RNA–Protein interactions for RNA: ENST00000547063.5

TRAFD1-203, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 3

Gene TRAFD1, Length 867 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-203ENST00000547063 SIPA1L3O60292 1781 aaPredicted RBP20.52■□□□□ 0.88
TRAFD1-203ENST00000547063 MARCH10Q8NA82 808 aaPredicted RBP20.52■□□□□ 0.88
TRAFD1-203ENST00000547063 MBIPQ9NS73 344 aa20.52■□□□□ 0.88
TRAFD1-203ENST00000547063 BTBD11A6QL63 1104 aa20.51■□□□□ 0.87
TRAFD1-203ENST00000547063 CT47B1P0C2W7 299 aaPredicted RBP20.51■□□□□ 0.87
TRAFD1-203ENST00000547063 NFATC2IPQ8NCF5 419 aa20.5■□□□□ 0.87
TRAFD1-203ENST00000547063 TSR2Q969E8 191 aaKnown RBP20.5■□□□□ 0.87
TRAFD1-203ENST00000547063 TMOD3Q9NYL9 352 aa20.49■□□□□ 0.87
TRAFD1-203ENST00000547063 RGS17Q9UGC6 210 aaPredicted RBP20.49■□□□□ 0.87
TRAFD1-203ENST00000547063 BCL9O00512 1426 aa20.48■□□□□ 0.87
TRAFD1-203ENST00000547063 TOGARAM1Q9Y4F4 1720 aa20.47■□□□□ 0.87
TRAFD1-203ENST00000547063 KDM3BQ7LBC6 1761 aa20.47■□□□□ 0.87
TRAFD1-203ENST00000547063 SOS1Q07889 1333 aaPredicted RBP20.47■□□□□ 0.87
TRAFD1-203ENST00000547063 EXOSC9Q06265 439 aaKnown RBP20.46■□□□□ 0.87
TRAFD1-203ENST00000547063 TTC5Q8N0Z6 440 aa20.46■□□□□ 0.87
TRAFD1-203ENST00000547063 ZNF428Q96B54 188 aa20.46■□□□□ 0.87
TRAFD1-203ENST00000547063 CHMP4AQ9BY43 222 aa20.46■□□□□ 0.87
TRAFD1-203ENST00000547063 DOT1LQ8TEK3 1739 aa20.46■□□□□ 0.87
TRAFD1-203ENST00000547063 KAT6BQ8WYB5 2073 aa20.46■□□□□ 0.87
TRAFD1-203ENST00000547063 KRT27Q7Z3Y8 459 aa20.45■□□□□ 0.86
TRAFD1-203ENST00000547063 MIS18AQ9NYP9 233 aa20.45■□□□□ 0.86
TRAFD1-203ENST00000547063 ITGB4P16144 1822 aa20.45■□□□□ 0.86
TRAFD1-203ENST00000547063 ZNF790Q6PG37 636 aa20.44■□□□□ 0.86
TRAFD1-203ENST00000547063 POTEAQ6S8J7 498 aa20.44■□□□□ 0.86
TRAFD1-203ENST00000547063 SYTL4Q96C24 671 aaPredicted RBP20.43■□□□□ 0.86
TRAFD1-203ENST00000547063 BRWD3Q6RI45 1802 aa20.42■□□□□ 0.86
TRAFD1-203ENST00000547063 HOXB7P09629 217 aa20.42■□□□□ 0.86
TRAFD1-203ENST00000547063 PRIM1P49642 420 aaKnown RBP20.42■□□□□ 0.86
TRAFD1-203ENST00000547063 FAM196AQ6ZSG2 479 aa20.42■□□□□ 0.86
TRAFD1-203ENST00000547063 RCAN3Q9UKA8 241 aa20.42■□□□□ 0.86
TRAFD1-203ENST00000547063 EIF4A1P60842 406 aaKnown RBP20.41■□□□□ 0.86
TRAFD1-203ENST00000547063 TWISTNBQ3B726 338 aaPredicted RBP20.41■□□□□ 0.86
TRAFD1-203ENST00000547063 PIGBQ92521 554 aa20.41■□□□□ 0.86
TRAFD1-203ENST00000547063 PAPPAQ13219 1627 aa20.4■□□□□ 0.86
TRAFD1-203ENST00000547063 FMNL2Q96PY5 1086 aa20.4■□□□□ 0.86
TRAFD1-203ENST00000547063 RGS12O14924 1447 aa20.39■□□□□ 0.85
TRAFD1-203ENST00000547063 SLC39A6Q13433 755 aa20.39■□□□□ 0.85
TRAFD1-203ENST00000547063 C8orf58Q8NAV2 365 aa20.39■□□□□ 0.85
TRAFD1-203ENST00000547063 ACSBG1Q96GR2 724 aa20.39■□□□□ 0.85
TRAFD1-203ENST00000547063 NHSQ6T4R5 1651 aa20.38■□□□□ 0.85
TRAFD1-203ENST00000547063 VAMP4O75379 141 aa20.38■□□□□ 0.85
TRAFD1-203ENST00000547063 SMARCC1Q92922 1105 aaPredicted RBP20.38■□□□□ 0.85
TRAFD1-203ENST00000547063 HEG1Q9ULI3 1381 aa20.37■□□□□ 0.85
TRAFD1-203ENST00000547063 UBR2Q8IWV8 1755 aa20.36■□□□□ 0.85
TRAFD1-203ENST00000547063 ELL2O00472 640 aaPredicted RBP20.36■□□□□ 0.85
TRAFD1-203ENST00000547063 KCNQ3O43525 872 aa20.36■□□□□ 0.85
TRAFD1-203ENST00000547063 ALDH1L2Q3SY69 923 aa20.36■□□□□ 0.85
TRAFD1-203ENST00000547063 TSPYL6Q8N831 410 aa20.36■□□□□ 0.85
TRAFD1-203ENST00000547063 SBF2Q86WG5 1849 aa20.35■□□□□ 0.85
TRAFD1-203ENST00000547063 SNRPA1P09661 255 aaKnown RBP20.35■□□□□ 0.85
TRAFD1-203ENST00000547063 ZNF496Q96IT1 587 aaPredicted RBP20.35■□□□□ 0.85
TRAFD1-203ENST00000547063 ATG3Q9NT62 314 aa20.35■□□□□ 0.85
TRAFD1-203ENST00000547063 GIGYF1O75420 1035 aaPredicted RBP20.34■□□□□ 0.85
TRAFD1-203ENST00000547063 RARSP54136 660 aaKnown RBP20.34■□□□□ 0.85
TRAFD1-203ENST00000547063 CCDC30Q5VVM6 783 aa20.34■□□□□ 0.85
TRAFD1-203ENST00000547063 VSIG10Q8N0Z9 540 aa20.34■□□□□ 0.85
TRAFD1-203ENST00000547063 ASAP1Q9ULH1 1129 aa20.34■□□□□ 0.85
TRAFD1-203ENST00000547063 KCPQ6ZWJ8 1503 aa20.33■□□□□ 0.85
TRAFD1-203ENST00000547063 KRT24Q2M2I5 525 aa20.33■□□□□ 0.85
TRAFD1-203ENST00000547063 FAM182BQ5T319 152 aa20.33■□□□□ 0.85
TRAFD1-203ENST00000547063 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.33■□□□□ 0.85
TRAFD1-203ENST00000547063 TEX13AQ9BXU3 409 aaPredicted RBP20.33■□□□□ 0.85
TRAFD1-203ENST00000547063 BCL11BQ9C0K0 894 aaPredicted RBP20.33■□□□□ 0.85
TRAFD1-203ENST00000547063 KCNQ2O43526 872 aa20.32■□□□□ 0.84
TRAFD1-203ENST00000547063 STK31Q9BXU1 1019 aa20.32■□□□□ 0.84
TRAFD1-203ENST00000547063 PTCD1O75127 700 aaKnown RBP20.31■□□□□ 0.84
TRAFD1-203ENST00000547063 HDGFL1Q5TGJ6 251 aa20.31■□□□□ 0.84
TRAFD1-203ENST00000547063 SMC4Q9NTJ3 1288 aa20.31■□□□□ 0.84
TRAFD1-203ENST00000547063 CACNA1FO60840 1977 aa20.3■□□□□ 0.84
TRAFD1-203ENST00000547063 BTAF1O14981 1849 aa20.3■□□□□ 0.84
TRAFD1-203ENST00000547063 BRPF1P55201 1214 aaPredicted RBP20.3■□□□□ 0.84
TRAFD1-203ENST00000547063 RBM42Q9BTD8 480 aaKnown RBP20.3■□□□□ 0.84
TRAFD1-203ENST00000547063 PALLDQ8WX93 1383 aa20.3■□□□□ 0.84
TRAFD1-203ENST00000547063 KIF16BQ96L93 1317 aa20.29■□□□□ 0.84
TRAFD1-203ENST00000547063 SSH1Q8WYL5 1049 aa20.29■□□□□ 0.84
TRAFD1-203ENST00000547063 SUPT16HQ9Y5B9 1047 aaKnown RBP20.29■□□□□ 0.84
TRAFD1-203ENST00000547063 LAMB4A4D0S4 1761 aa20.29■□□□□ 0.84
TRAFD1-203ENST00000547063 HMGB2P26583 209 aaKnown RBP20.28■□□□□ 0.84
TRAFD1-203ENST00000547063 ZNF831Q5JPB2 1677 aa20.27■□□□□ 0.84
TRAFD1-203ENST00000547063 IPO8O15397 1037 aaKnown RBP20.27■□□□□ 0.84
TRAFD1-203ENST00000547063 EIF2S2P20042 333 aaKnown RBP20.27■□□□□ 0.84
TRAFD1-203ENST00000547063 ERBB4Q15303 1308 aa20.27■□□□□ 0.83
TRAFD1-203ENST00000547063 RNF123Q5XPI4 1314 aa20.27■□□□□ 0.83
TRAFD1-203ENST00000547063 C5P01031 1676 aa20.26■□□□□ 0.83
TRAFD1-203ENST00000547063 BCAR3O75815 825 aa20.26■□□□□ 0.83
TRAFD1-203ENST00000547063 STARD3NLO95772 234 aa20.26■□□□□ 0.83
TRAFD1-203ENST00000547063 DBF4Q9UBU7 674 aaPredicted RBP20.26■□□□□ 0.83
TRAFD1-203ENST00000547063 CICQ96RK0 1608 aaPredicted RBP20.25■□□□□ 0.83
TRAFD1-203ENST00000547063 LOC102724428A0A0B4J2F2 783 aa20.25■□□□□ 0.83
TRAFD1-203ENST00000547063 TRIM37O94972 964 aa20.25■□□□□ 0.83
TRAFD1-203ENST00000547063 CANXP27824 592 aaKnown RBP20.25■□□□□ 0.83
TRAFD1-203ENST00000547063 RRP1P56182 461 aaKnown RBP20.25■□□□□ 0.83
TRAFD1-203ENST00000547063 SIK1P57059 783 aa20.25■□□□□ 0.83
TRAFD1-203ENST00000547063 BCL2L13Q9BXK5 485 aa20.25■□□□□ 0.83
TRAFD1-203ENST00000547063 SLC4A2P04920 1241 aa20.24■□□□□ 0.83
TRAFD1-203ENST00000547063 MS4A1P11836 297 aa20.24■□□□□ 0.83
TRAFD1-203ENST00000547063 MRPL50Q8N5N7 158 aaKnown RBP20.24■□□□□ 0.83
TRAFD1-203ENST00000547063 ATP6V1AP38606 617 aa20.23■□□□□ 0.83
TRAFD1-203ENST00000547063 ARHGAP45Q92619 1136 aa20.23■□□□□ 0.83
TRAFD1-203ENST00000547063 USP16Q9Y5T5 823 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms