RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 RNMTO43148 476 aaKnown RBP20.98■□□□□ 0.95
CCDC78-216ENST00000544996 SLC16A10Q8TF71 515 aa20.98■□□□□ 0.95
CCDC78-216ENST00000544996 RBM42Q9BTD8 480 aaKnown RBP20.98■□□□□ 0.95
CCDC78-216ENST00000544996 SLC52A2Q9HAB3 445 aa20.98■□□□□ 0.95
CCDC78-216ENST00000544996 LGR6Q9HBX8 967 aa20.98■□□□□ 0.95
CCDC78-216ENST00000544996 PNPLA7Q6ZV29 1317 aa20.98■□□□□ 0.95
CCDC78-216ENST00000544996 AK7Q96M32 723 aa20.97■□□□□ 0.95
CCDC78-216ENST00000544996 GNAT3A8MTJ3 354 aa20.96■□□□□ 0.95
CCDC78-216ENST00000544996 MSH5O43196 834 aa20.96■□□□□ 0.95
CCDC78-216ENST00000544996 FLAD1Q8NFF5 587 aa20.96■□□□□ 0.95
CCDC78-216ENST00000544996 NEFMP07197 916 aa20.95■□□□□ 0.94
CCDC78-216ENST00000544996 PHACTR3Q96KR7 559 aa20.95■□□□□ 0.94
CCDC78-216ENST00000544996 MAP3K5Q99683 1374 aa20.95■□□□□ 0.94
CCDC78-216ENST00000544996 ITPK1Q13572 414 aa20.94■□□□□ 0.94
CCDC78-216ENST00000544996 LINC00116Q8NCU8 138 aa20.94■□□□□ 0.94
CCDC78-216ENST00000544996 C5P01031 1676 aa20.93■□□□□ 0.94
CCDC78-216ENST00000544996 PTCD1O75127 700 aaKnown RBP20.93■□□□□ 0.94
CCDC78-216ENST00000544996 PTGER2P43116 358 aa20.93■□□□□ 0.94
CCDC78-216ENST00000544996 MYBBP1AQ9BQG0 1328 aaKnown RBP20.93■□□□□ 0.94
CCDC78-216ENST00000544996 COL23A1Q86Y22 540 aaPredicted RBP20.92■□□□□ 0.94
CCDC78-216ENST00000544996 PNNQ9H307 717 aaKnown RBP20.92■□□□□ 0.94
CCDC78-216ENST00000544996 TEFQ10587 303 aa20.91■□□□□ 0.94
CCDC78-216ENST00000544996 SCN11AQ9UI33 1791 aa20.9■□□□□ 0.94
CCDC78-216ENST00000544996 POLD1P28340 1107 aa20.9■□□□□ 0.94
CCDC78-216ENST00000544996 IL17REQ8NFR9 667 aa20.9■□□□□ 0.94
CCDC78-216ENST00000544996 SLC4A9Q96Q91 983 aa20.9■□□□□ 0.94
CCDC78-216ENST00000544996 C4BP0C0L5 1744 aa20.9■□□□□ 0.94
CCDC78-216ENST00000544996 MRC1P22897 1456 aa20.89■□□□□ 0.94
CCDC78-216ENST00000544996 ZNF316A6NFI3 1004 aaPredicted RBP20.89■□□□□ 0.93
CCDC78-216ENST00000544996 GNPATO15228 680 aa20.89■□□□□ 0.93
CCDC78-216ENST00000544996 SSFA2P28290 1259 aa20.89■□□□□ 0.93
CCDC78-216ENST00000544996 RTF1Q92541 710 aaKnown RBP20.89■□□□□ 0.93
CCDC78-216ENST00000544996 QSER1Q2KHR3 1735 aa20.89■□□□□ 0.93
CCDC78-216ENST00000544996 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.88■□□□□ 0.93
CCDC78-216ENST00000544996 PHF14O94880 888 aa20.88■□□□□ 0.93
CCDC78-216ENST00000544996 SGIP1Q9BQI5 828 aa20.88■□□□□ 0.93
CCDC78-216ENST00000544996 SLC39A6Q13433 755 aa20.87■□□□□ 0.93
CCDC78-216ENST00000544996 RC3H1Q5TC82 1133 aaKnown RBP20.87■□□□□ 0.93
CCDC78-216ENST00000544996 TTC5Q8N0Z6 440 aa20.87■□□□□ 0.93
CCDC78-216ENST00000544996 ARXQ96QS3 562 aa20.87■□□□□ 0.93
CCDC78-216ENST00000544996 PRKRIP1Q9H875 184 aaPredicted RBP20.87■□□□□ 0.93
CCDC78-216ENST00000544996 TAF1LQ8IZX4 1826 aa20.87■□□□□ 0.93
CCDC78-216ENST00000544996 RTCBQ9Y3I0 505 aaKnown RBP20.86■□□□□ 0.93
CCDC78-216ENST00000544996 CNTNAP4Q9C0A0 1308 aa20.85■□□□□ 0.93
CCDC78-216ENST00000544996 MAPK8IP3Q9UPT6 1336 aa20.85■□□□□ 0.93
CCDC78-216ENST00000544996 HTATSF1O43719 755 aaKnown RBP20.85■□□□□ 0.93
CCDC78-216ENST00000544996 ADAMTS7Q9UKP4 1686 aa20.85■□□□□ 0.93
CCDC78-216ENST00000544996 CEMIPQ8WUJ3 1361 aa20.85■□□□□ 0.93
CCDC78-216ENST00000544996 TRAPPC3LQ5T215 181 aa20.84■□□□□ 0.93
CCDC78-216ENST00000544996 AMIGO3Q86WK7 504 aa20.84■□□□□ 0.93
CCDC78-216ENST00000544996 ZNF831Q5JPB2 1677 aa20.83■□□□□ 0.93
CCDC78-216ENST00000544996 PLEKHF1Q96S99 279 aa20.83■□□□□ 0.93
CCDC78-216ENST00000544996 TUBGCP6Q96RT7 1819 aa20.83■□□□□ 0.92
CCDC78-216ENST00000544996 RPS6KA4O75676 772 aa20.82■□□□□ 0.92
CCDC78-216ENST00000544996 ADRA2BP18089 450 aa20.82■□□□□ 0.92
CCDC78-216ENST00000544996 MSL1Q68DK7 614 aa20.82■□□□□ 0.92
CCDC78-216ENST00000544996 ZNF790Q6PG37 636 aa20.82■□□□□ 0.92
CCDC78-216ENST00000544996 SMIM5Q71RC9 77 aa20.82■□□□□ 0.92
CCDC78-216ENST00000544996 MCM10Q7L590 875 aa20.82■□□□□ 0.92
CCDC78-216ENST00000544996 VSIG10Q8N0Z9 540 aa20.82■□□□□ 0.92
CCDC78-216ENST00000544996 FHDC1Q9C0D6 1143 aaPredicted RBP20.82■□□□□ 0.92
CCDC78-216ENST00000544996 DCAF8L1A6NGE4 600 aa20.81■□□□□ 0.92
CCDC78-216ENST00000544996 BTBD11A6QL63 1104 aa20.81■□□□□ 0.92
CCDC78-216ENST00000544996 CRKLP46109 303 aaKnown RBP20.81■□□□□ 0.92
CCDC78-216ENST00000544996 WDR43Q15061 677 aaKnown RBP eCLIP20.81■□□□□ 0.92
CCDC78-216ENST00000544996 DNAJC10Q8IXB1 793 aa20.81■□□□□ 0.92
CCDC78-216ENST00000544996 NFE2L2Q16236 605 aa20.8■□□□□ 0.92
CCDC78-216ENST00000544996 SYT17Q9BSW7 474 aa20.8■□□□□ 0.92
CCDC78-216ENST00000544996 RFC4P35249 363 aa20.79■□□□□ 0.92
CCDC78-216ENST00000544996 DCTN1Q14203 1278 aa20.78■□□□□ 0.92
CCDC78-216ENST00000544996 KLHL34Q8N239 644 aa20.78■□□□□ 0.92
CCDC78-216ENST00000544996 ZNF496Q96IT1 587 aaPredicted RBP20.78■□□□□ 0.92
CCDC78-216ENST00000544996 CCDC87Q9NVE4 849 aa20.78■□□□□ 0.92
CCDC78-216ENST00000544996 KCPQ6ZWJ8 1503 aa20.78■□□□□ 0.92
CCDC78-216ENST00000544996 UBR3Q6ZT12 1888 aa20.77■□□□□ 0.92
CCDC78-216ENST00000544996 STARD3NLO95772 234 aa20.77■□□□□ 0.92
CCDC78-216ENST00000544996 CYP19A1P11511 503 aaPredicted RBP20.77■□□□□ 0.92
CCDC78-216ENST00000544996 ARHGEF1Q92888 912 aaKnown RBP20.77■□□□□ 0.92
CCDC78-216ENST00000544996 FMNL2Q96PY5 1086 aa20.77■□□□□ 0.92
CCDC78-216ENST00000544996 TEX13AQ9BXU3 409 aaPredicted RBP20.77■□□□□ 0.92
CCDC78-216ENST00000544996 COL5A3P25940 1745 aaPredicted RBP20.76■□□□□ 0.91
CCDC78-216ENST00000544996 TAF7Q15545 349 aaPredicted RBP20.76■□□□□ 0.91
CCDC78-216ENST00000544996 INTS5Q6P9B9 1019 aaKnown RBP20.76■□□□□ 0.91
CCDC78-216ENST00000544996 HEG1Q9ULI3 1381 aa20.75■□□□□ 0.91
CCDC78-216ENST00000544996 NLGN1Q8N2Q7 840 aa20.75■□□□□ 0.91
CCDC78-216ENST00000544996 VIRMAQ69YN4 1812 aaKnown RBP20.75■□□□□ 0.91
CCDC78-216ENST00000544996 CICQ96RK0 1608 aaPredicted RBP20.75■□□□□ 0.91
CCDC78-216ENST00000544996 TJP1Q07157 1748 aa20.73■□□□□ 0.91
CCDC78-216ENST00000544996 RIPK4P57078 832 aa20.73■□□□□ 0.91
CCDC78-216ENST00000544996 COL24A1Q17RW2 1714 aa20.73■□□□□ 0.91
CCDC78-216ENST00000544996 ANP32CO43423 234 aa20.72■□□□□ 0.91
CCDC78-216ENST00000544996 KCNQ3O43525 872 aa20.72■□□□□ 0.91
CCDC78-216ENST00000544996 LMOD3Q0VAK6 560 aa20.72■□□□□ 0.91
CCDC78-216ENST00000544996 CCDC146Q8IYE0 955 aa20.72■□□□□ 0.91
CCDC78-216ENST00000544996 PNISRQ8TF01 805 aaKnown RBP20.72■□□□□ 0.91
CCDC78-216ENST00000544996 RUNDC1Q96C34 613 aa20.72■□□□□ 0.91
CCDC78-216ENST00000544996 ADAMTS8Q9UP79 889 aa20.72■□□□□ 0.91
CCDC78-216ENST00000544996 SOS1Q07889 1333 aaPredicted RBP20.71■□□□□ 0.91
CCDC78-216ENST00000544996 SIPA1L3O60292 1781 aaPredicted RBP20.7■□□□□ 0.9
CCDC78-216ENST00000544996 ZPR1O75312 459 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms