa10.65□□□□□ -0.7
NEK3-201ENST00000550331 NLGN2Q8NFZ4 835 aa10.65□□□□□ -0.7
NEK3-201ENST00000550331 SMG6Q86US8 1419 aaKnown RBP10.65□□□□□ -0.7
NEK3-201ENST00000550331 KIF24Q5T7B8 1368 aa10.65□□□□□ -0.71
NEK3-201ENST00000550331 PNPLA7Q6ZV29 1317 aa10.64□□□□□ -0.71
NEK3-201ENST00000550331 GRIN3BO60391 1043 aa10.64□□□□□ -0.71
NEK3-201ENST00000550331 FBXO3Q9UK99 471 aa10.64□□□□□ -0.71
NEK3-201ENST00000550331 NSD2O96028 1365 aa10.64□□□□□ -0.71
NEK3-201ENST00000550331 FBLN1P23142 703 aa10.63□□□□□ -0.71
NEK3-201ENST00000550331 RRS1Q15050 365 aaKnown RBP10.63□□□□□ -0.71
NEK3-201ENST00000550331 ZCRB1Q8TBF4 217 aaKnown RBP10.63□□□□□ -0.71
NEK3-201ENST00000550331 GGNBP2Q9H3C7 697 aa10.63□□□□□ -0.71
NEK3-201ENST00000550331 TFCP2L1Q9NZI6 479 aa10.63□□□□□ -0.71
NEK3-201ENST00000550331 TIMELESSQ9UNS1 1208 aa10.63□□□□□ -0.71
NEK3-201ENST00000550331 ATP10DQ9P241 1426 aa10.63□□□□□ -0.71
NEK3-201ENST00000550331 INSRP06213 1382 aa10.63□□□□□ -0.71
NEK3-201ENST00000550331 FLT4P35916 1363 aa10.63□□□□□ -0.71
NEK3-201ENST00000550331 YBX3P16989 372 aaKnown RBP eCLIP10.62□□□□□ -0.71
NEK3-201ENST00000550331 PRIM1P49642 420 aaKnown RBP10.62□□□□□ -0.71
NEK3-201ENST00000550331 NBPF6Q5VWK0 638 aa10.62□□□□□ -0.71
NEK3-201ENST00000550331 SYTL4Q96C24 671 aaPredicted RBP10.62□□□□□ -0.71
NEK3-201ENST00000550331 NBPF4Q96M43 638 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms