RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 ATG3Q9NT62 314 aa34.48■■■■□ 3.11
CPSF6-205ENST00000550075 NFATC2IPQ8NCF5 419 aa34.47■■■■□ 3.11
CPSF6-205ENST00000550075 QSER1Q2KHR3 1735 aa34.47■■■■□ 3.11
CPSF6-205ENST00000550075 CASZ1Q86V15 1759 aa34.46■■■■□ 3.11
CPSF6-205ENST00000550075 LOC102724428A0A0B4J2F2 783 aa34.46■■■■□ 3.11
CPSF6-205ENST00000550075 SIK1P57059 783 aa34.46■■■■□ 3.11
CPSF6-205ENST00000550075 LGR6Q9HBX8 967 aa34.46■■■■□ 3.11
CPSF6-205ENST00000550075 ZNF827Q17R98 1081 aa34.45■■■■□ 3.11
CPSF6-205ENST00000550075 ZNF831Q5JPB2 1677 aa34.44■■■■□ 3.1
CPSF6-205ENST00000550075 AKT1S1Q96B36 256 aa34.44■■■■□ 3.1
CPSF6-205ENST00000550075 MAPK8IP3Q9UPT6 1336 aa34.44■■■■□ 3.1
CPSF6-205ENST00000550075 WDR43Q15061 677 aaKnown RBP eCLIP34.43■■■■□ 3.1
CPSF6-205ENST00000550075 TEFQ10587 303 aa34.42■■■■□ 3.1
CPSF6-205ENST00000550075 RTF1Q92541 710 aaKnown RBP34.41■■■■□ 3.1
CPSF6-205ENST00000550075 TFCP2L1Q9NZI6 479 aa34.41■■■■□ 3.1
CPSF6-205ENST00000550075 C4BP0C0L5 1744 aa34.41■■■■□ 3.1
CPSF6-205ENST00000550075 TUBGCP6Q96RT7 1819 aa34.4■■■■□ 3.1
CPSF6-205ENST00000550075 ANP32CO43423 234 aa34.4■■■■□ 3.1
CPSF6-205ENST00000550075 RBM42Q9BTD8 480 aaKnown RBP34.4■■■■□ 3.1
CPSF6-205ENST00000550075 ATP6V1AP38606 617 aa34.39■■■■□ 3.1
CPSF6-205ENST00000550075 CEMIPQ8WUJ3 1361 aa34.37■■■■□ 3.09
CPSF6-205ENST00000550075 PLEKHF1Q96S99 279 aa34.37■■■■□ 3.09
CPSF6-205ENST00000550075 SIPA1L3O60292 1781 aaPredicted RBP34.36■■■■□ 3.09
CPSF6-205ENST00000550075 HTATSF1O43719 755 aaKnown RBP34.36■■■■□ 3.09
CPSF6-205ENST00000550075 IL17REQ8NFR9 667 aa34.36■■■■□ 3.09
CPSF6-205ENST00000550075 AK7Q96M32 723 aa34.36■■■■□ 3.09
CPSF6-205ENST00000550075 SPON1Q9HCB6 807 aa34.34■■■■□ 3.09
CPSF6-205ENST00000550075 DLG5Q8TDM6 1919 aa34.34■■■■□ 3.09
CPSF6-205ENST00000550075 CICQ96RK0 1608 aaPredicted RBP34.33■■■■□ 3.09
CPSF6-205ENST00000550075 PTCD1O75127 700 aaKnown RBP34.33■■■■□ 3.09
CPSF6-205ENST00000550075 NFE2L2Q16236 605 aa34.33■■■■□ 3.09
CPSF6-205ENST00000550075 COL5A3P25940 1745 aaPredicted RBP34.32■■■■□ 3.08
CPSF6-205ENST00000550075 PNPLA7Q6ZV29 1317 aa34.31■■■■□ 3.08
CPSF6-205ENST00000550075 ITPK1Q13572 414 aa34.31■■■■□ 3.08
CPSF6-205ENST00000550075 TTC5Q8N0Z6 440 aa34.31■■■■□ 3.08
CPSF6-205ENST00000550075 LINC00116Q8NCU8 138 aa34.31■■■■□ 3.08
CPSF6-205ENST00000550075 FLAD1Q8NFF5 587 aa34.31■■■■□ 3.08
CPSF6-205ENST00000550075 UBR2Q8IWV8 1755 aa34.3■■■■□ 3.08
CPSF6-205ENST00000550075 PDGFDQ9GZP0 370 aaPredicted RBP34.29■■■■□ 3.08
CPSF6-205ENST00000550075 UBR3Q6ZT12 1888 aa34.29■■■■□ 3.08
CPSF6-205ENST00000550075 SLC16A10Q8TF71 515 aa34.28■■■■□ 3.08
CPSF6-205ENST00000550075 MTFR1LQ9H019 292 aa34.28■■■■□ 3.08
CPSF6-205ENST00000550075 KCPQ6ZWJ8 1503 aa34.28■■■■□ 3.08
CPSF6-205ENST00000550075 TJP1Q07157 1748 aa34.27■■■■□ 3.08
CPSF6-205ENST00000550075 ZBTB7AO95365 584 aa34.27■■■■□ 3.08
CPSF6-205ENST00000550075 SLC39A6Q13433 755 aa34.27■■■■□ 3.08
CPSF6-205ENST00000550075 MCM10Q7L590 875 aa34.27■■■■□ 3.08
CPSF6-205ENST00000550075 SLC4A9Q96Q91 983 aa34.27■■■■□ 3.08
CPSF6-205ENST00000550075 SRCAPQ6ZRS2 3230 aa34.25■■■■□ 3.07
CPSF6-205ENST00000550075 RUNDC1Q96C34 613 aa34.24■■■■□ 3.07
CPSF6-205ENST00000550075 CNTNAP4Q9C0A0 1308 aa34.24■■■■□ 3.07
CPSF6-205ENST00000550075 GNPATO15228 680 aa34.23■■■■□ 3.07
CPSF6-205ENST00000550075 MSH5O43196 834 aa34.23■■■■□ 3.07
CPSF6-205ENST00000550075 ADAMTS8Q9UP79 889 aa34.23■■■■□ 3.07
CPSF6-205ENST00000550075 BTBD11A6QL63 1104 aa34.22■■■■□ 3.07
CPSF6-205ENST00000550075 SSFA2P28290 1259 aa34.22■■■■□ 3.07
CPSF6-205ENST00000550075 LMOD3Q0VAK6 560 aa34.22■■■■□ 3.07
CPSF6-205ENST00000550075 RC3H1Q5TC82 1133 aaKnown RBP34.22■■■■□ 3.07
CPSF6-205ENST00000550075 ZNF790Q6PG37 636 aa34.22■■■■□ 3.07
CPSF6-205ENST00000550075 DCTN1Q14203 1278 aa34.21■■■■□ 3.07
CPSF6-205ENST00000550075 CCDC146Q8IYE0 955 aa34.21■■■■□ 3.07
CPSF6-205ENST00000550075 VSIG10Q8N0Z9 540 aa34.21■■■■□ 3.07
CPSF6-205ENST00000550075 PPP1R1BQ9UD71 204 aaPredicted RBP34.2■■■■□ 3.07
CPSF6-205ENST00000550075 COL23A1Q86Y22 540 aaPredicted RBP34.19■■■■□ 3.06
CPSF6-205ENST00000550075 ATF5Q9Y2D1 282 aaPredicted RBP34.19■■■■□ 3.06
CPSF6-205ENST00000550075 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP34.18■■■■□ 3.06
CPSF6-205ENST00000550075 PHF14O94880 888 aa34.18■■■■□ 3.06
CPSF6-205ENST00000550075 TMPOP42166 694 aaKnown RBP34.18■■■■□ 3.06
CPSF6-205ENST00000550075 RTCBQ9Y3I0 505 aaKnown RBP34.18■■■■□ 3.06
CPSF6-205ENST00000550075 RIPK4P57078 832 aa34.17■■■■□ 3.06
CPSF6-205ENST00000550075 MRS2Q9HD23 443 aa34.17■■■■□ 3.06
CPSF6-205ENST00000550075 DNAJC10Q8IXB1 793 aa34.16■■■■□ 3.06
CPSF6-205ENST00000550075 FMNL2Q96PY5 1086 aa34.16■■■■□ 3.06
CPSF6-205ENST00000550075 HEG1Q9ULI3 1381 aa34.15■■■■□ 3.06
CPSF6-205ENST00000550075 CRKLP46109 303 aaKnown RBP34.15■■■■□ 3.06
CPSF6-205ENST00000550075 TAF7Q15545 349 aaPredicted RBP34.15■■■■□ 3.06
CPSF6-205ENST00000550075 PNISRQ8TF01 805 aaKnown RBP34.15■■■■□ 3.06
CPSF6-205ENST00000550075 MYH14Q7Z406 1995 aaKnown RBP34.14■■■■□ 3.06
CPSF6-205ENST00000550075 ZNF496Q96IT1 587 aaPredicted RBP34.14■■■■□ 3.06
CPSF6-205ENST00000550075 COL24A1Q17RW2 1714 aa34.13■■■■□ 3.05
CPSF6-205ENST00000550075 ADRA2BP18089 450 aa34.13■■■■□ 3.05
CPSF6-205ENST00000550075 RPS6KA4O75676 772 aa34.12■■■■□ 3.05
CPSF6-205ENST00000550075 POLD1P28340 1107 aa34.12■■■■□ 3.05
CPSF6-205ENST00000550075 PTGER2P43116 358 aa34.12■■■■□ 3.05
CPSF6-205ENST00000550075 TEX13AQ9BXU3 409 aaPredicted RBP34.12■■■■□ 3.05
CPSF6-205ENST00000550075 CCDC184Q52MB2 194 aa34.11■■■■□ 3.05
CPSF6-205ENST00000550075 CCDC87Q9NVE4 849 aa34.11■■■■□ 3.05
CPSF6-205ENST00000550075 STARD3NLO95772 234 aa34.1■■■■□ 3.05
CPSF6-205ENST00000550075 AMIGO3Q86WK7 504 aa34.1■■■■□ 3.05
CPSF6-205ENST00000550075 RRP7AQ9Y3A4 280 aaKnown RBP34.1■■■■□ 3.05
CPSF6-205ENST00000550075 KDM3BQ7LBC6 1761 aa34.09■■■■□ 3.05
CPSF6-205ENST00000550075 CYP19A1P11511 503 aaPredicted RBP34.09■■■■□ 3.05
CPSF6-205ENST00000550075 TRAPPC3LQ5T215 181 aa34.09■■■■□ 3.05
CPSF6-205ENST00000550075 NEUROD2Q15784 382 aa34.08■■■■□ 3.05
CPSF6-205ENST00000550075 SGIP1Q9BQI5 828 aa34.08■■■■□ 3.05
CPSF6-205ENST00000550075 THUMPD2Q9BTF0 503 aaKnown RBP34.08■■■■□ 3.05
CPSF6-205ENST00000550075 KCNQ3O43525 872 aa34.06■■■■□ 3.04
CPSF6-205ENST00000550075 C4AP0C0L4 1744 aa34.05■■■■□ 3.04
CPSF6-205ENST00000550075 INTS5Q6P9B9 1019 aaKnown RBP34.04■■■■□ 3.04
CPSF6-205ENST00000550075 SMIM5Q71RC9 77 aa34.04■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms