RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 C5P01031 1676 aa6.9□□□□□ -1.3
LIMS1-214ENST00000542845 LTN1O94822 1766 aa6.9□□□□□ -1.3
LIMS1-214ENST00000542845 CD44P16070 742 aaKnown RBP6.9□□□□□ -1.3
LIMS1-214ENST00000542845 FAM161AQ3B820 660 aa6.9□□□□□ -1.3
LIMS1-214ENST00000542845 SMC1BQ8NDV3 1235 aa6.9□□□□□ -1.3
LIMS1-214ENST00000542845 ZCRB1Q8TBF4 217 aaKnown RBP6.9□□□□□ -1.3
LIMS1-214ENST00000542845 PCDH10Q9P2E7 1040 aa6.9□□□□□ -1.3
LIMS1-214ENST00000542845 KDM2BQ8NHM5 1336 aa6.9□□□□□ -1.3
LIMS1-214ENST00000542845 ANKRD36BQ8N2N9 1353 aa6.9□□□□□ -1.31
LIMS1-214ENST00000542845 KCPQ6ZWJ8 1503 aa6.9□□□□□ -1.31
LIMS1-214ENST00000542845 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.89□□□□□ -1.31
LIMS1-214ENST00000542845 MPRIPQ6WCQ1 1025 aa6.89□□□□□ -1.31
LIMS1-214ENST00000542845 RNF181Q9P0P0 153 aa6.89□□□□□ -1.31
LIMS1-214ENST00000542845 TTC21AQ8NDW8 1320 aa6.89□□□□□ -1.31
LIMS1-214ENST00000542845 KTN1Q86UP2 1357 aaKnown RBP6.89□□□□□ -1.31
LIMS1-214ENST00000542845 TAF1LQ8IZX4 1826 aa6.88□□□□□ -1.31
LIMS1-214ENST00000542845 NFAT5O94916 1531 aa6.88□□□□□ -1.31
LIMS1-214ENST00000542845 NSD2O96028 1365 aa6.88□□□□□ -1.31
LIMS1-214ENST00000542845 PRR29P0C7W0 189 aa6.88□□□□□ -1.31
LIMS1-214ENST00000542845 AMIGO3Q86WK7 504 aa6.88□□□□□ -1.31
LIMS1-214ENST00000542845 NME9Q86XW9 330 aa6.88□□□□□ -1.31
LIMS1-214ENST00000542845 STAC3Q96MF2 364 aa6.88□□□□□ -1.31
LIMS1-214ENST00000542845 TSHZ2Q9NRE2 1034 aa6.88□□□□□ -1.31
LIMS1-214ENST00000542845 MKRN1Q9UHC7 482 aaKnown RBP6.88□□□□□ -1.31
LIMS1-214ENST00000542845 KIAA1210Q9ULL0 1709 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 USP54Q70EL1 1684 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 EVC2Q86UK5 1308 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 MMP10P09238 476 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 DPEP1P16444 411 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 TGFB2P61812 414 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 NBR1Q14596 966 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 DCBLD2Q96PD2 775 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 RGPD2P0DJD1 1756 aa6.87□□□□□ -1.31
LIMS1-214ENST00000542845 PALLDQ8WX93 1383 aa6.86□□□□□ -1.31
LIMS1-214ENST00000542845 FOXN1O15353 648 aa6.86□□□□□ -1.31
LIMS1-214ENST00000542845 USHBP1Q8N6Y0 703 aa6.86□□□□□ -1.31
LIMS1-214ENST00000542845 C4BP0C0L5 1744 aa6.86□□□□□ -1.31
LIMS1-214ENST00000542845 PKD1L3Q7Z443 1732 aa6.86□□□□□ -1.31
LIMS1-214ENST00000542845 CICQ96RK0 1608 aaPredicted RBP6.86□□□□□ -1.31
LIMS1-214ENST00000542845 PXDNLA1KZ92 1463 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 CCDC85CA6NKD9 419 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 GNPATO15228 680 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 HMGB2P26583 209 aaKnown RBP6.85□□□□□ -1.31
LIMS1-214ENST00000542845 AMPHP49418 695 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 CLCN6P51797 869 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 MLLT1Q03111 559 aaPredicted RBP6.85□□□□□ -1.31
LIMS1-214ENST00000542845 TMC1Q8TDI8 760 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 AIDAQ96BJ3 306 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 OTUD5Q96G74 571 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 UBR3Q6ZT12 1888 aa6.85□□□□□ -1.31
LIMS1-214ENST00000542845 PCNTO95613 3336 aa6.84□□□□□ -1.31
LIMS1-214ENST00000542845 PLEKHG2Q9H7P9 1386 aa6.84□□□□□ -1.31
LIMS1-214ENST00000542845 TNRC6CQ9HCJ0 1690 aaKnown RBP6.84□□□□□ -1.31
LIMS1-214ENST00000542845 POTEMA6NI47 508 aa6.84□□□□□ -1.31
LIMS1-214ENST00000542845 VEGFAP15692 232 aaPredicted RBP6.84□□□□□ -1.31
LIMS1-214ENST00000542845 FBLN1P23142 703 aa6.84□□□□□ -1.31
LIMS1-214ENST00000542845 SSFA2P28290 1259 aa6.84□□□□□ -1.31
LIMS1-214ENST00000542845 IP6K1Q92551 441 aa6.84□□□□□ -1.31
LIMS1-214ENST00000542845 CCDC87Q9NVE4 849 aa6.84□□□□□ -1.31
LIMS1-214ENST00000542845 PIM2Q9P1W9 311 aa6.84□□□□□ -1.31
LIMS1-214ENST00000542845 TATP17735 454 aaPredicted RBP6.83□□□□□ -1.32
LIMS1-214ENST00000542845 LBX1P52954 281 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 TMF1P82094 1093 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 DALRD3Q5D0E6 543 aaKnown RBP6.83□□□□□ -1.32
LIMS1-214ENST00000542845 LINC00116Q8NCU8 138 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 RAPGEF4Q8WZA2 1011 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 SMARCC1Q92922 1105 aaPredicted RBP6.83□□□□□ -1.32
LIMS1-214ENST00000542845 ABHD8Q96I13 439 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 FARP1Q9Y4F1 1045 aaPredicted RBP6.83□□□□□ -1.32
LIMS1-214ENST00000542845 PARP3Q9Y6F1 533 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 KIAA1551Q9HCM1 1747 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 TOGARAM1Q9Y4F4 1720 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 SBF1O95248 1867 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 ITGB4P16144 1822 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 KIF13BQ9NQT8 1826 aa6.83□□□□□ -1.32
LIMS1-214ENST00000542845 CCDC88AQ3V6T2 1871 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 ATP6V1AP38606 617 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 CTCFP49711 727 aaPredicted RBP6.82□□□□□ -1.32
LIMS1-214ENST00000542845 RASSF7Q02833 373 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 TRAPPC3LQ5T215 181 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 POTEGQ6S5H5 508 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 NLGN1Q8N2Q7 840 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 PRDM10Q9NQV6 1147 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 ARFGEF1Q9Y6D6 1849 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 NSD3Q9BZ95 1437 aa6.82□□□□□ -1.32
LIMS1-214ENST00000542845 MEGF6O75095 1541 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 FAM208AQ9UK61 1670 aaKnown RBP6.81□□□□□ -1.32
LIMS1-214ENST00000542845 LOC102724428A0A0B4J2F2 783 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 GLTPD2A6NH11 291 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 KCNA3P22001 575 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 CHRNA5P30532 468 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 SIK1P57059 783 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 NBPF6Q5VWK0 638 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 HDGFL2Q7Z4V5 671 aaPredicted RBP6.81□□□□□ -1.32
LIMS1-214ENST00000542845 PIGBQ92521 554 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 NBPF4Q96M43 638 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 BRCA1P38398 1863 aaKnown RBP6.81□□□□□ -1.32
LIMS1-214ENST00000542845 USP31Q70CQ4 1352 aa6.81□□□□□ -1.32
LIMS1-214ENST00000542845 POTEB2H3BUK9 544 aa6.8□□□□□ -1.32
LIMS1-214ENST00000542845 HOXC9P31274 260 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms