RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PIP4K2AP48426 406 aaPredicted RBP13.84□□□□□ -0.19
CUX1-212ENST00000547394 PROSER3Q2NL68 480 aa13.84□□□□□ -0.19
CUX1-212ENST00000547394 PLEKHO1Q53GL0 409 aaPredicted RBP13.84□□□□□ -0.19
CUX1-212ENST00000547394 DCTPP1Q9H773 170 aa13.84□□□□□ -0.19
CUX1-212ENST00000547394 KIF24Q5T7B8 1368 aa13.83□□□□□ -0.19
CUX1-212ENST00000547394 DEKP35659 375 aaKnown RBP13.83□□□□□ -0.2
CUX1-212ENST00000547394 EIF4A1P60842 406 aaKnown RBP13.83□□□□□ -0.2
CUX1-212ENST00000547394 TBC1D2Q9BYX2 928 aa13.83□□□□□ -0.2
CUX1-212ENST00000547394 CHMP4BQ9H444 224 aaKnown RBP13.83□□□□□ -0.2
CUX1-212ENST00000547394 PLEKHM2Q8IWE5 1019 aa13.83□□□□□ -0.2
CUX1-212ENST00000547394 LRRFIP2Q9Y608 721 aaKnown RBP13.83□□□□□ -0.2
CUX1-212ENST00000547394 NFKBIBQ15653 356 aa13.82□□□□□ -0.2
CUX1-212ENST00000547394 TBC1D9Q6ZT07 1266 aa13.82□□□□□ -0.2
CUX1-212ENST00000547394 RNMTO43148 476 aaKnown RBP13.82□□□□□ -0.2
CUX1-212ENST00000547394 FRAT2O75474 233 aaPredicted RBP13.81□□□□□ -0.2
CUX1-212ENST00000547394 AKAP4Q5JQC9 854 aa13.81□□□□□ -0.2
CUX1-212ENST00000547394 ERBB3P21860 1342 aa13.81□□□□□ -0.2
CUX1-212ENST00000547394 ZNF335Q9H4Z2 1342 aaPredicted RBP13.81□□□□□ -0.2
CUX1-212ENST00000547394 MST1RQ04912 1400 aa13.81□□□□□ -0.2
CUX1-212ENST00000547394 VIRMAQ69YN4 1812 aaKnown RBP13.81□□□□□ -0.2
CUX1-212ENST00000547394 PI4KAP2A4QPH2 592 aa13.81□□□□□ -0.2
CUX1-212ENST00000547394 PI4KAP1Q8N8J0 262 aa13.81□□□□□ -0.2
CUX1-212ENST00000547394 RBM42Q9BTD8 480 aaKnown RBP13.81□□□□□ -0.2
CUX1-212ENST00000547394 CEMIPQ8WUJ3 1361 aa13.8□□□□□ -0.2
CUX1-212ENST00000547394 STRCP1A6NGW2 1772 aa13.8□□□□□ -0.2
CUX1-212ENST00000547394 CCT4P50991 539 aaKnown RBP13.8□□□□□ -0.2
CUX1-212ENST00000547394 AIMP1Q12904 312 aaKnown RBP13.8□□□□□ -0.2
CUX1-212ENST00000547394 BMP2KLQ5H9B9 411 aa13.8□□□□□ -0.2
CUX1-212ENST00000547394 RPAP2Q8IXW5 612 aaPredicted RBP13.8□□□□□ -0.2
CUX1-212ENST00000547394 GNAI2P04899 355 aa13.79□□□□□ -0.2
CUX1-212ENST00000547394 USP44Q9H0E7 712 aa13.79□□□□□ -0.2
CUX1-212ENST00000547394 FOXD4L1Q9NU39 408 aa13.79□□□□□ -0.2
CUX1-212ENST00000547394 NBPF7P0C2Y1 421 aaPredicted RBP13.79□□□□□ -0.2
CUX1-212ENST00000547394 RAPGEF4Q8WZA2 1011 aa13.79□□□□□ -0.2
CUX1-212ENST00000547394 RGPD5Q99666 1765 aa13.78□□□□□ -0.2
CUX1-212ENST00000547394 IL1RAPL2Q9NP60 686 aa13.78□□□□□ -0.2
CUX1-212ENST00000547394 KDM4FA0A1W2PPD8 638 aa13.78□□□□□ -0.2
CUX1-212ENST00000547394 NFATC2IPQ8NCF5 419 aa13.78□□□□□ -0.2
CUX1-212ENST00000547394 MED1Q15648 1581 aaPredicted RBP13.78□□□□□ -0.2
CUX1-212ENST00000547394 BECN1Q14457 450 aa13.77□□□□□ -0.2
CUX1-212ENST00000547394 CADPS2Q86UW7 1296 aa13.77□□□□□ -0.2
CUX1-212ENST00000547394 BRINP3Q76B58 766 aa13.77□□□□□ -0.21
CUX1-212ENST00000547394 MYL6BP14649 208 aa13.77□□□□□ -0.21
CUX1-212ENST00000547394 USP35Q9P2H5 1018 aa13.77□□□□□ -0.21
CUX1-212ENST00000547394 CD2BP2O95400 341 aaKnown RBP13.76□□□□□ -0.21
CUX1-212ENST00000547394 UBTFL1P0CB47 393 aaPredicted RBP13.76□□□□□ -0.21
CUX1-212ENST00000547394 CWF19L2Q2TBE0 894 aaKnown RBP13.76□□□□□ -0.21
CUX1-212ENST00000547394 AMOTQ4VCS5 1084 aa13.76□□□□□ -0.21
CUX1-212ENST00000547394 LRRC37A3O60309 1634 aa13.76□□□□□ -0.21
CUX1-212ENST00000547394 SDSP20132 328 aa13.76□□□□□ -0.21
CUX1-212ENST00000547394 TTC22Q5TAA0 569 aa13.76□□□□□ -0.21
CUX1-212ENST00000547394 JARID2Q92833 1246 aaPredicted RBP13.76□□□□□ -0.21
CUX1-212ENST00000547394 NPHP3Q7Z494 1330 aa13.75□□□□□ -0.21
CUX1-212ENST00000547394 SLIT3O75094 1523 aa13.75□□□□□ -0.21
CUX1-212ENST00000547394 GIGYF1O75420 1035 aaPredicted RBP13.75□□□□□ -0.21
CUX1-212ENST00000547394 USP54Q70EL1 1684 aa13.75□□□□□ -0.21
CUX1-212ENST00000547394 TRPM3Q9HCF6 1732 aaPredicted RBP13.74□□□□□ -0.21
CUX1-212ENST00000547394 MAP4K4O95819 1239 aaPredicted RBP13.74□□□□□ -0.21
CUX1-212ENST00000547394 SRCIN1Q9C0H9 1055 aa13.74□□□□□ -0.21
CUX1-212ENST00000547394 HMMRO75330 724 aa13.74□□□□□ -0.21
CUX1-212ENST00000547394 STRN4Q9NRL3 753 aa13.74□□□□□ -0.21
CUX1-212ENST00000547394 MAP3K2Q9Y2U5 619 aa13.74□□□□□ -0.21
CUX1-212ENST00000547394 MEGF6O75095 1541 aa13.74□□□□□ -0.21
CUX1-212ENST00000547394 PPP1R42Q7Z4L9 355 aa13.73□□□□□ -0.21
CUX1-212ENST00000547394 NUTM1Q86Y26 1132 aa13.73□□□□□ -0.21
CUX1-212ENST00000547394 DNAAF4Q8WXU2 420 aa13.73□□□□□ -0.21
CUX1-212ENST00000547394 CYP27B1O15528 508 aa13.73□□□□□ -0.21
CUX1-212ENST00000547394 CDC45O75419 566 aa13.73□□□□□ -0.21
CUX1-212ENST00000547394 GNAI3P08754 354 aa13.73□□□□□ -0.21
CUX1-212ENST00000547394 TATP17735 454 aaPredicted RBP13.73□□□□□ -0.21
CUX1-212ENST00000547394 PRDM11Q9NQV5 511 aa13.73□□□□□ -0.21
CUX1-212ENST00000547394 SPATA31A3Q5VYP0 1347 aa13.72□□□□□ -0.21
CUX1-212ENST00000547394 FAM208AQ9UK61 1670 aaKnown RBP13.72□□□□□ -0.21
CUX1-212ENST00000547394 SRGAP3O43295 1099 aa13.72□□□□□ -0.21
CUX1-212ENST00000547394 KIF2CQ99661 725 aa13.72□□□□□ -0.21
CUX1-212ENST00000547394 ADCY9O60503 1353 aa13.72□□□□□ -0.21
CUX1-212ENST00000547394 SURF6O75683 361 aaKnown RBP13.72□□□□□ -0.21
CUX1-212ENST00000547394 PHKG2P15735 406 aa13.72□□□□□ -0.21
CUX1-212ENST00000547394 ATP8B2P98198 1209 aa13.72□□□□□ -0.21
CUX1-212ENST00000547394 BEND3Q5T5X7 828 aa13.72□□□□□ -0.21
CUX1-212ENST00000547394 ZNF496Q96IT1 587 aaPredicted RBP13.72□□□□□ -0.21
CUX1-212ENST00000547394 PDE1AP54750 535 aa13.71□□□□□ -0.21
CUX1-212ENST00000547394 SLAIN2Q9P270 581 aa13.71□□□□□ -0.21
CUX1-212ENST00000547394 ZNF790Q6PG37 636 aa13.71□□□□□ -0.22
CUX1-212ENST00000547394 TOM1L2Q6ZVM7 507 aa13.71□□□□□ -0.22
CUX1-212ENST00000547394 RILPL2Q969X0 211 aa13.71□□□□□ -0.22
CUX1-212ENST00000547394 LRRCC1Q9C099 1032 aa13.71□□□□□ -0.22
CUX1-212ENST00000547394 UNC5CLQ8IV45 518 aa13.7□□□□□ -0.22
CUX1-212ENST00000547394 DBF4Q9UBU7 674 aaPredicted RBP13.7□□□□□ -0.22
CUX1-212ENST00000547394 PA2G4Q9UQ80 394 aaKnown RBP13.7□□□□□ -0.22
CUX1-212ENST00000547394 USP16Q9Y5T5 823 aa13.7□□□□□ -0.22
CUX1-212ENST00000547394 KDM6AO15550 1401 aaPredicted RBP13.7□□□□□ -0.22
CUX1-212ENST00000547394 DDX54Q8TDD1 881 aaKnown RBP13.7□□□□□ -0.22
CUX1-212ENST00000547394 ANTXR1Q9H6X2 564 aa13.7□□□□□ -0.22
CUX1-212ENST00000547394 BABAM1Q9NWV8 329 aa13.7□□□□□ -0.22
CUX1-212ENST00000547394 SOS1Q07889 1333 aaPredicted RBP13.7□□□□□ -0.22
CUX1-212ENST00000547394 TNS3Q68CZ2 1445 aa13.7□□□□□ -0.22
CUX1-212ENST00000547394 TRIM6-TRIM34B2RNG4 842 aa13.69□□□□□ -0.22
CUX1-212ENST00000547394 SLC52A2Q9HAB3 445 aa13.69□□□□□ -0.22
CUX1-212ENST00000547394 HSCBQ8IWL3 235 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms