RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TSPYL6Q8N831 410 aa16.86■□□□□ 0.29
LIMS1-215ENST00000544547 CYP46A1Q9Y6A2 500 aa16.86■□□□□ 0.29
LIMS1-215ENST00000544547 NCBP3Q53F19 620 aaKnown RBP16.85■□□□□ 0.29
LIMS1-215ENST00000544547 RASSF8Q8NHQ8 419 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 USP26Q9BXU7 913 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 STX6O43752 255 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 MX1P20591 662 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 PDCP20941 246 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 CEP135Q66GS9 1140 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 TMCO3Q6UWJ1 677 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 OTUD7AQ8TE49 926 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-215ENST00000544547 PLA2R1Q13018 1463 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 GADD45BO75293 160 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-215ENST00000544547 UBE2HP62256 183 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 LEKR1Q6ZMV7 388 aa16.85■□□□□ 0.29
LIMS1-215ENST00000544547 SLC52A1Q9NWF4 448 aa16.84■□□□□ 0.29
LIMS1-215ENST00000544547 F6X3S4 739 aa16.84■□□□□ 0.29
LIMS1-215ENST00000544547 RNF20Q5VTR2 975 aa16.84■□□□□ 0.29
LIMS1-215ENST00000544547 OGFRQ9NZT2 677 aa16.84■□□□□ 0.29
LIMS1-215ENST00000544547 ABCC10Q5T3U5 1492 aa16.84■□□□□ 0.29
LIMS1-215ENST00000544547 ATAD2Q6PL18 1390 aa16.84■□□□□ 0.29
LIMS1-215ENST00000544547 PDRG1Q9NUG6 133 aa16.84■□□□□ 0.29
LIMS1-215ENST00000544547 C9orf78Q9NZ63 289 aaPredicted RBP16.84■□□□□ 0.29
LIMS1-215ENST00000544547 NAT10Q9H0A0 1025 aaKnown RBP16.83■□□□□ 0.29
LIMS1-215ENST00000544547 KDM4AO75164 1064 aa16.83■□□□□ 0.28
LIMS1-215ENST00000544547 ZNF165P49910 485 aa16.83■□□□□ 0.28
LIMS1-215ENST00000544547 PLEKHM2Q8IWE5 1019 aa16.83■□□□□ 0.28
LIMS1-215ENST00000544547 MBIPQ9NS73 344 aa16.83■□□□□ 0.28
LIMS1-215ENST00000544547 OSCARQ8IYS5 282 aa16.83■□□□□ 0.28
LIMS1-215ENST00000544547 FANCAO15360 1455 aa16.83■□□□□ 0.28
LIMS1-215ENST00000544547 NEXNQ0ZGT2 675 aa16.82■□□□□ 0.28
LIMS1-215ENST00000544547 AK7Q96M32 723 aa16.82■□□□□ 0.28
LIMS1-215ENST00000544547 PES1O00541 588 aaKnown RBP16.82■□□□□ 0.28
LIMS1-215ENST00000544547 TRIM34Q9BYJ4 488 aa16.82■□□□□ 0.28
LIMS1-215ENST00000544547 GNAI3P08754 354 aa16.82■□□□□ 0.28
LIMS1-215ENST00000544547 EIF2AK4Q9P2K8 1649 aaKnown RBP16.81■□□□□ 0.28
LIMS1-215ENST00000544547 URI1O94763 535 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-215ENST00000544547 PHACTR3Q96KR7 559 aa16.81■□□□□ 0.28
LIMS1-215ENST00000544547 FEZ1Q99689 392 aa16.81■□□□□ 0.28
LIMS1-215ENST00000544547 DDX11Q96FC9 970 aa16.81■□□□□ 0.28
LIMS1-215ENST00000544547 WDR7Q9Y4E6 1490 aa16.81■□□□□ 0.28
LIMS1-215ENST00000544547 INSRP06213 1382 aa16.81■□□□□ 0.28
LIMS1-215ENST00000544547 ADGBQ8N7X0 1667 aa16.81■□□□□ 0.28
LIMS1-215ENST00000544547 DNM1Q05193 864 aaKnown RBP16.81■□□□□ 0.28
LIMS1-215ENST00000544547 CEP170Q5SW79 1584 aa16.81■□□□□ 0.28
LIMS1-215ENST00000544547 ME1P48163 572 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 TMX1Q9H3N1 280 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 SPG7Q9UQ90 795 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 ABCC11Q96J66 1382 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 NPC1L1Q9UHC9 1359 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 G3V3G9 751 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 SETQ01105 290 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-215ENST00000544547 DCAF8Q5TAQ9 597 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 ZRANB1Q9UGI0 708 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 LUZP1Q86V48 1076 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 C8orf58Q8NAV2 365 aa16.8■□□□□ 0.28
LIMS1-215ENST00000544547 RTEL1-TNFRSF6BF6WH68 1400 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 GJB2P29033 226 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 NOC3LQ8WTT2 800 aaKnown RBP16.79■□□□□ 0.28
LIMS1-215ENST00000544547 PAXBP1Q9Y5B6 917 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 TTC5Q8N0Z6 440 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 GTF3C6Q969F1 213 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 ZSCAN22P10073 491 aaPredicted RBP16.79■□□□□ 0.28
LIMS1-215ENST00000544547 KRT24Q2M2I5 525 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 ANO6Q4KMQ2 910 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 PRPF40BQ6NWY9 871 aaKnown RBP16.79■□□□□ 0.28
LIMS1-215ENST00000544547 CLASRPQ8N2M8 674 aaKnown RBP16.79■□□□□ 0.28
LIMS1-215ENST00000544547 LIMCH1Q9UPQ0 1083 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 TRIM35Q9UPQ4 493 aa16.79■□□□□ 0.28
LIMS1-215ENST00000544547 DNAJC2Q99543 621 aaKnown RBP16.78■□□□□ 0.28
LIMS1-215ENST00000544547 NSFL1CQ9UNZ2 370 aaKnown RBP16.78■□□□□ 0.28
LIMS1-215ENST00000544547 FAM69CQ0P6D2 419 aa16.78■□□□□ 0.28
LIMS1-215ENST00000544547 PSMA5P28066 241 aa16.78■□□□□ 0.28
LIMS1-215ENST00000544547 EVA1CP58658 441 aa16.78■□□□□ 0.28
LIMS1-215ENST00000544547 ANKRD36BQ8N2N9 1353 aa16.78■□□□□ 0.28
LIMS1-215ENST00000544547 BMS1Q14692 1282 aaKnown RBP16.78■□□□□ 0.28
LIMS1-215ENST00000544547 FSD1Q9BTV5 496 aa16.78■□□□□ 0.28
LIMS1-215ENST00000544547 MEIS3Q99687 375 aa16.77■□□□□ 0.28
LIMS1-215ENST00000544547 SERPINC1P01008 464 aa16.77■□□□□ 0.28
LIMS1-215ENST00000544547 SKILP12757 684 aa16.77■□□□□ 0.28
LIMS1-215ENST00000544547 PSME1Q06323 249 aa16.77■□□□□ 0.28
LIMS1-215ENST00000544547 FAM200AQ8TCP9 573 aa16.77■□□□□ 0.28
LIMS1-215ENST00000544547 NUDT16Q96DE0 195 aaKnown RBP16.77■□□□□ 0.28
LIMS1-215ENST00000544547 NECAB1Q8N987 351 aa16.77■□□□□ 0.27
LIMS1-215ENST00000544547 ZBTB7BO15156 539 aaPredicted RBP16.76■□□□□ 0.27
LIMS1-215ENST00000544547 NLRP6P59044 892 aa16.76■□□□□ 0.27
LIMS1-215ENST00000544547 SFPQP23246 707 aaKnown RBP eCLIP16.76■□□□□ 0.277e-7■□□□□ 9.6
LIMS1-215ENST00000544547 CEP57L1Q8IYX8 460 aa16.76■□□□□ 0.27
LIMS1-215ENST00000544547 DACT1Q9NYF0 836 aa16.76■□□□□ 0.27
LIMS1-215ENST00000544547 PPFIA3O75145 1194 aa16.76■□□□□ 0.27
LIMS1-215ENST00000544547 VAMP4O75379 141 aa16.76■□□□□ 0.27
LIMS1-215ENST00000544547 GPATCH11Q8N954 259 aa16.76■□□□□ 0.27
LIMS1-215ENST00000544547 DNAJC25Q9H1X3 360 aa16.76■□□□□ 0.27
LIMS1-215ENST00000544547 KDM5DQ9BY66 1539 aa16.75■□□□□ 0.27
LIMS1-215ENST00000544547 CPLX1O14810 134 aa16.75■□□□□ 0.27
LIMS1-215ENST00000544547 UTP14CQ5TAP6 766 aaKnown RBP16.75■□□□□ 0.27
LIMS1-215ENST00000544547 SYNE3Q6ZMZ3 975 aa16.75■□□□□ 0.27
LIMS1-215ENST00000544547 LMAN1P49257 510 aa16.75■□□□□ 0.27
LIMS1-215ENST00000544547 ATP2B3Q16720 1220 aa16.75■□□□□ 0.27
LIMS1-215ENST00000544547 SMTNL1A8MU46 457 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms