RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 TATP17735 454 aaPredicted RBP6.96□□□□□ -1.3
VPS50-220ENST00000544910 SETQ01105 290 aaPredicted RBP6.96□□□□□ -1.3
VPS50-220ENST00000544910 LRRFIP2Q9Y608 721 aaKnown RBP6.96□□□□□ -1.3
VPS50-220ENST00000544910 SPG7Q9UQ90 795 aa6.96□□□□□ -1.3
VPS50-220ENST00000544910 ARHGEF10O15013 1369 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 VPS37CA5D8V6 355 aaPredicted RBP6.95□□□□□ -1.3
VPS50-220ENST00000544910 SSFA2P28290 1259 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 IL1RAPL2Q9NP60 686 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 PHF8Q9UPP1 1060 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 WDR33Q9C0J8 1336 aaKnown RBP6.95□□□□□ -1.3
VPS50-220ENST00000544910 NCKAP5LQ9HCH0 1330 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 IQSEC2Q5JU85 1478 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 MYOM1P52179 1685 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 USP32Q8NFA0 1604 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 AATKQ6ZMQ8 1374 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 MTHFSDQ2M296 383 aaKnown RBP6.95□□□□□ -1.3
VPS50-220ENST00000544910 AMOTQ4VCS5 1084 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 PROSER2Q86WR7 435 aaPredicted RBP6.95□□□□□ -1.3
VPS50-220ENST00000544910 SIRT1Q96EB6 747 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 KIF1BPQ96EK5 621 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 MED14O60244 1454 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 EVA1CP58658 441 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 CEP85Q6P2H3 762 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 MEIS3Q99687 375 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 DCTPP1Q9H773 170 aa6.95□□□□□ -1.3
VPS50-220ENST00000544910 AACSQ86V21 672 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 CDK12Q9NYV4 1490 aaPredicted RBP6.94□□□□□ -1.3
VPS50-220ENST00000544910 SBNO1A3KN83 1393 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 PIK3C2BO00750 1634 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 ZNF771Q7L3S4 317 aaPredicted RBP6.94□□□□□ -1.3
VPS50-220ENST00000544910 CYP46A1Q9Y6A2 500 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 MAP3K5Q99683 1374 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 SDSP20132 328 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 ANO8Q9HCE9 1232 aaPredicted RBP6.94□□□□□ -1.3
VPS50-220ENST00000544910 ABCC4O15439 1325 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 RBM25P49756 843 aaKnown RBP6.94□□□□□ -1.3
VPS50-220ENST00000544910 CWC27Q6UX04 472 aaKnown RBP6.94□□□□□ -1.3
VPS50-220ENST00000544910 DNAAF4Q8WXU2 420 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 PODXL2Q9NZ53 605 aa6.94□□□□□ -1.3
VPS50-220ENST00000544910 TMEM2Q9UHN6 1383 aa6.93□□□□□ -1.3
VPS50-220ENST00000544910 PLEKHM2Q8IWE5 1019 aa6.93□□□□□ -1.3
VPS50-220ENST00000544910 PDRG1Q9NUG6 133 aa6.93□□□□□ -1.3
VPS50-220ENST00000544910 DNAJC2Q99543 621 aaKnown RBP6.93□□□□□ -1.3
VPS50-220ENST00000544910 CLTCQ00610 1675 aaKnown RBP6.93□□□□□ -1.3
VPS50-220ENST00000544910 NPHP1O15259 732 aa6.93□□□□□ -1.3
VPS50-220ENST00000544910 ZSCAN31Q96LW9 406 aaPredicted RBP6.93□□□□□ -1.3
VPS50-220ENST00000544910 MYL6BP14649 208 aa6.93□□□□□ -1.3
VPS50-220ENST00000544910 ANKRD1Q15327 319 aa6.93□□□□□ -1.3
VPS50-220ENST00000544910 SOS1Q07889 1333 aaPredicted RBP6.92□□□□□ -1.3
VPS50-220ENST00000544910 XPCQ01831 940 aaPredicted RBP6.92□□□□□ -1.3
VPS50-220ENST00000544910 C16orf71Q8IYS4 520 aaPredicted RBP6.92□□□□□ -1.3
VPS50-220ENST00000544910 SIL1Q9H173 461 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 KIAA0232Q92628 1395 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 CABP4P57796 275 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 NEUROD6Q96NK8 337 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 METP08581 1390 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 PREX1Q8TCU6 1659 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 BRPF1P55201 1214 aaPredicted RBP6.92□□□□□ -1.3
VPS50-220ENST00000544910 RAB3GAP1Q15042 981 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 MROH1Q8NDA8 1641 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 RRP9O43818 475 aaKnown RBP6.92□□□□□ -1.3
VPS50-220ENST00000544910 GLRX3O76003 335 aaKnown RBP6.92□□□□□ -1.3
VPS50-220ENST00000544910 PDE1AP54750 535 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 ATP8B2P98198 1209 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 KRT24Q2M2I5 525 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 BICD2Q8TD16 824 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 FOXO3O43524 673 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 HOXC9P31274 260 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 SF3A1Q15459 793 aaKnown RBP6.92□□□□□ -1.3
VPS50-220ENST00000544910 MPRIPQ6WCQ1 1025 aa6.92□□□□□ -1.3
VPS50-220ENST00000544910 JAKMIP1Q96N16 626 aaKnown RBP6.92□□□□□ -1.3
VPS50-220ENST00000544910 GOLGA6L19H0YKK7 550 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 BAG4O95429 457 aaKnown RBP6.91□□□□□ -1.3
VPS50-220ENST00000544910 CASTP20810 708 aaKnown RBP6.91□□□□□ -1.3
VPS50-220ENST00000544910 RNF214Q8ND24 703 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 HYPKQ9NX55 129 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 ADGRB1O14514 1584 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 KIF20BQ96Q89 1820 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 A2ML1A8K2U0 1454 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 GPS2Q13227 327 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 TEX35Q5T0J7 233 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 FAM13BQ9NYF5 915 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 DBF4Q9UBU7 674 aaPredicted RBP6.91□□□□□ -1.3
VPS50-220ENST00000544910 PLEKHG1Q9ULL1 1385 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 LRRC7Q96NW7 1537 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 DLC1Q96QB1 1528 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 PTPRMP28827 1452 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 MAP3K19Q56UN5 1328 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 ARHGEF28Q8N1W1 1705 aaKnown RBP6.91□□□□□ -1.3
VPS50-220ENST00000544910 CHL1O00533 1208 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 EYA1Q99502 592 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 MAP3K2Q9Y2U5 619 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 PDCP20941 246 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 TSHZ3Q63HK5 1081 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 SASS6Q6UVJ0 657 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 ESYT1Q9BSJ8 1104 aa6.91□□□□□ -1.3
VPS50-220ENST00000544910 A0A0U1RQG5 324 aaPredicted RBP6.9□□□□□ -1.3
VPS50-220ENST00000544910 PPP1R42Q7Z4L9 355 aa6.9□□□□□ -1.3
VPS50-220ENST00000544910 KIF6Q6ZMV9 814 aa6.9□□□□□ -1.3
VPS50-220ENST00000544910 PTCH1Q13635 1447 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms