RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CALD1Q05682 793 aaKnown RBP22.41■■□□□ 1.18
LIG1-204ENST00000542460 TAF7Q15545 349 aaPredicted RBP22.41■■□□□ 1.18
LIG1-204ENST00000542460 NHSQ6T4R5 1651 aa22.41■■□□□ 1.18
LIG1-204ENST00000542460 SBF2Q86WG5 1849 aa22.39■■□□□ 1.18
LIG1-204ENST00000542460 HNRNPUQ00839 825 aaKnown RBP eCLIP22.39■■□□□ 1.17
LIG1-204ENST00000542460 DEFB132Q7Z7B7 95 aa22.39■■□□□ 1.17
LIG1-204ENST00000542460 BTBD11A6QL63 1104 aa22.38■■□□□ 1.17
LIG1-204ENST00000542460 APBA3O96018 575 aa22.38■■□□□ 1.17
LIG1-204ENST00000542460 WDR63Q8IWG1 891 aa22.37■■□□□ 1.17
LIG1-204ENST00000542460 SMARCC1Q92922 1105 aaPredicted RBP22.36■■□□□ 1.17
LIG1-204ENST00000542460 BABAM1Q9NWV8 329 aa22.36■■□□□ 1.17
LIG1-204ENST00000542460 ASAP1Q9ULH1 1129 aa22.36■■□□□ 1.17
LIG1-204ENST00000542460 KAT6BQ8WYB5 2073 aa22.36■■□□□ 1.17
LIG1-204ENST00000542460 ITGB4P16144 1822 aa22.36■■□□□ 1.17
LIG1-204ENST00000542460 ATG3Q9NT62 314 aa22.36■■□□□ 1.17
LIG1-204ENST00000542460 ZNF521Q96K83 1311 aa22.35■■□□□ 1.17
LIG1-204ENST00000542460 PLSCR1O15162 318 aa22.35■■□□□ 1.17
LIG1-204ENST00000542460 CFAP44Q96MT7 982 aa22.35■■□□□ 1.17
LIG1-204ENST00000542460 IL16Q14005 1332 aa22.34■■□□□ 1.17
LIG1-204ENST00000542460 SLC39A6Q13433 755 aa22.34■■□□□ 1.17
LIG1-204ENST00000542460 ZNF790Q6PG37 636 aa22.34■■□□□ 1.17
LIG1-204ENST00000542460 IFT57Q9NWB7 429 aa22.34■■□□□ 1.17
LIG1-204ENST00000542460 MIS18AQ9NYP9 233 aa22.34■■□□□ 1.17
LIG1-204ENST00000542460 CHL1O00533 1208 aa22.33■■□□□ 1.17
LIG1-204ENST00000542460 GNAI1P63096 354 aa22.33■■□□□ 1.17
LIG1-204ENST00000542460 TTC5Q8N0Z6 440 aa22.33■■□□□ 1.17
LIG1-204ENST00000542460 LAS1LQ9Y4W2 734 aaKnown RBP22.33■■□□□ 1.17
LIG1-204ENST00000542460 VIRMAQ69YN4 1812 aaKnown RBP22.33■■□□□ 1.17
LIG1-204ENST00000542460 BAG6P46379 1132 aa22.32■■□□□ 1.16
LIG1-204ENST00000542460 TSPYL4Q9UJ04 414 aa22.32■■□□□ 1.16
LIG1-204ENST00000542460 PALLDQ8WX93 1383 aa22.32■■□□□ 1.16
LIG1-204ENST00000542460 BTAF1O14981 1849 aa22.32■■□□□ 1.16
LIG1-204ENST00000542460 ZNF853P0CG23 659 aa22.31■■□□□ 1.16
LIG1-204ENST00000542460 SIPA1L3O60292 1781 aaPredicted RBP22.3■■□□□ 1.16
LIG1-204ENST00000542460 TNS1Q9HBL0 1735 aaKnown RBP22.3■■□□□ 1.16
LIG1-204ENST00000542460 SRCAPQ6ZRS2 3230 aa22.3■■□□□ 1.16
LIG1-204ENST00000542460 GOLGA2Q08379 1002 aa22.3■■□□□ 1.16
LIG1-204ENST00000542460 KCNQ3O43525 872 aa22.29■■□□□ 1.16
LIG1-204ENST00000542460 PTCD1O75127 700 aaKnown RBP22.29■■□□□ 1.16
LIG1-204ENST00000542460 RBM42Q9BTD8 480 aaKnown RBP22.29■■□□□ 1.16
LIG1-204ENST00000542460 EN1Q05925 392 aaPredicted RBP22.28■■□□□ 1.16
LIG1-204ENST00000542460 MBIPQ9NS73 344 aa22.28■■□□□ 1.16
LIG1-204ENST00000542460 ZBED9Q6R2W3 1325 aa22.28■■□□□ 1.16
LIG1-204ENST00000542460 LOC102724428A0A0B4J2F2 783 aa22.27■■□□□ 1.16
LIG1-204ENST00000542460 SIK1P57059 783 aa22.27■■□□□ 1.16
LIG1-204ENST00000542460 FMNL2Q96PY5 1086 aa22.27■■□□□ 1.16
LIG1-204ENST00000542460 CAMKK2Q96RR4 588 aa22.27■■□□□ 1.16
LIG1-204ENST00000542460 ZNF496Q96IT1 587 aaPredicted RBP22.26■■□□□ 1.15
LIG1-204ENST00000542460 PAPPAQ13219 1627 aa22.26■■□□□ 1.15
LIG1-204ENST00000542460 TXNRD1Q16881 649 aa22.26■■□□□ 1.15
LIG1-204ENST00000542460 SLC27A3Q5K4L6 730 aa22.26■■□□□ 1.15
LIG1-204ENST00000542460 MYH16Q9H6N6 1097 aa22.26■■□□□ 1.15
LIG1-204ENST00000542460 SPINK5Q9NQ38 1064 aaPredicted RBP22.26■■□□□ 1.15
LIG1-204ENST00000542460 E9PSI1 815 aa22.25■■□□□ 1.15
LIG1-204ENST00000542460 EIF4A1P60842 406 aaKnown RBP22.25■■□□□ 1.15
LIG1-204ENST00000542460 EZH2Q15910 746 aaKnown RBP22.25■■□□□ 1.15
LIG1-204ENST00000542460 VSIG10Q8N0Z9 540 aa22.25■■□□□ 1.15
LIG1-204ENST00000542460 PROM2Q8N271 834 aa22.25■■□□□ 1.15
LIG1-204ENST00000542460 CCNL1Q9UK58 526 aaPredicted RBP22.25■■□□□ 1.15
LIG1-204ENST00000542460 ATP6V1AP38606 617 aa22.24■■□□□ 1.15
LIG1-204ENST00000542460 KCPQ6ZWJ8 1503 aa22.24■■□□□ 1.15
LIG1-204ENST00000542460 TSR2Q969E8 191 aaKnown RBP22.23■■□□□ 1.15
LIG1-204ENST00000542460 YTHDC1Q96MU7 727 aaKnown RBP22.23■■□□□ 1.15
LIG1-204ENST00000542460 SLC4A9Q96Q91 983 aa22.23■■□□□ 1.15
LIG1-204ENST00000542460 HEG1Q9ULI3 1381 aa22.23■■□□□ 1.15
LIG1-204ENST00000542460 HMGB2P26583 209 aaKnown RBP22.22■■□□□ 1.15
LIG1-204ENST00000542460 SLFN5Q08AF3 891 aa22.22■■□□□ 1.15
LIG1-204ENST00000542460 KDM3BQ7LBC6 1761 aa22.21■■□□□ 1.15
LIG1-204ENST00000542460 CDCA7LQ96GN5 454 aa22.21■■□□□ 1.15
LIG1-204ENST00000542460 FANCIQ9NVI1 1328 aa22.21■■□□□ 1.15
LIG1-204ENST00000542460 SNRPA1P09661 255 aaKnown RBP22.21■■□□□ 1.15
LIG1-204ENST00000542460 TEX13AQ9BXU3 409 aaPredicted RBP22.21■■□□□ 1.15
LIG1-204ENST00000542460 LRRC4BQ9NT99 713 aa22.21■■□□□ 1.15
LIG1-204ENST00000542460 RGPD3A6NKT7 1758 aaPredicted RBP22.2■■□□□ 1.14
LIG1-204ENST00000542460 RGPD4Q7Z3J3 1758 aa22.2■■□□□ 1.14
LIG1-204ENST00000542460 KCNQ4P56696 695 aa22.2■■□□□ 1.14
LIG1-204ENST00000542460 LY75O60449 1722 aa22.2■■□□□ 1.14
LIG1-204ENST00000542460 UBR2Q8IWV8 1755 aa22.2■■□□□ 1.14
LIG1-204ENST00000542460 GIGYF1O75420 1035 aaPredicted RBP22.19■■□□□ 1.14
LIG1-204ENST00000542460 ITPK1Q13572 414 aa22.19■■□□□ 1.14
LIG1-204ENST00000542460 DNAJC10Q8IXB1 793 aa22.18■■□□□ 1.14
LIG1-204ENST00000542460 TRMT2AQ8IZ69 625 aaKnown RBP22.18■■□□□ 1.14
LIG1-204ENST00000542460 KRT24Q2M2I5 525 aa22.16■■□□□ 1.14
LIG1-204ENST00000542460 PRAMEF22A3QJZ6 481 aa22.16■■□□□ 1.14
LIG1-204ENST00000542460 STARD3NLO95772 234 aa22.16■■□□□ 1.14
LIG1-204ENST00000542460 HOXB7P09629 217 aa22.16■■□□□ 1.14
LIG1-204ENST00000542460 DUSP27Q5VZP5 1158 aa22.16■■□□□ 1.14
LIG1-204ENST00000542460 C8orf58Q8NAV2 365 aa22.16■■□□□ 1.14
LIG1-204ENST00000542460 ZNF831Q5JPB2 1677 aa22.15■■□□□ 1.14
LIG1-204ENST00000542460 PSDA5PKW4 1024 aaPredicted RBP22.15■■□□□ 1.14
LIG1-204ENST00000542460 EXOSC9Q06265 439 aaKnown RBP22.15■■□□□ 1.14
LIG1-204ENST00000542460 LINC00116Q8NCU8 138 aa22.15■■□□□ 1.14
LIG1-204ENST00000542460 USP16Q9Y5T5 823 aa22.15■■□□□ 1.14
LIG1-204ENST00000542460 SOS1Q07889 1333 aaPredicted RBP22.14■■□□□ 1.13
LIG1-204ENST00000542460 ELL2O00472 640 aaPredicted RBP22.14■■□□□ 1.13
LIG1-204ENST00000542460 CYP19A1P11511 503 aaPredicted RBP22.14■■□□□ 1.13
LIG1-204ENST00000542460 TSPYL6Q8N831 410 aa22.12■■□□□ 1.13
LIG1-204ENST00000542460 CICQ96RK0 1608 aaPredicted RBP22.12■■□□□ 1.13
LIG1-204ENST00000542460 RREB1Q92766 1687 aa22.12■■□□□ 1.13
LIG1-204ENST00000542460 TWISTNBQ3B726 338 aaPredicted RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms