RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 OVOS2A0A0G2JMS6 1433 aa15.63■□□□□ 0.09
AP003559.1-201ENST00000540906 SLC4A2P04920 1241 aa15.63■□□□□ 0.09
AP003559.1-201ENST00000540906 TOM1L2Q6ZVM7 507 aa15.63■□□□□ 0.09
AP003559.1-201ENST00000540906 ZBTB40Q9NUA8 1239 aa15.63■□□□□ 0.09
AP003559.1-201ENST00000540906 SHANK3Q9BYB0 1731 aa15.63■□□□□ 0.09
AP003559.1-201ENST00000540906 TEFQ10587 303 aa15.62■□□□□ 0.09
AP003559.1-201ENST00000540906 PARP4Q9UKK3 1724 aaKnown RBP15.62■□□□□ 0.09
AP003559.1-201ENST00000540906 BTBD11A6QL63 1104 aa15.61■□□□□ 0.09
AP003559.1-201ENST00000540906 ZBTB7BO15156 539 aaPredicted RBP15.61■□□□□ 0.09
AP003559.1-201ENST00000540906 API5Q9BZZ5 524 aaKnown RBP15.61■□□□□ 0.09
AP003559.1-201ENST00000540906 SPG7Q9UQ90 795 aa15.61■□□□□ 0.09
AP003559.1-201ENST00000540906 RBM19Q9Y4C8 960 aaKnown RBP15.61■□□□□ 0.09
AP003559.1-201ENST00000540906 PRAMEF22A3QJZ6 481 aa15.6■□□□□ 0.09
AP003559.1-201ENST00000540906 C1orf115Q9H7X2 142 aa15.6■□□□□ 0.09
AP003559.1-201ENST00000540906 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.6■□□□□ 0.09
AP003559.1-201ENST00000540906 AAMPQ13685 434 aa15.59■□□□□ 0.09
AP003559.1-201ENST00000540906 CARD10Q9BWT7 1032 aa15.59■□□□□ 0.09
AP003559.1-201ENST00000540906 COL14A1Q05707 1796 aaKnown RBP15.59■□□□□ 0.09
AP003559.1-201ENST00000540906 MRC1P22897 1456 aa15.59■□□□□ 0.09
AP003559.1-201ENST00000540906 F6X3S4 739 aa15.59■□□□□ 0.09
AP003559.1-201ENST00000540906 BTG4Q9NY30 223 aa15.59■□□□□ 0.09
AP003559.1-201ENST00000540906 HEG1Q9ULI3 1381 aa15.58■□□□□ 0.08
AP003559.1-201ENST00000540906 SLC39A6Q13433 755 aa15.58■□□□□ 0.08
AP003559.1-201ENST00000540906 IFNL2Q8IZJ0 200 aa15.58■□□□□ 0.08
AP003559.1-201ENST00000540906 FBXO41Q8TF61 875 aa15.58■□□□□ 0.08
AP003559.1-201ENST00000540906 C5P01031 1676 aa15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 EIF2S2P20042 333 aaKnown RBP15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 EVA1CP58658 441 aa15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 HDGFL1Q5TGJ6 251 aa15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 CCDC30Q5VVM6 783 aa15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 INTS3Q68E01 1043 aaKnown RBP15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 NFATC2IPQ8NCF5 419 aa15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 PHAXQ9H814 394 aaKnown RBP15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 SLC52A2Q9HAB3 445 aa15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 USP35Q9P2H5 1018 aa15.57■□□□□ 0.08
AP003559.1-201ENST00000540906 PTPRCP08575 1304 aa15.56■□□□□ 0.08
AP003559.1-201ENST00000540906 PLEKHG2Q9H7P9 1386 aa15.56■□□□□ 0.08
AP003559.1-201ENST00000540906 ANXA1P04083 346 aa15.56■□□□□ 0.08
AP003559.1-201ENST00000540906 RGS3P49796 1198 aa15.56■□□□□ 0.08
AP003559.1-201ENST00000540906 FLIIQ13045 1269 aa15.56■□□□□ 0.08
AP003559.1-201ENST00000540906 PLCH1Q4KWH8 1693 aa15.55■□□□□ 0.08
AP003559.1-201ENST00000540906 IL2RBP14784 551 aa15.55■□□□□ 0.08
AP003559.1-201ENST00000540906 STK31Q9BXU1 1019 aa15.55■□□□□ 0.08
AP003559.1-201ENST00000540906 GLI3P10071 1580 aa15.55■□□□□ 0.08
AP003559.1-201ENST00000540906 NUTM2BA6NNL0 878 aaPredicted RBP15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 NUTM2EB1AL46 878 aaPredicted RBP15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 NUTM2AQ8IVF1 878 aaPredicted RBP15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 SIRT2Q8IXJ6 389 aa15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 ZCRB1Q8TBF4 217 aaKnown RBP15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 CHPF2Q9P2E5 772 aa15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 PDZRN3Q9UPQ7 1066 aa15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 SOS1Q07889 1333 aaPredicted RBP15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 CACNA1FO60840 1977 aa15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 TOGARAM1Q9Y4F4 1720 aa15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 GIGYF1O75420 1035 aaPredicted RBP15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 HDAC1Q13547 482 aaPredicted RBP15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 DCAF5Q96JK2 942 aa15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 RWDD1Q9H446 243 aaPredicted RBP15.54■□□□□ 0.08
AP003559.1-201ENST00000540906 ADAMTS2O95450 1211 aa15.53■□□□□ 0.08
AP003559.1-201ENST00000540906 PROSER3Q2NL68 480 aa15.53■□□□□ 0.08
AP003559.1-201ENST00000540906 NRAPQ86VF7 1730 aa15.53■□□□□ 0.08
AP003559.1-201ENST00000540906 SLC4A10Q6U841 1118 aa15.52■□□□□ 0.08
AP003559.1-201ENST00000540906 MEIS3Q99687 375 aa15.52■□□□□ 0.08
AP003559.1-201ENST00000540906 DISP2A7MBM2 1401 aa15.52■□□□□ 0.08
AP003559.1-201ENST00000540906 N4BP2Q86UW6 1770 aaPredicted RBP15.52■□□□□ 0.07
AP003559.1-201ENST00000540906 HOXB7P09629 217 aa15.52■□□□□ 0.07
AP003559.1-201ENST00000540906 FKBP5Q13451 457 aaPredicted RBP15.52■□□□□ 0.07
AP003559.1-201ENST00000540906 ZNF790Q6PG37 636 aa15.52■□□□□ 0.07
AP003559.1-201ENST00000540906 PCDH11XQ9BZA7 1347 aa15.52■□□□□ 0.07
AP003559.1-201ENST00000540906 PCDH11YQ9BZA8 1340 aa15.52■□□□□ 0.07
AP003559.1-201ENST00000540906 DDX54Q8TDD1 881 aaKnown RBP15.51■□□□□ 0.07
AP003559.1-201ENST00000540906 ATP10DQ9P241 1426 aa15.51■□□□□ 0.07
AP003559.1-201ENST00000540906 ZNF496Q96IT1 587 aaPredicted RBP15.5■□□□□ 0.07
AP003559.1-201ENST00000540906 WNK3Q9BYP7 1800 aa15.5■□□□□ 0.07
AP003559.1-201ENST00000540906 PDE4AP27815 886 aa15.5■□□□□ 0.07
AP003559.1-201ENST00000540906 SMC5Q8IY18 1101 aa15.5■□□□□ 0.07
AP003559.1-201ENST00000540906 HSP90AB1P08238 724 aaKnown RBP15.49■□□□□ 0.07
AP003559.1-201ENST00000540906 CABP4P57796 275 aa15.49■□□□□ 0.07
AP003559.1-201ENST00000540906 NKX1-1Q15270 411 aaPredicted RBP15.49■□□□□ 0.07
AP003559.1-201ENST00000540906 ILDR1Q86SU0 546 aaPredicted RBP15.49■□□□□ 0.07
AP003559.1-201ENST00000540906 PAPPAQ13219 1627 aa15.49■□□□□ 0.07
AP003559.1-201ENST00000540906 PDIA6Q15084 440 aa15.48■□□□□ 0.07
AP003559.1-201ENST00000540906 ADCY9O60503 1353 aa15.48■□□□□ 0.07
AP003559.1-201ENST00000540906 BACH2Q9BYV9 841 aa15.47■□□□□ 0.07
AP003559.1-201ENST00000540906 JCADQ9P266 1359 aa15.47■□□□□ 0.07
AP003559.1-201ENST00000540906 UBR2Q8IWV8 1755 aa15.47■□□□□ 0.07
AP003559.1-201ENST00000540906 KCPQ6ZWJ8 1503 aa15.46■□□□□ 0.07
AP003559.1-201ENST00000540906 CCT4P50991 539 aaKnown RBP15.46■□□□□ 0.07
AP003559.1-201ENST00000540906 USP16Q9Y5T5 823 aa15.46■□□□□ 0.07
AP003559.1-201ENST00000540906 PXDNLA1KZ92 1463 aa15.45■□□□□ 0.06
AP003559.1-201ENST00000540906 PIP4K2AP48426 406 aaPredicted RBP15.45■□□□□ 0.06
AP003559.1-201ENST00000540906 C8orf34Q49A92 452 aa15.45■□□□□ 0.06
AP003559.1-201ENST00000540906 CEP85Q6P2H3 762 aa15.45■□□□□ 0.06
AP003559.1-201ENST00000540906 PI4KAP2A4QPH2 592 aa15.44■□□□□ 0.06
AP003559.1-201ENST00000540906 ANKRD44Q8N8A2 993 aa15.44■□□□□ 0.06
AP003559.1-201ENST00000540906 PI4KAP1Q8N8J0 262 aa15.44■□□□□ 0.06
AP003559.1-201ENST00000540906 CHMP4BQ9H444 224 aaKnown RBP15.44■□□□□ 0.06
AP003559.1-201ENST00000540906 DBF4Q9UBU7 674 aaPredicted RBP15.44■□□□□ 0.06
AP003559.1-201ENST00000540906 SLIT2O94813 1529 aa15.44■□□□□ 0.06
AP003559.1-201ENST00000540906 LAMB4A4D0S4 1761 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms