RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 COG3Q96JB2 828 aa13.28□□□□□ -0.28
CHFR-219ENST00000541341 MAP3K19Q56UN5 1328 aa13.28□□□□□ -0.28
CHFR-219ENST00000541341 GPR162Q16538 588 aa13.27□□□□□ -0.29
CHFR-219ENST00000541341 TOGARAM1Q9Y4F4 1720 aa13.27□□□□□ -0.29
CHFR-219ENST00000541341 GOLGA2Q08379 1002 aa13.26□□□□□ -0.29
CHFR-219ENST00000541341 CGNL1Q0VF96 1302 aa13.26□□□□□ -0.29
CHFR-219ENST00000541341 NFKBIBQ15653 356 aa13.26□□□□□ -0.29
CHFR-219ENST00000541341 AMER1Q5JTC6 1135 aaPredicted RBP13.26□□□□□ -0.29
CHFR-219ENST00000541341 PNPLA7Q6ZV29 1317 aa13.26□□□□□ -0.29
CHFR-219ENST00000541341 KDM2BQ8NHM5 1336 aa13.26□□□□□ -0.29
CHFR-219ENST00000541341 AKT1S1Q96B36 256 aa13.26□□□□□ -0.29
CHFR-219ENST00000541341 GGNBP2Q9H3C7 697 aa13.26□□□□□ -0.29
CHFR-219ENST00000541341 UPF2Q9HAU5 1272 aaKnown RBP13.26□□□□□ -0.29
CHFR-219ENST00000541341 TFCP2L1Q9NZI6 479 aa13.26□□□□□ -0.29
CHFR-219ENST00000541341 NLGN2Q8NFZ4 835 aa13.25□□□□□ -0.29
CHFR-219ENST00000541341 KNSTRNQ9Y448 316 aa13.25□□□□□ -0.29
CHFR-219ENST00000541341 FYB1O15117 783 aa13.24□□□□□ -0.29
CHFR-219ENST00000541341 GLIPR1L2Q4G1C9 344 aa13.24□□□□□ -0.29
CHFR-219ENST00000541341 NCBP3Q53F19 620 aaKnown RBP13.24□□□□□ -0.29
CHFR-219ENST00000541341 NBPF6Q5VWK0 638 aa13.24□□□□□ -0.29
CHFR-219ENST00000541341 MSL1Q68DK7 614 aa13.24□□□□□ -0.29
CHFR-219ENST00000541341 ZCRB1Q8TBF4 217 aaKnown RBP13.24□□□□□ -0.29
CHFR-219ENST00000541341 NBPF4Q96M43 638 aa13.24□□□□□ -0.29
CHFR-219ENST00000541341 EIF5BO60841 1220 aaKnown RBP13.23□□□□□ -0.29
CHFR-219ENST00000541341 PRKCSHP14314 528 aaPredicted RBP13.23□□□□□ -0.29
CHFR-219ENST00000541341 CCNL1Q9UK58 526 aaPredicted RBP13.23□□□□□ -0.29
CHFR-219ENST00000541341 ISY1Q9ULR0 285 aaKnown RBP13.23□□□□□ -0.29
CHFR-219ENST00000541341 LAS1LQ9Y4W2 734 aaKnown RBP13.23□□□□□ -0.29
CHFR-219ENST00000541341 POLD1P28340 1107 aa13.22□□□□□ -0.29
CHFR-219ENST00000541341 PDE3AQ14432 1141 aa13.22□□□□□ -0.29
CHFR-219ENST00000541341 CRBNQ96SW2 442 aa13.22□□□□□ -0.29
CHFR-219ENST00000541341 UBR3Q6ZT12 1888 aa13.21□□□□□ -0.29
CHFR-219ENST00000541341 SENP3-EIF4A1A0A087X0R7 540 aa13.21□□□□□ -0.29
CHFR-219ENST00000541341 SLC27A3Q5K4L6 730 aa13.21□□□□□ -0.29
CHFR-219ENST00000541341 WWC3Q9ULE0 1092 aa13.21□□□□□ -0.29
CHFR-219ENST00000541341 C4BP0C0L5 1744 aa13.2□□□□□ -0.3
CHFR-219ENST00000541341 E9PSI1 815 aa13.2□□□□□ -0.3
CHFR-219ENST00000541341 PTMSP20962 102 aa13.2□□□□□ -0.3
CHFR-219ENST00000541341 HSP90AB2PQ58FF8 381 aa13.2□□□□□ -0.3
CHFR-219ENST00000541341 SMIM5Q71RC9 77 aa13.2□□□□□ -0.3
CHFR-219ENST00000541341 COL23A1Q86Y22 540 aaPredicted RBP13.2□□□□□ -0.3
CHFR-219ENST00000541341 PKD1L3Q7Z443 1732 aa13.19□□□□□ -0.3
CHFR-219ENST00000541341 MPRIPQ6WCQ1 1025 aa13.18□□□□□ -0.3
CHFR-219ENST00000541341 RAPGEF4Q8WZA2 1011 aa13.18□□□□□ -0.3
CHFR-219ENST00000541341 MAP3K5Q99683 1374 aa13.18□□□□□ -0.3
CHFR-219ENST00000541341 YBX3P16989 372 aaKnown RBP eCLIP13.17□□□□□ -0.3
CHFR-219ENST00000541341 TATP17735 454 aaPredicted RBP13.17□□□□□ -0.3
CHFR-219ENST00000541341 SLC16A10Q8TF71 515 aa13.17□□□□□ -0.3
CHFR-219ENST00000541341 UBE2Q2Q8WVN8 375 aa13.17□□□□□ -0.3
CHFR-219ENST00000541341 RTL1A6NKG5 1358 aa13.17□□□□□ -0.3
CHFR-219ENST00000541341 C1QTNF8P60827 252 aa13.16□□□□□ -0.3
CHFR-219ENST00000541341 EMILIN1Q9Y6C2 1016 aa13.16□□□□□ -0.3
CHFR-219ENST00000541341 KIF24Q5T7B8 1368 aa13.16□□□□□ -0.3
CHFR-219ENST00000541341 ZNF521Q96K83 1311 aa13.15□□□□□ -0.3
CHFR-219ENST00000541341 N4BP2Q86UW6 1770 aaPredicted RBP13.15□□□□□ -0.3
CHFR-219ENST00000541341 PHF14O94880 888 aa13.15□□□□□ -0.3
CHFR-219ENST00000541341 SLFN5Q08AF3 891 aa13.15□□□□□ -0.3
CHFR-219ENST00000541341 CC2D1BQ5T0F9 858 aaKnown RBP13.15□□□□□ -0.3
CHFR-219ENST00000541341 DUSP27Q5VZP5 1158 aa13.15□□□□□ -0.3
CHFR-219ENST00000541341 TRMT2AQ8IZ69 625 aaKnown RBP13.15□□□□□ -0.3
CHFR-219ENST00000541341 MORC1Q86VD1 984 aa13.14□□□□□ -0.31
CHFR-219ENST00000541341 AMIGO3Q86WK7 504 aa13.14□□□□□ -0.31
CHFR-219ENST00000541341 IL27Q8NEV9 243 aa13.14□□□□□ -0.31
CHFR-219ENST00000541341 PALLDQ8WX93 1383 aa13.14□□□□□ -0.31
CHFR-219ENST00000541341 PCDH11XQ9BZA7 1347 aa13.13□□□□□ -0.31
CHFR-219ENST00000541341 PCDH11YQ9BZA8 1340 aa13.13□□□□□ -0.31
CHFR-219ENST00000541341 FLT4P35916 1363 aa13.13□□□□□ -0.31
CHFR-219ENST00000541341 CYP27B1O15528 508 aa13.13□□□□□ -0.31
CHFR-219ENST00000541341 GIGYF1O75420 1035 aaPredicted RBP13.13□□□□□ -0.31
CHFR-219ENST00000541341 C8orf34Q49A92 452 aa13.13□□□□□ -0.31
CHFR-219ENST00000541341 FRAT1Q92837 279 aaPredicted RBP13.13□□□□□ -0.31
CHFR-219ENST00000541341 PPP2R1AP30153 589 aa13.12□□□□□ -0.31
CHFR-219ENST00000541341 ZNF526Q8TF50 670 aaPredicted RBP13.12□□□□□ -0.31
CHFR-219ENST00000541341 CDCA7LQ96GN5 454 aa13.12□□□□□ -0.31
CHFR-219ENST00000541341 COL3A1P02461 1466 aaPredicted RBP13.11□□□□□ -0.31
CHFR-219ENST00000541341 CT47B1P0C2W7 299 aaPredicted RBP13.11□□□□□ -0.31
CHFR-219ENST00000541341 TNNT2P45379 298 aaPredicted RBP13.11□□□□□ -0.31
CHFR-219ENST00000541341 ADAMTS8Q9UP79 889 aa13.11□□□□□ -0.31
CHFR-219ENST00000541341 CNGB1Q14028 1251 aaPredicted RBP13.1□□□□□ -0.31
CHFR-219ENST00000541341 AK7Q96M32 723 aa13.1□□□□□ -0.31
CHFR-219ENST00000541341 PIGBQ92521 554 aa13.09□□□□□ -0.31
CHFR-219ENST00000541341 CFAP44Q96MT7 982 aa13.09□□□□□ -0.31
CHFR-219ENST00000541341 POLKQ9UBT6 870 aa13.09□□□□□ -0.31
CHFR-219ENST00000541341 SALL2Q9Y467 1007 aaPredicted RBP13.09□□□□□ -0.31
CHFR-219ENST00000541341 ATP10DQ9P241 1426 aa13.08□□□□□ -0.32
CHFR-219ENST00000541341 RWDD1Q9H446 243 aaPredicted RBP13.08□□□□□ -0.32
CHFR-219ENST00000541341 COL5A3P25940 1745 aaPredicted RBP13.08□□□□□ -0.32
CHFR-219ENST00000541341 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.07□□□□□ -0.32
CHFR-219ENST00000541341 CANXP27824 592 aaKnown RBP13.07□□□□□ -0.32
CHFR-219ENST00000541341 LINC00116Q8NCU8 138 aa13.07□□□□□ -0.32
CHFR-219ENST00000541341 CHMP4BQ9H444 224 aaKnown RBP13.07□□□□□ -0.32
CHFR-219ENST00000541341 C4AP0C0L4 1744 aa13.07□□□□□ -0.32
CHFR-219ENST00000541341 KIAA1551Q9HCM1 1747 aa13.07□□□□□ -0.32
CHFR-219ENST00000541341 CEP350Q5VT06 3117 aa13.06□□□□□ -0.32
CHFR-219ENST00000541341 PLIN1O60240 522 aa13.06□□□□□ -0.32
CHFR-219ENST00000541341 GRIN3BO60391 1043 aa13.06□□□□□ -0.32
CHFR-219ENST00000541341 CLUAP1Q96AJ1 413 aa13.06□□□□□ -0.32
CHFR-219ENST00000541341 EYA1Q99502 592 aa13.06□□□□□ -0.32
CHFR-219ENST00000541341 ASAP1Q9ULH1 1129 aa13.06□□□□□ -0.32
CHFR-219ENST00000541341 MYH14Q7Z406 1995 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms