RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 NLGN1Q8N2Q7 840 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 KCNH5Q8NCM2 988 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 CDK19Q9BWU1 502 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 ROCK1Q13464 1354 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 C5P01031 1676 aa4.9□□□□□ -1.62
CHD4-209ENST00000542717 USP54Q70EL1 1684 aa4.9□□□□□ -1.62
CHD4-209ENST00000542717 PLEKHG3A1L390 1219 aa4.9□□□□□ -1.63
CHD4-209ENST00000542717 DDNO94850 711 aaPredicted RBP4.9□□□□□ -1.63
CHD4-209ENST00000542717 MAP2K2P36507 400 aa4.9□□□□□ -1.63
CHD4-209ENST00000542717 CNTROBQ8N137 903 aa4.9□□□□□ -1.63
CHD4-209ENST00000542717 RGPD5Q99666 1765 aa4.9□□□□□ -1.63
CHD4-209ENST00000542717 NSD2O96028 1365 aa4.9□□□□□ -1.63
CHD4-209ENST00000542717 PALLDQ8WX93 1383 aa4.9□□□□□ -1.63
CHD4-209ENST00000542717 KIAA1551Q9HCM1 1747 aa4.89□□□□□ -1.63
CHD4-209ENST00000542717 KIF13BQ9NQT8 1826 aa4.89□□□□□ -1.63
CHD4-209ENST00000542717 NBPF1Q3BBV0 1214 aa4.89□□□□□ -1.63
CHD4-209ENST00000542717 MAP1SQ66K74 1059 aaPredicted RBP4.89□□□□□ -1.63
CHD4-209ENST00000542717 MPRIPQ6WCQ1 1025 aa4.89□□□□□ -1.63
CHD4-209ENST00000542717 SLC4A1APQ9BWU0 796 aaKnown RBP4.89□□□□□ -1.63
CHD4-209ENST00000542717 TAF1DQ9H5J8 278 aaPredicted RBP4.89□□□□□ -1.63
CHD4-209ENST00000542717 COLQQ9Y215 455 aaPredicted RBP4.89□□□□□ -1.63
CHD4-209ENST00000542717 C4BP0C0L5 1744 aa4.89□□□□□ -1.63
CHD4-209ENST00000542717 DOT1LQ8TEK3 1739 aa4.89□□□□□ -1.63
CHD4-209ENST00000542717 CUL9Q8IWT3 2517 aa4.88□□□□□ -1.63
CHD4-209ENST00000542717 BRCA1P38398 1863 aaKnown RBP4.88□□□□□ -1.63
CHD4-209ENST00000542717 SRPK2P78362 688 aaKnown RBP4.88□□□□□ -1.63
CHD4-209ENST00000542717 TRAPPC3LQ5T215 181 aa4.88□□□□□ -1.63
CHD4-209ENST00000542717 CIAPIN1Q6FI81 312 aa4.88□□□□□ -1.63
CHD4-209ENST00000542717 ANKRD24Q8TF21 1146 aa4.88□□□□□ -1.63
CHD4-209ENST00000542717 SMARCC1Q92922 1105 aaPredicted RBP4.88□□□□□ -1.63
CHD4-209ENST00000542717 DDX21Q9NR30 783 aaKnown RBP eCLIP4.88□□□□□ -1.63
CHD4-209ENST00000542717 TIAM2Q8IVF5 1701 aa4.88□□□□□ -1.63
CHD4-209ENST00000542717 KDM6AO15550 1401 aaPredicted RBP4.88□□□□□ -1.63
CHD4-209ENST00000542717 SLIT3O75094 1523 aa4.87□□□□□ -1.63
CHD4-209ENST00000542717 LTBP1Q14766 1721 aa4.87□□□□□ -1.63
CHD4-209ENST00000542717 RFC4P35249 363 aa4.87□□□□□ -1.63
CHD4-209ENST00000542717 BRPF1P55201 1214 aaPredicted RBP4.87□□□□□ -1.63
CHD4-209ENST00000542717 CTU1Q7Z7A3 348 aaKnown RBP4.87□□□□□ -1.63
CHD4-209ENST00000542717 ZCRB1Q8TBF4 217 aaKnown RBP4.87□□□□□ -1.63
CHD4-209ENST00000542717 LTV1Q96GA3 475 aaPredicted RBP4.87□□□□□ -1.63
CHD4-209ENST00000542717 CABP2Q9NPB3 220 aa4.87□□□□□ -1.63
CHD4-209ENST00000542717 HACL1Q9UJ83 578 aa4.87□□□□□ -1.63
CHD4-209ENST00000542717 HPS5Q9UPZ3 1129 aa4.87□□□□□ -1.63
CHD4-209ENST00000542717 RTCBQ9Y3I0 505 aaKnown RBP4.87□□□□□ -1.63
CHD4-209ENST00000542717 QRICH2Q9H0J4 1663 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 TAF1LQ8IZX4 1826 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 CCDC88AQ3V6T2 1871 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 UBR3Q6ZT12 1888 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 EPHX2P34913 555 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 PNMA8AQ86V59 439 aaPredicted RBP4.86□□□□□ -1.63
CHD4-209ENST00000542717 TTLL6Q8N841 843 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 LINC00116Q8NCU8 138 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 COL25A1Q9BXS0 654 aaPredicted RBP4.86□□□□□ -1.63
CHD4-209ENST00000542717 ADAMTS7Q9UKP4 1686 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 TOGARAM1Q9Y4F4 1720 aa4.86□□□□□ -1.63
CHD4-209ENST00000542717 NFKBIEO00221 500 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 GYS1P13807 737 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 ATP6V1AP38606 617 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 AKAP4Q5JQC9 854 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 BICDL1Q6ZP65 573 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 HDAC9Q9UKV0 1011 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 TLL2Q9Y6L7 1015 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 C4AP0C0L4 1744 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 A0A0C4DFX4 3053 aa4.85□□□□□ -1.63
CHD4-209ENST00000542717 THSD7BQ9C0I4 1608 aa4.84□□□□□ -1.63
CHD4-209ENST00000542717 LOC102724428A0A0B4J2F2 783 aa4.84□□□□□ -1.63
CHD4-209ENST00000542717 COL9A1P20849 921 aa4.84□□□□□ -1.63
CHD4-209ENST00000542717 SIK1P57059 783 aa4.84□□□□□ -1.63
CHD4-209ENST00000542717 FMR1Q06787 632 aaKnown RBP eCLIP4.84□□□□□ -1.632e-7■■■□□ 19.2
CHD4-209ENST00000542717 NOGQ13253 232 aa4.84□□□□□ -1.63
CHD4-209ENST00000542717 ARHGEF1Q92888 912 aaKnown RBP4.84□□□□□ -1.63
CHD4-209ENST00000542717 TAOK3Q9H2K8 898 aa4.84□□□□□ -1.63
CHD4-209ENST00000542717 CABP1Q9NZU7 370 aa4.84□□□□□ -1.63
CHD4-209ENST00000542717 TRIOBPQ9H2D6 2365 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 RNF123Q5XPI4 1314 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 H0YIN7 160 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 C21orf2O43822 256 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 TRPA1O75762 1119 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 PKN2Q16513 984 aaKnown RBP4.83□□□□□ -1.64
CHD4-209ENST00000542717 C2CD5Q86YS7 1000 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 CCDC24Q8N4L8 307 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 ZNF622Q969S3 477 aaKnown RBP eCLIP4.83□□□□□ -1.642e-8■■■□□ 15.6
CHD4-209ENST00000542717 L3MBTL3Q96JM7 780 aaPredicted RBP4.83□□□□□ -1.64
CHD4-209ENST00000542717 ZNF408Q9H9D4 720 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 PRDM6Q9NQX0 595 aa4.83□□□□□ -1.64
CHD4-209ENST00000542717 TTC21BQ7Z4L5 1316 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 SCN4AP35499 1836 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 TRAF5O00463 557 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 CELF2O95319 508 aaKnown RBP4.82□□□□□ -1.64
CHD4-209ENST00000542717 ADRA2BP18089 450 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 DDR1Q08345 913 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 ITPK1Q13572 414 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 CST9Q5W186 159 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 CHRDL2Q6WN34 429 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 SAPCD2Q86UD0 394 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 SYNE4Q8N205 404 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 FAM122AQ96E09 287 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 KDM2AQ9Y2K7 1162 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 MEGF6O75095 1541 aa4.82□□□□□ -1.64
CHD4-209ENST00000542717 LMOD1P29536 600 aaPredicted RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms