RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 CHPF2Q9P2E5 772 aa16.57■□□□□ 0.24
PTPN1-202ENST00000541713 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.57■□□□□ 0.24
PTPN1-202ENST00000541713 REC8O95072 547 aa16.57■□□□□ 0.24
PTPN1-202ENST00000541713 CWC27Q6UX04 472 aaKnown RBP16.57■□□□□ 0.24
PTPN1-202ENST00000541713 PPP1R42Q7Z4L9 355 aa16.57■□□□□ 0.24
PTPN1-202ENST00000541713 NSFL1CQ9UNZ2 370 aaKnown RBP16.57■□□□□ 0.24
PTPN1-202ENST00000541713 PA2G4Q9UQ80 394 aaKnown RBP16.57■□□□□ 0.24
PTPN1-202ENST00000541713 PTCH1Q13635 1447 aa16.57■□□□□ 0.24
PTPN1-202ENST00000541713 MED14O60244 1454 aa16.57■□□□□ 0.24
PTPN1-202ENST00000541713 ZC3H6P61129 1189 aaKnown RBP16.57■□□□□ 0.24
PTPN1-202ENST00000541713 TEFQ10587 303 aa16.57■□□□□ 0.24
PTPN1-202ENST00000541713 ATP7BP35670 1465 aa16.56■□□□□ 0.24
PTPN1-202ENST00000541713 HOXC9P31274 260 aa16.56■□□□□ 0.24
PTPN1-202ENST00000541713 PIK3R4Q99570 1358 aa16.56■□□□□ 0.24
PTPN1-202ENST00000541713 NASPP49321 788 aaPredicted RBP16.55■□□□□ 0.24
PTPN1-202ENST00000541713 HAP1P54257 671 aaPredicted RBP16.55■□□□□ 0.24
PTPN1-202ENST00000541713 RICTORQ6R327 1708 aa16.55■□□□□ 0.24
PTPN1-202ENST00000541713 ERBB4Q15303 1308 aa16.55■□□□□ 0.24
PTPN1-202ENST00000541713 CCT4P50991 539 aaKnown RBP16.55■□□□□ 0.24
PTPN1-202ENST00000541713 BRPF1P55201 1214 aaPredicted RBP16.55■□□□□ 0.24
PTPN1-202ENST00000541713 ANP32BQ92688 251 aaKnown RBP16.55■□□□□ 0.24
PTPN1-202ENST00000541713 NBPF6Q5VWK0 638 aa16.55■□□□□ 0.24
PTPN1-202ENST00000541713 DDX17Q92841 729 aaKnown RBP16.55■□□□□ 0.24
PTPN1-202ENST00000541713 NBPF4Q96M43 638 aa16.55■□□□□ 0.24
PTPN1-202ENST00000541713 SYCE3A1L190 88 aa16.54■□□□□ 0.24
PTPN1-202ENST00000541713 FSD2A1L4K1 749 aa16.54■□□□□ 0.24
PTPN1-202ENST00000541713 CWF19L2Q2TBE0 894 aaKnown RBP16.54■□□□□ 0.24
PTPN1-202ENST00000541713 ZNF530Q6P9A1 599 aaPredicted RBP16.54■□□□□ 0.24
PTPN1-202ENST00000541713 TMX3Q96JJ7 454 aa16.54■□□□□ 0.24
PTPN1-202ENST00000541713 USP32Q8NFA0 1604 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 PLEKHG3A1L390 1219 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 PRKCSHP14314 528 aaPredicted RBP16.53■□□□□ 0.24
PTPN1-202ENST00000541713 MYL6BP14649 208 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 TCEANC2Q96MN5 208 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 USP44Q9H0E7 712 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 PTPRCP08575 1304 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 SLC39A6Q13433 755 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 AATKQ6ZMQ8 1374 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 CDK12Q9NYV4 1490 aaPredicted RBP16.53■□□□□ 0.24
PTPN1-202ENST00000541713 KLHDC4Q8TBB5 520 aa16.53■□□□□ 0.24
PTPN1-202ENST00000541713 PPFIA3O75145 1194 aa16.52■□□□□ 0.24
PTPN1-202ENST00000541713 ORAI2Q96SN7 254 aa16.52■□□□□ 0.24
PTPN1-202ENST00000541713 C9orf78Q9NZ63 289 aaPredicted RBP16.52■□□□□ 0.24
PTPN1-202ENST00000541713 USP6P35125 1406 aa16.52■□□□□ 0.23
PTPN1-202ENST00000541713 KCNJ4P48050 445 aa16.51■□□□□ 0.23
PTPN1-202ENST00000541713 ATP10DQ9P241 1426 aa16.51■□□□□ 0.23
PTPN1-202ENST00000541713 GNAI3P08754 354 aa16.51■□□□□ 0.23
PTPN1-202ENST00000541713 DDIT3P35638 169 aa16.51■□□□□ 0.23
PTPN1-202ENST00000541713 ESPNB1AK53 854 aa16.51■□□□□ 0.23
PTPN1-202ENST00000541713 PRIM1P49642 420 aaKnown RBP16.51■□□□□ 0.23
PTPN1-202ENST00000541713 SRCIN1Q9C0H9 1055 aa16.51■□□□□ 0.23
PTPN1-202ENST00000541713 NDUFB9Q9Y6M9 179 aa16.51■□□□□ 0.23
PTPN1-202ENST00000541713 BTBD11A6QL63 1104 aa16.5■□□□□ 0.23
PTPN1-202ENST00000541713 PROSER3Q2NL68 480 aa16.5■□□□□ 0.23
PTPN1-202ENST00000541713 ESYT1Q9BSJ8 1104 aa16.5■□□□□ 0.23
PTPN1-202ENST00000541713 FLT4P35916 1363 aa16.5■□□□□ 0.23
PTPN1-202ENST00000541713 CIZ1Q9ULV3 898 aaPredicted RBP16.5■□□□□ 0.23
PTPN1-202ENST00000541713 ZDHHC9Q9Y397 364 aa16.49■□□□□ 0.23
PTPN1-202ENST00000541713 ZNF330Q9Y3S2 320 aaPredicted RBP16.49■□□□□ 0.23
PTPN1-202ENST00000541713 PTPRUQ92729 1446 aa16.49■□□□□ 0.23
PTPN1-202ENST00000541713 CHMLP26374 656 aa16.49■□□□□ 0.23
PTPN1-202ENST00000541713 CCDC8Q9H0W5 538 aaPredicted RBP16.49■□□□□ 0.23
PTPN1-202ENST00000541713 PHF8Q9UPP1 1060 aa16.49■□□□□ 0.23
PTPN1-202ENST00000541713 SOS1Q07889 1333 aaPredicted RBP16.48■□□□□ 0.23
PTPN1-202ENST00000541713 MCCP23508 829 aa16.48■□□□□ 0.23
PTPN1-202ENST00000541713 ATP8B2P98198 1209 aa16.48■□□□□ 0.23
PTPN1-202ENST00000541713 ZSCAN23Q3MJ62 389 aa16.48■□□□□ 0.23
PTPN1-202ENST00000541713 RGS12O14924 1447 aa16.48■□□□□ 0.23
PTPN1-202ENST00000541713 FOSBP53539 338 aa16.48■□□□□ 0.23
PTPN1-202ENST00000541713 NUCB2P80303 420 aa16.48■□□□□ 0.23
PTPN1-202ENST00000541713 THEMISQ8N1K5 641 aaPredicted RBP16.48■□□□□ 0.23
PTPN1-202ENST00000541713 PPP6R1Q9UPN7 881 aa16.48■□□□□ 0.23
PTPN1-202ENST00000541713 CABLES1Q8TDN4 633 aa16.47■□□□□ 0.23
PTPN1-202ENST00000541713 RBSNQ9H1K0 784 aa16.47■□□□□ 0.23
PTPN1-202ENST00000541713 RIMS1Q86UR5 1692 aaKnown RBP16.47■□□□□ 0.23
PTPN1-202ENST00000541713 SKOR2Q2VWA4 1001 aaPredicted RBP16.47■□□□□ 0.23
PTPN1-202ENST00000541713 GPT2Q8TD30 523 aa16.47■□□□□ 0.23
PTPN1-202ENST00000541713 CRB1P82279 1406 aa16.47■□□□□ 0.23
PTPN1-202ENST00000541713 DLC1Q96QB1 1528 aa16.47■□□□□ 0.23
PTPN1-202ENST00000541713 LMBRD1Q9NUN5 540 aa16.47■□□□□ 0.23
PTPN1-202ENST00000541713 ADAMTS13Q76LX8 1427 aa16.46■□□□□ 0.23
PTPN1-202ENST00000541713 KIAA1211Q6ZU35 1233 aa16.46■□□□□ 0.23
PTPN1-202ENST00000541713 KIF20BQ96Q89 1820 aa16.46■□□□□ 0.23
PTPN1-202ENST00000541713 RHPN1Q8TCX5 695 aa16.46■□□□□ 0.23
PTPN1-202ENST00000541713 VIRMAQ69YN4 1812 aaKnown RBP16.46■□□□□ 0.22
PTPN1-202ENST00000541713 GADD45BO75293 160 aaPredicted RBP16.46■□□□□ 0.22
PTPN1-202ENST00000541713 NLRP2Q9NX02 1062 aa16.46■□□□□ 0.22
PTPN1-202ENST00000541713 PTMAP06454 111 aaKnown RBP16.45■□□□□ 0.22
PTPN1-202ENST00000541713 CSB-PGBD3P0DP91 1061 aa16.45■□□□□ 0.22
PTPN1-202ENST00000541713 MAP3K2Q9Y2U5 619 aa16.45■□□□□ 0.22
PTPN1-202ENST00000541713 FIBPO43427 364 aa16.45■□□□□ 0.22
PTPN1-202ENST00000541713 TMEM63CQ9P1W3 806 aa16.45■□□□□ 0.22
PTPN1-202ENST00000541713 C1orf141Q5JVX7 400 aa16.44■□□□□ 0.22
PTPN1-202ENST00000541713 FERMT3Q86UX7 667 aa16.44■□□□□ 0.22
PTPN1-202ENST00000541713 EDC3Q96F86 508 aaKnown RBP16.44■□□□□ 0.22
PTPN1-202ENST00000541713 CEP170BQ9Y4F5 1589 aaPredicted RBP16.44■□□□□ 0.22
PTPN1-202ENST00000541713 RASEFQ8IZ41 740 aa16.44■□□□□ 0.22
PTPN1-202ENST00000541713 NECAB1Q8N987 351 aa16.44■□□□□ 0.22
PTPN1-202ENST00000541713 DNAAF4Q8WXU2 420 aa16.44■□□□□ 0.22
PTPN1-202ENST00000541713 BCL11BQ9C0K0 894 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms