RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 BTAF1O14981 1849 aa27.78■■■□□ 2.04
VPS29-206ENST00000549578 HNRNPUQ00839 825 aaKnown RBP eCLIP27.77■■■□□ 2.04
VPS29-206ENST00000549578 NCBP3Q53F19 620 aaKnown RBP27.77■■■□□ 2.04
VPS29-206ENST00000549578 TNS1Q9HBL0 1735 aaKnown RBP27.77■■■□□ 2.04
VPS29-206ENST00000549578 NGEFQ8N5V2 710 aa27.76■■■□□ 2.03
VPS29-206ENST00000549578 TAF7Q15545 349 aaPredicted RBP27.72■■■□□ 2.03
VPS29-206ENST00000549578 ASAP1Q9ULH1 1129 aa27.72■■■□□ 2.03
VPS29-206ENST00000549578 MIS18AQ9NYP9 233 aa27.72■■■□□ 2.03
VPS29-206ENST00000549578 BTBD11A6QL63 1104 aa27.71■■■□□ 2.03
VPS29-206ENST00000549578 APBA3O96018 575 aa27.71■■■□□ 2.03
VPS29-206ENST00000549578 SLC39A6Q13433 755 aa27.71■■■□□ 2.03
VPS29-206ENST00000549578 ATG3Q9NT62 314 aa27.71■■■□□ 2.03
VPS29-206ENST00000549578 ZNF521Q96K83 1311 aa27.7■■■□□ 2.02
VPS29-206ENST00000549578 LAS1LQ9Y4W2 734 aaKnown RBP27.7■■■□□ 2.02
VPS29-206ENST00000549578 PAPPAQ13219 1627 aa27.7■■■□□ 2.02
VPS29-206ENST00000549578 CALD1Q05682 793 aaKnown RBP27.69■■■□□ 2.02
VPS29-206ENST00000549578 UPF1Q92900 1129 aaKnown RBP eCLIP27.68■■■□□ 2.02
VPS29-206ENST00000549578 SF3B2Q13435 895 aaKnown RBP27.67■■■□□ 2.02
VPS29-206ENST00000549578 WDR63Q8IWG1 891 aa27.67■■■□□ 2.02
VPS29-206ENST00000549578 PALLDQ8WX93 1383 aa27.67■■■□□ 2.02
VPS29-206ENST00000549578 KCNQ3O43525 872 aa27.67■■■□□ 2.02
VPS29-206ENST00000549578 ZNF790Q6PG37 636 aa27.66■■■□□ 2.02
VPS29-206ENST00000549578 TSPYL4Q9UJ04 414 aa27.66■■■□□ 2.02
VPS29-206ENST00000549578 KDM3BQ7LBC6 1761 aa27.65■■■□□ 2.02
VPS29-206ENST00000549578 CCDC125Q86Z20 511 aa27.65■■■□□ 2.02
VPS29-206ENST00000549578 CFAP44Q96MT7 982 aa27.65■■■□□ 2.02
VPS29-206ENST00000549578 YTHDC1Q96MU7 727 aaKnown RBP27.65■■■□□ 2.02
VPS29-206ENST00000549578 IFT57Q9NWB7 429 aa27.65■■■□□ 2.02
VPS29-206ENST00000549578 CHL1O00533 1208 aa27.64■■■□□ 2.02
VPS29-206ENST00000549578 ZNF853P0CG23 659 aa27.64■■■□□ 2.02
VPS29-206ENST00000549578 TTC5Q8N0Z6 440 aa27.64■■■□□ 2.02
VPS29-206ENST00000549578 SMARCC1Q92922 1105 aaPredicted RBP27.64■■■□□ 2.02
VPS29-206ENST00000549578 IL16Q14005 1332 aa27.64■■■□□ 2.01
VPS29-206ENST00000549578 SPINK5Q9NQ38 1064 aaPredicted RBP27.63■■■□□ 2.01
VPS29-206ENST00000549578 KCPQ6ZWJ8 1503 aa27.62■■■□□ 2.01
VPS29-206ENST00000549578 PTCD1O75127 700 aaKnown RBP27.62■■■□□ 2.01
VPS29-206ENST00000549578 GNAI1P63096 354 aa27.62■■■□□ 2.01
VPS29-206ENST00000549578 DEFB132Q7Z7B7 95 aa27.62■■■□□ 2.01
VPS29-206ENST00000549578 UBR2Q8IWV8 1755 aa27.62■■■□□ 2.01
VPS29-206ENST00000549578 PLSCR1O15162 318 aa27.62■■■□□ 2.01
VPS29-206ENST00000549578 MBIPQ9NS73 344 aa27.62■■■□□ 2.01
VPS29-206ENST00000549578 BABAM1Q9NWV8 329 aa27.62■■■□□ 2.01
VPS29-206ENST00000549578 LY75O60449 1722 aa27.61■■■□□ 2.01
VPS29-206ENST00000549578 BAG6P46379 1132 aa27.61■■■□□ 2.01
VPS29-206ENST00000549578 EN1Q05925 392 aaPredicted RBP27.61■■■□□ 2.01
VPS29-206ENST00000549578 RBM42Q9BTD8 480 aaKnown RBP27.61■■■□□ 2.01
VPS29-206ENST00000549578 ZBED9Q6R2W3 1325 aa27.6■■■□□ 2.01
VPS29-206ENST00000549578 GOLGA2Q08379 1002 aa27.6■■■□□ 2.01
VPS29-206ENST00000549578 TSR2Q969E8 191 aaKnown RBP27.6■■■□□ 2.01
VPS29-206ENST00000549578 ZNF496Q96IT1 587 aaPredicted RBP27.6■■■□□ 2.01
VPS29-206ENST00000549578 LOC102724428A0A0B4J2F2 783 aa27.58■■■□□ 2.01
VPS29-206ENST00000549578 SIK1P57059 783 aa27.58■■■□□ 2.01
VPS29-206ENST00000549578 CDCA7LQ96GN5 454 aa27.58■■■□□ 2.01
VPS29-206ENST00000549578 RGPD3A6NKT7 1758 aaPredicted RBP27.58■■■□□ 2.01
VPS29-206ENST00000549578 RGPD4Q7Z3J3 1758 aa27.58■■■□□ 2.01
VPS29-206ENST00000549578 KCNQ4P56696 695 aa27.57■■■□□ 2
VPS29-206ENST00000549578 SLC4A9Q96Q91 983 aa27.57■■■□□ 2
VPS29-206ENST00000549578 EZH2Q15910 746 aaKnown RBP27.57■■■□□ 2
VPS29-206ENST00000549578 CAMKK2Q96RR4 588 aa27.57■■■□□ 2
VPS29-206ENST00000549578 EIF4A1P60842 406 aaKnown RBP27.56■■■□□ 2
VPS29-206ENST00000549578 TXNRD1Q16881 649 aa27.56■■■□□ 2
VPS29-206ENST00000549578 PROM2Q8N271 834 aa27.56■■■□□ 2
VPS29-206ENST00000549578 FMNL2Q96PY5 1086 aa27.56■■■□□ 2
VPS29-206ENST00000549578 FANCIQ9NVI1 1328 aa27.55■■■□□ 2
VPS29-206ENST00000549578 CCNL1Q9UK58 526 aaPredicted RBP27.55■■■□□ 2
VPS29-206ENST00000549578 HEG1Q9ULI3 1381 aa27.54■■■□□ 2
VPS29-206ENST00000549578 E9PSI1 815 aa27.53■■■□□ 2
VPS29-206ENST00000549578 ATP6V1AP38606 617 aa27.53■■■□□ 2
VPS29-206ENST00000549578 SLFN5Q08AF3 891 aa27.53■■■□□ 2
VPS29-206ENST00000549578 KRT24Q2M2I5 525 aa27.53■■■□□ 2
VPS29-206ENST00000549578 MYH16Q9H6N6 1097 aa27.53■■■□□ 2
VPS29-206ENST00000549578 LRRC4BQ9NT99 713 aa27.53■■■□□ 2
VPS29-206ENST00000549578 ITPK1Q13572 414 aa27.51■■■□□ 2
VPS29-206ENST00000549578 TJP1Q07157 1748 aa27.51■■□□□ 1.99
VPS29-206ENST00000549578 PRAMEF22A3QJZ6 481 aa27.51■■□□□ 1.99
VPS29-206ENST00000549578 SLC27A3Q5K4L6 730 aa27.51■■□□□ 1.99
VPS29-206ENST00000549578 ZNF831Q5JPB2 1677 aa27.5■■□□□ 1.99
VPS29-206ENST00000549578 VSIG10Q8N0Z9 540 aa27.5■■□□□ 1.99
VPS29-206ENST00000549578 C5P01031 1676 aa27.49■■□□□ 1.99
VPS29-206ENST00000549578 RREB1Q92766 1687 aa27.49■■□□□ 1.99
VPS29-206ENST00000549578 DNAJC10Q8IXB1 793 aa27.49■■□□□ 1.99
VPS29-206ENST00000549578 SNRPA1P09661 255 aaKnown RBP27.48■■□□□ 1.99
VPS29-206ENST00000549578 GIGYF1O75420 1035 aaPredicted RBP27.47■■□□□ 1.99
VPS29-206ENST00000549578 C8orf58Q8NAV2 365 aa27.47■■□□□ 1.99
VPS29-206ENST00000549578 CICQ96RK0 1608 aaPredicted RBP27.47■■□□□ 1.99
VPS29-206ENST00000549578 TRMT2AQ8IZ69 625 aaKnown RBP27.46■■□□□ 1.99
VPS29-206ENST00000549578 LINC00116Q8NCU8 138 aa27.46■■□□□ 1.99
VPS29-206ENST00000549578 TAF1LQ8IZX4 1826 aa27.46■■□□□ 1.99
VPS29-206ENST00000549578 ELL2O00472 640 aaPredicted RBP27.46■■□□□ 1.99
VPS29-206ENST00000549578 NUP188Q5SRE5 1749 aa27.45■■□□□ 1.98
VPS29-206ENST00000549578 EXOSC9Q06265 439 aaKnown RBP27.45■■□□□ 1.98
VPS29-206ENST00000549578 DUSP27Q5VZP5 1158 aa27.45■■□□□ 1.98
VPS29-206ENST00000549578 TSPYL6Q8N831 410 aa27.45■■□□□ 1.98
VPS29-206ENST00000549578 USP16Q9Y5T5 823 aa27.45■■□□□ 1.98
VPS29-206ENST00000549578 COL5A3P25940 1745 aaPredicted RBP27.44■■□□□ 1.98
VPS29-206ENST00000549578 SOCS7O14512 581 aa27.44■■□□□ 1.98
VPS29-206ENST00000549578 LAMB4A4D0S4 1761 aa27.43■■□□□ 1.98
VPS29-206ENST00000549578 CYP19A1P11511 503 aaPredicted RBP27.41■■□□□ 1.98
VPS29-206ENST00000549578 TEX13AQ9BXU3 409 aaPredicted RBP27.41■■□□□ 1.98
VPS29-206ENST00000549578 C4BP0C0L5 1744 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms