RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 RNMTO43148 476 aaKnown RBP15.32■□□□□ 0.04
YBX3-216ENST00000544622 ZBTB7AO95365 584 aa15.32■□□□□ 0.04
YBX3-216ENST00000544622 SLC52A2Q9HAB3 445 aa15.32■□□□□ 0.04
YBX3-216ENST00000544622 TFCP2L1Q9NZI6 479 aa15.32■□□□□ 0.04
YBX3-216ENST00000544622 ITPK1Q13572 414 aa15.31■□□□□ 0.04
YBX3-216ENST00000544622 SLC16A10Q8TF71 515 aa15.31■□□□□ 0.04
YBX3-216ENST00000544622 C5P01031 1676 aa15.31■□□□□ 0.04
YBX3-216ENST00000544622 SCN11AQ9UI33 1791 aa15.31■□□□□ 0.04
YBX3-216ENST00000544622 TAF1LQ8IZX4 1826 aa15.31■□□□□ 0.04
YBX3-216ENST00000544622 U2AF1L5P0DN76 240 aaPredicted RBP15.3■□□□□ 0.04
YBX3-216ENST00000544622 MRC1P22897 1456 aa15.3■□□□□ 0.04
YBX3-216ENST00000544622 PRKAR2BP31323 418 aa15.3■□□□□ 0.04
YBX3-216ENST00000544622 U2AF1Q01081 240 aaKnown RBP eCLIP15.3■□□□□ 0.04
YBX3-216ENST00000544622 ZNF831Q5JPB2 1677 aa15.3■□□□□ 0.04
YBX3-216ENST00000544622 AMIGO3Q86WK7 504 aa15.3■□□□□ 0.04
YBX3-216ENST00000544622 LINC00116Q8NCU8 138 aa15.3■□□□□ 0.04
YBX3-216ENST00000544622 IL17REQ8NFR9 667 aa15.3■□□□□ 0.04
YBX3-216ENST00000544622 GAS2L2Q8NHY3 880 aa15.3■□□□□ 0.04
YBX3-216ENST00000544622 ATF5Q9Y2D1 282 aaPredicted RBP15.3■□□□□ 0.04
YBX3-216ENST00000544622 ATP6V1AP38606 617 aa15.29■□□□□ 0.04
YBX3-216ENST00000544622 COL23A1Q86Y22 540 aaPredicted RBP15.29■□□□□ 0.04
YBX3-216ENST00000544622 TUBGCP6Q96RT7 1819 aa15.28■□□□□ 0.04
YBX3-216ENST00000544622 C4BP0C0L5 1744 aa15.28■□□□□ 0.04
YBX3-216ENST00000544622 CEMIPQ8WUJ3 1361 aa15.27■□□□□ 0.04
YBX3-216ENST00000544622 MAP3K5Q99683 1374 aa15.27■□□□□ 0.04
YBX3-216ENST00000544622 COL24A1Q17RW2 1714 aa15.27■□□□□ 0.04
YBX3-216ENST00000544622 GNAT3A8MTJ3 354 aa15.27■□□□□ 0.04
YBX3-216ENST00000544622 PLEKHF1Q96S99 279 aa15.27■□□□□ 0.04
YBX3-216ENST00000544622 FLAD1Q8NFF5 587 aa15.26■□□□□ 0.03
YBX3-216ENST00000544622 GOLGB1Q14789 3259 aaKnown RBP15.25■□□□□ 0.03
YBX3-216ENST00000544622 MYBBP1AQ9BQG0 1328 aaKnown RBP15.25■□□□□ 0.03
YBX3-216ENST00000544622 RC3H1Q5TC82 1133 aaKnown RBP15.25■□□□□ 0.03
YBX3-216ENST00000544622 RBM42Q9BTD8 480 aaKnown RBP15.25■□□□□ 0.03
YBX3-216ENST00000544622 PRKRIP1Q9H875 184 aaPredicted RBP15.25■□□□□ 0.03
YBX3-216ENST00000544622 PTCD1O75127 700 aaKnown RBP15.24■□□□□ 0.03
YBX3-216ENST00000544622 SSFA2P28290 1259 aa15.24■□□□□ 0.03
YBX3-216ENST00000544622 AK7Q96M32 723 aa15.24■□□□□ 0.03
YBX3-216ENST00000544622 CICQ96RK0 1608 aaPredicted RBP15.24■□□□□ 0.03
YBX3-216ENST00000544622 CNTNAP4Q9C0A0 1308 aa15.23■□□□□ 0.03
YBX3-216ENST00000544622 UBR3Q6ZT12 1888 aa15.23■□□□□ 0.03
YBX3-216ENST00000544622 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.23■□□□□ 0.03
YBX3-216ENST00000544622 HTATSF1O43719 755 aaKnown RBP15.23■□□□□ 0.03
YBX3-216ENST00000544622 SLC39A6Q13433 755 aa15.23■□□□□ 0.03
YBX3-216ENST00000544622 SMIM5Q71RC9 77 aa15.23■□□□□ 0.03
YBX3-216ENST00000544622 VIRMAQ69YN4 1812 aaKnown RBP15.22■□□□□ 0.03
YBX3-216ENST00000544622 ZNF316A6NFI3 1004 aaPredicted RBP15.22■□□□□ 0.03
YBX3-216ENST00000544622 VSIG10Q8N0Z9 540 aa15.22■□□□□ 0.03
YBX3-216ENST00000544622 ARXQ96QS3 562 aa15.22■□□□□ 0.03
YBX3-216ENST00000544622 PPP1R1BQ9UD71 204 aaPredicted RBP15.22■□□□□ 0.03
YBX3-216ENST00000544622 COL5A3P25940 1745 aaPredicted RBP15.22■□□□□ 0.03
YBX3-216ENST00000544622 KCPQ6ZWJ8 1503 aa15.22■□□□□ 0.03
YBX3-216ENST00000544622 GNPATO15228 680 aa15.2■□□□□ 0.02
YBX3-216ENST00000544622 RPS6KA4O75676 772 aa15.2■□□□□ 0.02
YBX3-216ENST00000544622 TEFQ10587 303 aa15.2■□□□□ 0.02
YBX3-216ENST00000544622 ZNF790Q6PG37 636 aa15.2■□□□□ 0.02
YBX3-216ENST00000544622 SYT17Q9BSW7 474 aa15.2■□□□□ 0.02
YBX3-216ENST00000544622 SIPA1L3O60292 1781 aaPredicted RBP15.2■□□□□ 0.02
YBX3-216ENST00000544622 PHF14O94880 888 aa15.19■□□□□ 0.02
YBX3-216ENST00000544622 ADRA2BP18089 450 aa15.19■□□□□ 0.02
YBX3-216ENST00000544622 INTS5Q6P9B9 1019 aaKnown RBP15.19■□□□□ 0.02
YBX3-216ENST00000544622 MCM10Q7L590 875 aa15.19■□□□□ 0.02
YBX3-216ENST00000544622 FHDC1Q9C0D6 1143 aaPredicted RBP15.19■□□□□ 0.02
YBX3-216ENST00000544622 PNNQ9H307 717 aaKnown RBP15.19■□□□□ 0.02
YBX3-216ENST00000544622 RTCBQ9Y3I0 505 aaKnown RBP15.19■□□□□ 0.02
YBX3-216ENST00000544622 TJP1Q07157 1748 aa15.19■□□□□ 0.02
YBX3-216ENST00000544622 MYH14Q7Z406 1995 aaKnown RBP15.18■□□□□ 0.02
YBX3-216ENST00000544622 MSH5O43196 834 aa15.18■□□□□ 0.02
YBX3-216ENST00000544622 CYP19A1P11511 503 aaPredicted RBP15.18■□□□□ 0.02
YBX3-216ENST00000544622 POLD1P28340 1107 aa15.18■□□□□ 0.02
YBX3-216ENST00000544622 CRKLP46109 303 aaKnown RBP15.18■□□□□ 0.02
YBX3-216ENST00000544622 TRAPPC3LQ5T215 181 aa15.18■□□□□ 0.02
YBX3-216ENST00000544622 DNAJC10Q8IXB1 793 aa15.18■□□□□ 0.02
YBX3-216ENST00000544622 ARHGEF1Q92888 912 aaKnown RBP15.18■□□□□ 0.02
YBX3-216ENST00000544622 UBR2Q8IWV8 1755 aa15.18■□□□□ 0.02
YBX3-216ENST00000544622 DCTN1Q14203 1278 aa15.17■□□□□ 0.02
YBX3-216ENST00000544622 RTF1Q92541 710 aaKnown RBP15.17■□□□□ 0.02
YBX3-216ENST00000544622 ZNF496Q96IT1 587 aaPredicted RBP15.17■□□□□ 0.02
YBX3-216ENST00000544622 BTBD11A6QL63 1104 aa15.16■□□□□ 0.02
YBX3-216ENST00000544622 NFE2L2Q16236 605 aa15.16■□□□□ 0.02
YBX3-216ENST00000544622 KCNQ3O43525 872 aa15.15■□□□□ 0.02
YBX3-216ENST00000544622 MSL1Q68DK7 614 aa15.15■□□□□ 0.02
YBX3-216ENST00000544622 TTC5Q8N0Z6 440 aa15.15■□□□□ 0.02
YBX3-216ENST00000544622 HEG1Q9ULI3 1381 aa15.14■□□□□ 0.01
YBX3-216ENST00000544622 NEFMP07197 916 aa15.14■□□□□ 0.01
YBX3-216ENST00000544622 CCDC87Q9NVE4 849 aa15.14■□□□□ 0.01
YBX3-216ENST00000544622 ADAMTS8Q9UP79 889 aa15.14■□□□□ 0.01
YBX3-216ENST00000544622 GYS1P13807 737 aa15.13■□□□□ 0.01
YBX3-216ENST00000544622 TAF7Q15545 349 aaPredicted RBP15.13■□□□□ 0.01
YBX3-216ENST00000544622 FMNL2Q96PY5 1086 aa15.13■□□□□ 0.01
YBX3-216ENST00000544622 SOS1Q07889 1333 aaPredicted RBP15.13■□□□□ 0.01
YBX3-216ENST00000544622 RFC4P35249 363 aa15.12■□□□□ 0.01
YBX3-216ENST00000544622 NLGN1Q8N2Q7 840 aa15.12■□□□□ 0.01
YBX3-216ENST00000544622 TEX13AQ9BXU3 409 aaPredicted RBP15.12■□□□□ 0.01
YBX3-216ENST00000544622 ZBTB1Q9Y2K1 713 aa15.12■□□□□ 0.01
YBX3-216ENST00000544622 MAPK8IP3Q9UPT6 1336 aa15.12■□□□□ 0.01
YBX3-216ENST00000544622 DLG5Q8TDM6 1919 aa15.11■□□□□ 0.01
YBX3-216ENST00000544622 STARD3NLO95772 234 aa15.11■□□□□ 0.01
YBX3-216ENST00000544622 TMPOP42166 694 aaKnown RBP15.11■□□□□ 0.01
YBX3-216ENST00000544622 EIF5P55010 431 aaKnown RBP15.11■□□□□ 0.01
YBX3-216ENST00000544622 USP42Q9H9J4 1324 aaKnown RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms