RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 KDM6AO15550 1401 aaPredicted RBP12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 SBF2Q86WG5 1849 aa12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 SIPA1L3O60292 1781 aaPredicted RBP12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 GOLGA2Q08379 1002 aa12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 TAF7Q15545 349 aaPredicted RBP12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 MPRIPQ6WCQ1 1025 aa12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 MYH16Q9H6N6 1097 aa12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 SLC52A2Q9HAB3 445 aa12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 IFT57Q9NWB7 429 aa12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 TMOD3Q9NYL9 352 aa12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 TRIM35Q9UPQ4 493 aa12.72□□□□□ -0.37
SMARCD1-206ENST00000549274 E9PSI1 815 aa12.71□□□□□ -0.37
SMARCD1-206ENST00000549274 SMARCC1Q92922 1105 aaPredicted RBP12.71□□□□□ -0.37
SMARCD1-206ENST00000549274 CFAP44Q96MT7 982 aa12.71□□□□□ -0.37
SMARCD1-206ENST00000549274 SOS1Q07889 1333 aaPredicted RBP12.7□□□□□ -0.38
SMARCD1-206ENST00000549274 IL17REQ8NFR9 667 aa12.7□□□□□ -0.38
SMARCD1-206ENST00000549274 TOGARAM1Q9Y4F4 1720 aa12.7□□□□□ -0.38
SMARCD1-206ENST00000549274 ZNF521Q96K83 1311 aa12.69□□□□□ -0.38
SMARCD1-206ENST00000549274 MCM10Q7L590 875 aa12.69□□□□□ -0.38
SMARCD1-206ENST00000549274 TTC5Q8N0Z6 440 aa12.69□□□□□ -0.38
SMARCD1-206ENST00000549274 BCL11BQ9C0K0 894 aaPredicted RBP12.69□□□□□ -0.38
SMARCD1-206ENST00000549274 BTBD11A6QL63 1104 aa12.68□□□□□ -0.38
SMARCD1-206ENST00000549274 TSPYL4Q9UJ04 414 aa12.68□□□□□ -0.38
SMARCD1-206ENST00000549274 SALL2Q9Y467 1007 aaPredicted RBP12.68□□□□□ -0.38
SMARCD1-206ENST00000549274 KDM3BQ7LBC6 1761 aa12.68□□□□□ -0.38
SMARCD1-206ENST00000549274 PAPPAQ13219 1627 aa12.67□□□□□ -0.38
SMARCD1-206ENST00000549274 PRIM1P49642 420 aaKnown RBP12.67□□□□□ -0.38
SMARCD1-206ENST00000549274 CCDC125Q86Z20 511 aa12.67□□□□□ -0.38
SMARCD1-206ENST00000549274 SYTL4Q96C24 671 aaPredicted RBP12.67□□□□□ -0.38
SMARCD1-206ENST00000549274 LGR6Q9HBX8 967 aa12.67□□□□□ -0.38
SMARCD1-206ENST00000549274 BTAF1O14981 1849 aa12.67□□□□□ -0.38
SMARCD1-206ENST00000549274 CHL1O00533 1208 aa12.66□□□□□ -0.38
SMARCD1-206ENST00000549274 CT47B1P0C2W7 299 aaPredicted RBP12.66□□□□□ -0.38
SMARCD1-206ENST00000549274 SF3B2Q13435 895 aaKnown RBP12.66□□□□□ -0.38
SMARCD1-206ENST00000549274 DCTN1Q14203 1278 aa12.66□□□□□ -0.38
SMARCD1-206ENST00000549274 NFATC2IPQ8NCF5 419 aa12.66□□□□□ -0.38
SMARCD1-206ENST00000549274 RGPD3A6NKT7 1758 aaPredicted RBP12.66□□□□□ -0.38
SMARCD1-206ENST00000549274 RGPD4Q7Z3J3 1758 aa12.66□□□□□ -0.38
SMARCD1-206ENST00000549274 ZNF831Q5JPB2 1677 aa12.65□□□□□ -0.38
SMARCD1-206ENST00000549274 HOXB7P09629 217 aa12.65□□□□□ -0.38
SMARCD1-206ENST00000549274 ZNF853P0CG23 659 aa12.65□□□□□ -0.38
SMARCD1-206ENST00000549274 CNKSR2Q8WXI2 1034 aa12.65□□□□□ -0.38
SMARCD1-206ENST00000549274 FMNL2Q96PY5 1086 aa12.65□□□□□ -0.38
SMARCD1-206ENST00000549274 LAS1LQ9Y4W2 734 aaKnown RBP12.65□□□□□ -0.38
SMARCD1-206ENST00000549274 UBR2Q8IWV8 1755 aa12.65□□□□□ -0.38
SMARCD1-206ENST00000549274 SLFN5Q08AF3 891 aa12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 ZNF790Q6PG37 636 aa12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 VSIG10Q8N0Z9 540 aa12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 PIGBQ92521 554 aa12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 ZNF428Q96B54 188 aa12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 ACSBG1Q96GR2 724 aa12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 YTHDC1Q96MU7 727 aaKnown RBP12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 TEX13AQ9BXU3 409 aaPredicted RBP12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 EP400Q96L91 3159 aa12.64□□□□□ -0.39
SMARCD1-206ENST00000549274 CACNA1FO60840 1977 aa12.63□□□□□ -0.39
SMARCD1-206ENST00000549274 THUMPD2Q9BTF0 503 aaKnown RBP12.63□□□□□ -0.39
SMARCD1-206ENST00000549274 CICQ96RK0 1608 aaPredicted RBP12.62□□□□□ -0.39
SMARCD1-206ENST00000549274 TNS1Q9HBL0 1735 aaKnown RBP12.62□□□□□ -0.39
SMARCD1-206ENST00000549274 FANCIQ9NVI1 1328 aa12.62□□□□□ -0.39
SMARCD1-206ENST00000549274 PALLDQ8WX93 1383 aa12.61□□□□□ -0.39
SMARCD1-206ENST00000549274 PLSCR1O15162 318 aa12.61□□□□□ -0.39
SMARCD1-206ENST00000549274 TRIM37O94972 964 aa12.61□□□□□ -0.39
SMARCD1-206ENST00000549274 SLC27A3Q5K4L6 730 aa12.61□□□□□ -0.39
SMARCD1-206ENST00000549274 MBIPQ9NS73 344 aa12.61□□□□□ -0.39
SMARCD1-206ENST00000549274 LY75O60449 1722 aa12.61□□□□□ -0.39
SMARCD1-206ENST00000549274 LAMB4A4D0S4 1761 aa12.61□□□□□ -0.39
SMARCD1-206ENST00000549274 HEG1Q9ULI3 1381 aa12.6□□□□□ -0.39
SMARCD1-206ENST00000549274 SNRPA1P09661 255 aaKnown RBP12.6□□□□□ -0.39
SMARCD1-206ENST00000549274 BAG6P46379 1132 aa12.6□□□□□ -0.39
SMARCD1-206ENST00000549274 EIF4A1P60842 406 aaKnown RBP12.6□□□□□ -0.39
SMARCD1-206ENST00000549274 FAM182BQ5T319 152 aa12.6□□□□□ -0.39
SMARCD1-206ENST00000549274 TRMT2AQ8IZ69 625 aaKnown RBP12.6□□□□□ -0.39
SMARCD1-206ENST00000549274 ATG3Q9NT62 314 aa12.6□□□□□ -0.39
SMARCD1-206ENST00000549274 KCPQ6ZWJ8 1503 aa12.59□□□□□ -0.39
SMARCD1-206ENST00000549274 KCNQ2O43526 872 aa12.59□□□□□ -0.39
SMARCD1-206ENST00000549274 STARD3NLO95772 234 aa12.59□□□□□ -0.39
SMARCD1-206ENST00000549274 DUSP27Q5VZP5 1158 aa12.59□□□□□ -0.39
SMARCD1-206ENST00000549274 ERBB4Q15303 1308 aa12.59□□□□□ -0.39
SMARCD1-206ENST00000549274 LOC102724428A0A0B4J2F2 783 aa12.58□□□□□ -0.4
SMARCD1-206ENST00000549274 APBA3O96018 575 aa12.58□□□□□ -0.4
SMARCD1-206ENST00000549274 CENPBP07199 599 aaPredicted RBP12.58□□□□□ -0.4
SMARCD1-206ENST00000549274 SIK1P57059 783 aa12.58□□□□□ -0.4
SMARCD1-206ENST00000549274 RBM42Q9BTD8 480 aaKnown RBP12.58□□□□□ -0.4
SMARCD1-206ENST00000549274 ASAP1Q9ULH1 1129 aa12.58□□□□□ -0.4
SMARCD1-206ENST00000549274 SLC39A6Q13433 755 aa12.57□□□□□ -0.4
SMARCD1-206ENST00000549274 TWISTNBQ3B726 338 aaPredicted RBP12.57□□□□□ -0.4
SMARCD1-206ENST00000549274 TSR2Q969E8 191 aaKnown RBP12.57□□□□□ -0.4
SMARCD1-206ENST00000549274 SENP3-EIF4A1A0A087X0R7 540 aa12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 PTCD1O75127 700 aaKnown RBP12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 GIGYF1O75420 1035 aaPredicted RBP12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 CCDC30Q5VVM6 783 aa12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 NPM2Q86SE8 214 aaKnown RBP12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 CDCA7LQ96GN5 454 aa12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 ZNF496Q96IT1 587 aaPredicted RBP12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 STK31Q9BXU1 1019 aa12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 MIS18AQ9NYP9 233 aa12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 C5P01031 1676 aa12.56□□□□□ -0.4
SMARCD1-206ENST00000549274 ATP6V1AP38606 617 aa12.55□□□□□ -0.4
SMARCD1-206ENST00000549274 EXOSC9Q06265 439 aaKnown RBP12.55□□□□□ -0.4
SMARCD1-206ENST00000549274 ALDH1L2Q3SY69 923 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 264.5 ms