RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 FOXO3O43524 673 aa12.27□□□□□ -0.44
LMO3-227ENST00000541764 CCDC30Q5VVM6 783 aa12.27□□□□□ -0.44
LMO3-227ENST00000541764 MEIS3Q99687 375 aa12.27□□□□□ -0.44
LMO3-227ENST00000541764 CHMP4AQ9BY43 222 aa12.27□□□□□ -0.44
LMO3-227ENST00000541764 ADGRL3Q9HAR2 1447 aa12.27□□□□□ -0.44
LMO3-227ENST00000541764 MED1Q15648 1581 aaPredicted RBP12.27□□□□□ -0.44
LMO3-227ENST00000541764 NFAT5O94916 1531 aa12.27□□□□□ -0.44
LMO3-227ENST00000541764 FAM208AQ9UK61 1670 aaKnown RBP12.27□□□□□ -0.44
LMO3-227ENST00000541764 PTMSP20962 102 aa12.27□□□□□ -0.45
LMO3-227ENST00000541764 TAF7Q15545 349 aaPredicted RBP12.27□□□□□ -0.45
LMO3-227ENST00000541764 IP6K1Q92551 441 aa12.27□□□□□ -0.45
LMO3-227ENST00000541764 STK31Q9BXU1 1019 aa12.27□□□□□ -0.45
LMO3-227ENST00000541764 CEMIPQ8WUJ3 1361 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 NCAPD2Q15021 1401 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 DDX11L8A8MPP1 907 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 GNAI2P04899 355 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 GNAI3P08754 354 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 HOXB7P09629 217 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 RABEP1Q15276 862 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 L1TD1Q5T7N2 865 aaKnown RBP12.26□□□□□ -0.45
LMO3-227ENST00000541764 CLEC17AQ6ZS10 378 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 PHF8Q9UPP1 1060 aa12.26□□□□□ -0.45
LMO3-227ENST00000541764 LMTK3Q96Q04 1460 aa12.25□□□□□ -0.45
LMO3-227ENST00000541764 K7ELQ4 463 aaPredicted RBP12.25□□□□□ -0.45
LMO3-227ENST00000541764 G2E3Q7L622 706 aa12.25□□□□□ -0.45
LMO3-227ENST00000541764 ANKLE2Q86XL3 938 aa12.25□□□□□ -0.45
LMO3-227ENST00000541764 IL27Q8NEV9 243 aa12.25□□□□□ -0.45
LMO3-227ENST00000541764 IL17REQ8NFR9 667 aa12.25□□□□□ -0.45
LMO3-227ENST00000541764 USP26Q9BXU7 913 aa12.25□□□□□ -0.45
LMO3-227ENST00000541764 ISY1Q9ULR0 285 aaKnown RBP12.25□□□□□ -0.45
LMO3-227ENST00000541764 SALL3Q9BXA9 1300 aa12.24□□□□□ -0.45
LMO3-227ENST00000541764 ATXN8OSP0DMR3 200 aa12.24□□□□□ -0.45
LMO3-227ENST00000541764 FLIIQ13045 1269 aa12.24□□□□□ -0.45
LMO3-227ENST00000541764 RAB3GAP1Q15042 981 aa12.24□□□□□ -0.45
LMO3-227ENST00000541764 CASC1Q6TDU7 716 aa12.24□□□□□ -0.45
LMO3-227ENST00000541764 ABTB2Q8N961 1025 aa12.24□□□□□ -0.45
LMO3-227ENST00000541764 OVOS2A0A0G2JMS6 1433 aa12.24□□□□□ -0.45
LMO3-227ENST00000541764 FSD2A1L4K1 749 aa12.23□□□□□ -0.45
LMO3-227ENST00000541764 HSP90AB1P08238 724 aaKnown RBP12.23□□□□□ -0.45
LMO3-227ENST00000541764 ATP8B2P98198 1209 aa12.23□□□□□ -0.45
LMO3-227ENST00000541764 KCNH5Q8NCM2 988 aa12.23□□□□□ -0.45
LMO3-227ENST00000541764 MIS18AQ9NYP9 233 aa12.23□□□□□ -0.45
LMO3-227ENST00000541764 AOX1Q06278 1338 aa12.23□□□□□ -0.45
LMO3-227ENST00000541764 SOX12O15370 315 aa12.22□□□□□ -0.45
LMO3-227ENST00000541764 EPB41L2O43491 1005 aaKnown RBP12.22□□□□□ -0.45
LMO3-227ENST00000541764 SDSP20132 328 aa12.22□□□□□ -0.45
LMO3-227ENST00000541764 IL17RAQ96F46 866 aa12.22□□□□□ -0.45
LMO3-227ENST00000541764 MST1RQ04912 1400 aa12.22□□□□□ -0.45
LMO3-227ENST00000541764 REC8O95072 547 aa12.21□□□□□ -0.45
LMO3-227ENST00000541764 PDE1AP54750 535 aa12.21□□□□□ -0.45
LMO3-227ENST00000541764 C16orf71Q8IYS4 520 aaPredicted RBP12.21□□□□□ -0.45
LMO3-227ENST00000541764 STAP2Q9UGK3 403 aa12.21□□□□□ -0.45
LMO3-227ENST00000541764 SLIT3O75094 1523 aa12.21□□□□□ -0.45
LMO3-227ENST00000541764 SKOR2Q2VWA4 1001 aaPredicted RBP12.21□□□□□ -0.46
LMO3-227ENST00000541764 GBP4Q96PP9 640 aa12.21□□□□□ -0.46
LMO3-227ENST00000541764 SRCIN1Q9C0H9 1055 aa12.21□□□□□ -0.46
LMO3-227ENST00000541764 LTN1O94822 1766 aa12.2□□□□□ -0.46
LMO3-227ENST00000541764 IBTKQ9P2D0 1353 aaPredicted RBP12.2□□□□□ -0.46
LMO3-227ENST00000541764 LMO7Q8WWI1 1683 aa12.2□□□□□ -0.46
LMO3-227ENST00000541764 F6X3S4 739 aa12.2□□□□□ -0.46
LMO3-227ENST00000541764 TRAK2O60296 914 aa12.2□□□□□ -0.46
LMO3-227ENST00000541764 OTUD7AQ8TE49 926 aaPredicted RBP12.2□□□□□ -0.46
LMO3-227ENST00000541764 KDM3BQ7LBC6 1761 aa12.19□□□□□ -0.46
LMO3-227ENST00000541764 ADAMTSL3P82987 1691 aa12.19□□□□□ -0.46
LMO3-227ENST00000541764 ERC2O15083 957 aa12.19□□□□□ -0.46
LMO3-227ENST00000541764 CD2BP2O95400 341 aaKnown RBP12.19□□□□□ -0.46
LMO3-227ENST00000541764 FKBP5Q13451 457 aaPredicted RBP12.19□□□□□ -0.46
LMO3-227ENST00000541764 SPRYD3Q8NCJ5 442 aa12.19□□□□□ -0.46
LMO3-227ENST00000541764 TNPO1Q92973 898 aaKnown RBP12.19□□□□□ -0.46
LMO3-227ENST00000541764 TUBGCP6Q96RT7 1819 aa12.19□□□□□ -0.46
LMO3-227ENST00000541764 CAMTA1Q9Y6Y1 1673 aa12.19□□□□□ -0.46
LMO3-227ENST00000541764 SETD1BQ9UPS6 1966 aaKnown RBP12.18□□□□□ -0.46
LMO3-227ENST00000541764 SPDYE2BA6NHP3 402 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 SMARCA5O60264 1052 aaPredicted RBP12.18□□□□□ -0.46
LMO3-227ENST00000541764 RAB11FIP3O75154 756 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 SPDYE6P0CI01 402 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 EIF4A1P60842 406 aaKnown RBP12.18□□□□□ -0.46
LMO3-227ENST00000541764 SPDYE2Q495Y8 402 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 AMOTQ4VCS5 1084 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 AKAP4Q5JQC9 854 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 SLC4A10Q6U841 1118 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 SSH3Q8TE77 659 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 LRRCC1Q9C099 1032 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 CWC22Q9HCG8 908 aaKnown RBP12.18□□□□□ -0.46
LMO3-227ENST00000541764 BRPF3Q9ULD4 1205 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 PLEKHG2Q9H7P9 1386 aa12.18□□□□□ -0.46
LMO3-227ENST00000541764 SPDYE1Q8NFV5 336 aaPredicted RBP12.17□□□□□ -0.46
LMO3-227ENST00000541764 USP44Q9H0E7 712 aa12.17□□□□□ -0.46
LMO3-227ENST00000541764 GOLGA6L3A6NEY3 463 aa12.16□□□□□ -0.46
LMO3-227ENST00000541764 ANAPC15P60006 121 aa12.16□□□□□ -0.46
LMO3-227ENST00000541764 HDGFL1Q5TGJ6 251 aa12.16□□□□□ -0.46
LMO3-227ENST00000541764 NBPF6Q5VWK0 638 aa12.16□□□□□ -0.46
LMO3-227ENST00000541764 ARHGEF25Q86VW2 580 aa12.16□□□□□ -0.46
LMO3-227ENST00000541764 NBPF4Q96M43 638 aa12.16□□□□□ -0.46
LMO3-227ENST00000541764 HEG1Q9ULI3 1381 aa12.16□□□□□ -0.46
LMO3-227ENST00000541764 NPHP4O75161 1426 aaPredicted RBP12.16□□□□□ -0.46
LMO3-227ENST00000541764 ST18O60284 1047 aa12.15□□□□□ -0.46
LMO3-227ENST00000541764 CYP2E1P05181 493 aaPredicted RBP12.15□□□□□ -0.46
LMO3-227ENST00000541764 NUCB2P80303 420 aa12.15□□□□□ -0.46
LMO3-227ENST00000541764 PLEKHO1Q53GL0 409 aaPredicted RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms