RNA–Protein interactions for RNA: ENST00000541817.5

CHFR-220, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-220ENST00000541817 MLLT1Q03111 559 aaPredicted RBP14.01□□□□□ -0.17
CHFR-220ENST00000541817 TMC1Q8TDI8 760 aa14.01□□□□□ -0.17
CHFR-220ENST00000541817 SMARCC1Q92922 1105 aaPredicted RBP14.01□□□□□ -0.17
CHFR-220ENST00000541817 PIM2Q9P1W9 311 aa14.01□□□□□ -0.17
CHFR-220ENST00000541817 MAP3K19Q56UN5 1328 aa14□□□□□ -0.17
CHFR-220ENST00000541817 MAP2P11137 1827 aaKnown RBP14□□□□□ -0.17
CHFR-220ENST00000541817 CHRNA5P30532 468 aa14□□□□□ -0.17
CHFR-220ENST00000541817 AMPHP49418 695 aa14□□□□□ -0.17
CHFR-220ENST00000541817 CTCFP49711 727 aaPredicted RBP14□□□□□ -0.17
CHFR-220ENST00000541817 DALRD3Q5D0E6 543 aaKnown RBP14□□□□□ -0.17
CHFR-220ENST00000541817 CD163L1Q9NR16 1453 aa13.99□□□□□ -0.17
CHFR-220ENST00000541817 C4AP0C0L4 1744 aa13.99□□□□□ -0.17
CHFR-220ENST00000541817 CCDC85CA6NKD9 419 aa13.99□□□□□ -0.17
CHFR-220ENST00000541817 CYP27B1O15528 508 aa13.99□□□□□ -0.17
CHFR-220ENST00000541817 RAPGEF4Q8WZA2 1011 aa13.99□□□□□ -0.17
CHFR-220ENST00000541817 PARP3Q9Y6F1 533 aa13.99□□□□□ -0.17
CHFR-220ENST00000541817 GLTPD2A6NH11 291 aa13.98□□□□□ -0.17
CHFR-220ENST00000541817 POTECB2RU33 542 aa13.98□□□□□ -0.17
CHFR-220ENST00000541817 TATP17735 454 aaPredicted RBP13.98□□□□□ -0.17
CHFR-220ENST00000541817 HMGB2P26583 209 aaKnown RBP13.98□□□□□ -0.17
CHFR-220ENST00000541817 ATP6V1AP38606 617 aa13.98□□□□□ -0.17
CHFR-220ENST00000541817 NLGN1Q8N2Q7 840 aa13.98□□□□□ -0.17
CHFR-220ENST00000541817 SLC12A5Q9H2X9 1139 aa13.98□□□□□ -0.17
CHFR-220ENST00000541817 ASAP1Q9ULH1 1129 aa13.98□□□□□ -0.17
CHFR-220ENST00000541817 TRAPPC3LQ5T215 181 aa13.97□□□□□ -0.17
CHFR-220ENST00000541817 AIDAQ96BJ3 306 aa13.97□□□□□ -0.17
CHFR-220ENST00000541817 CCDC88AQ3V6T2 1871 aa13.97□□□□□ -0.17
CHFR-220ENST00000541817 PCDH11XQ9BZA7 1347 aa13.96□□□□□ -0.17
CHFR-220ENST00000541817 PCDH11YQ9BZA8 1340 aa13.96□□□□□ -0.17
CHFR-220ENST00000541817 GYS1P13807 737 aa13.96□□□□□ -0.17
CHFR-220ENST00000541817 ARHGEF1Q92888 912 aaKnown RBP13.96□□□□□ -0.17
CHFR-220ENST00000541817 CREBZFQ9NS37 354 aa13.96□□□□□ -0.17
CHFR-220ENST00000541817 POTEIP0CG38 1075 aa13.95□□□□□ -0.18
CHFR-220ENST00000541817 POTEJP0CG39 1038 aa13.95□□□□□ -0.18
CHFR-220ENST00000541817 VEGFBP49765 207 aa13.95□□□□□ -0.18
CHFR-220ENST00000541817 RRS1Q15050 365 aaKnown RBP13.95□□□□□ -0.18
CHFR-220ENST00000541817 HDGFL2Q7Z4V5 671 aaPredicted RBP13.95□□□□□ -0.18
CHFR-220ENST00000541817 RTCBQ9Y3I0 505 aaKnown RBP13.94□□□□□ -0.18
CHFR-220ENST00000541817 CNTNAP1P78357 1384 aa13.94□□□□□ -0.18
CHFR-220ENST00000541817 HSPA8P11142 646 aaKnown RBP13.93□□□□□ -0.18
CHFR-220ENST00000541817 TRIM26Q12899 539 aaPredicted RBP13.93□□□□□ -0.18
CHFR-220ENST00000541817 CFAP44Q96MT7 982 aa13.93□□□□□ -0.18
CHFR-220ENST00000541817 CGNL1Q0VF96 1302 aa13.92□□□□□ -0.18
CHFR-220ENST00000541817 EDC4Q6P2E9 1401 aaKnown RBP13.92□□□□□ -0.18
CHFR-220ENST00000541817 RFC4P35249 363 aa13.92□□□□□ -0.18
CHFR-220ENST00000541817 SRP68Q9UHB9 627 aaKnown RBP13.92□□□□□ -0.18
CHFR-220ENST00000541817 TIAM2Q8IVF5 1701 aa13.92□□□□□ -0.18
CHFR-220ENST00000541817 RGS19P49795 217 aa13.91□□□□□ -0.18
CHFR-220ENST00000541817 DDR1Q08345 913 aa13.91□□□□□ -0.18
CHFR-220ENST00000541817 CHADLQ6NUI6 762 aa13.91□□□□□ -0.18
CHFR-220ENST00000541817 WBP1LQ9NX94 342 aa13.91□□□□□ -0.18
CHFR-220ENST00000541817 TMOD3Q9NYL9 352 aa13.91□□□□□ -0.18
CHFR-220ENST00000541817 LMNB1P20700 586 aa13.9□□□□□ -0.18
CHFR-220ENST00000541817 COG3Q96JB2 828 aa13.9□□□□□ -0.18
CHFR-220ENST00000541817 SLC4A9Q96Q91 983 aa13.9□□□□□ -0.18
CHFR-220ENST00000541817 RBM42Q9BTD8 480 aaKnown RBP13.9□□□□□ -0.18
CHFR-220ENST00000541817 ATG3Q9NT62 314 aa13.9□□□□□ -0.18
CHFR-220ENST00000541817 A0A1W2PP64 1363 aa13.9□□□□□ -0.18
CHFR-220ENST00000541817 VIRMAQ69YN4 1812 aaKnown RBP13.9□□□□□ -0.18
CHFR-220ENST00000541817 FKBP8Q14318 412 aa13.89□□□□□ -0.19
CHFR-220ENST00000541817 KDM6AO15550 1401 aaPredicted RBP13.89□□□□□ -0.19
CHFR-220ENST00000541817 TNRC18O15417 2968 aaPredicted RBP13.88□□□□□ -0.19
CHFR-220ENST00000541817 ZC3H4Q9UPT8 1303 aaKnown RBP13.88□□□□□ -0.19
CHFR-220ENST00000541817 HSP90AB2PQ58FF8 381 aa13.87□□□□□ -0.19
CHFR-220ENST00000541817 RPS6KA4O75676 772 aa13.86□□□□□ -0.19
CHFR-220ENST00000541817 TERF2IPQ9NYB0 399 aa13.86□□□□□ -0.19
CHFR-220ENST00000541817 ZNF219Q9P2Y4 722 aaPredicted RBP13.86□□□□□ -0.19
CHFR-220ENST00000541817 MYH14Q7Z406 1995 aaKnown RBP13.85□□□□□ -0.19
CHFR-220ENST00000541817 ROCK2O75116 1388 aaKnown RBP13.85□□□□□ -0.19
CHFR-220ENST00000541817 NFKBIEO00221 500 aa13.85□□□□□ -0.19
CHFR-220ENST00000541817 NKX1-1Q15270 411 aaPredicted RBP13.85□□□□□ -0.19
CHFR-220ENST00000541817 DPY19L2Q6NUT2 758 aa13.85□□□□□ -0.19
CHFR-220ENST00000541817 SMG6Q86US8 1419 aaKnown RBP13.84□□□□□ -0.19
CHFR-220ENST00000541817 DDNO94850 711 aaPredicted RBP13.84□□□□□ -0.19
CHFR-220ENST00000541817 L3MBTL2Q969R5 705 aa13.84□□□□□ -0.19
CHFR-220ENST00000541817 TSKSQ9UJT2 592 aa13.84□□□□□ -0.19
CHFR-220ENST00000541817 PASKQ96RG2 1323 aa13.84□□□□□ -0.19
CHFR-220ENST00000541817 TMEM88BA6NKF7 163 aa13.83□□□□□ -0.2
CHFR-220ENST00000541817 POLRMTO00411 1230 aaKnown RBP13.83□□□□□ -0.2
CHFR-220ENST00000541817 ADRA2BP18089 450 aa13.83□□□□□ -0.2
CHFR-220ENST00000541817 KDRP35968 1356 aa13.83□□□□□ -0.2
CHFR-220ENST00000541817 COL5A3P25940 1745 aaPredicted RBP13.82□□□□□ -0.2
CHFR-220ENST00000541817 RC3H1Q5TC82 1133 aaKnown RBP13.82□□□□□ -0.2
CHFR-220ENST00000541817 GGNBP2Q9H3C7 697 aa13.82□□□□□ -0.2
CHFR-220ENST00000541817 RTL1A6NKG5 1358 aa13.82□□□□□ -0.2
CHFR-220ENST00000541817 DEFB115Q30KQ5 88 aa13.81□□□□□ -0.2
CHFR-220ENST00000541817 ERFEQ4G0M1 354 aa13.81□□□□□ -0.2
CHFR-220ENST00000541817 SPG7Q9UQ90 795 aa13.81□□□□□ -0.2
CHFR-220ENST00000541817 CNTNAP4Q9C0A0 1308 aa13.81□□□□□ -0.2
CHFR-220ENST00000541817 TM4SF1P30408 202 aa13.8□□□□□ -0.2
CHFR-220ENST00000541817 WDR33Q9C0J8 1336 aaKnown RBP13.8□□□□□ -0.2
CHFR-220ENST00000541817 USP42Q9H9J4 1324 aaKnown RBP13.8□□□□□ -0.2
CHFR-220ENST00000541817 AFDNP55196 1824 aaKnown RBP13.8□□□□□ -0.2
CHFR-220ENST00000541817 ITGBL1O95965 494 aaPredicted RBP13.79□□□□□ -0.2
CHFR-220ENST00000541817 PHKG2P15735 406 aa13.79□□□□□ -0.2
CHFR-220ENST00000541817 GRM1Q13255 1194 aa13.79□□□□□ -0.2
CHFR-220ENST00000541817 EAPPQ56P03 285 aaPredicted RBP13.79□□□□□ -0.2
CHFR-220ENST00000541817 C2CD5Q86YS7 1000 aa13.79□□□□□ -0.2
CHFR-220ENST00000541817 TTLL6Q8N841 843 aa13.79□□□□□ -0.2
CHFR-220ENST00000541817 INSRP06213 1382 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms