RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 ATG3Q9NT62 314 aa12.3□□□□□ -0.44
SNHG1-215ENST00000540904 RNMTO43148 476 aaKnown RBP12.29□□□□□ -0.44
SNHG1-215ENST00000540904 ZNF827Q17R98 1081 aa12.29□□□□□ -0.44
SNHG1-215ENST00000540904 LOC102724428A0A0B4J2F2 783 aa12.28□□□□□ -0.44
SNHG1-215ENST00000540904 GNAT3A8MTJ3 354 aa12.28□□□□□ -0.44
SNHG1-215ENST00000540904 SIK1P57059 783 aa12.28□□□□□ -0.44
SNHG1-215ENST00000540904 PDGFDQ9GZP0 370 aaPredicted RBP12.28□□□□□ -0.44
SNHG1-215ENST00000540904 MAP3K5Q99683 1374 aa12.28□□□□□ -0.44
SNHG1-215ENST00000540904 NEFMP07197 916 aa12.27□□□□□ -0.45
SNHG1-215ENST00000540904 AKT1S1Q96B36 256 aa12.27□□□□□ -0.45
SNHG1-215ENST00000540904 RBM42Q9BTD8 480 aaKnown RBP12.27□□□□□ -0.45
SNHG1-215ENST00000540904 SLC52A2Q9HAB3 445 aa12.27□□□□□ -0.45
SNHG1-215ENST00000540904 TFCP2L1Q9NZI6 479 aa12.27□□□□□ -0.45
SNHG1-215ENST00000540904 ITGB4P16144 1822 aa12.27□□□□□ -0.45
SNHG1-215ENST00000540904 PTCD1O75127 700 aaKnown RBP12.26□□□□□ -0.45
SNHG1-215ENST00000540904 ATP6V1AP38606 617 aa12.26□□□□□ -0.45
SNHG1-215ENST00000540904 PAPPAQ13219 1627 aa12.26□□□□□ -0.45
SNHG1-215ENST00000540904 LY75O60449 1722 aa12.25□□□□□ -0.45
SNHG1-215ENST00000540904 ZBTB7AO95365 584 aa12.25□□□□□ -0.45
SNHG1-215ENST00000540904 IL17REQ8NFR9 667 aa12.25□□□□□ -0.45
SNHG1-215ENST00000540904 RTF1Q92541 710 aaKnown RBP12.25□□□□□ -0.45
SNHG1-215ENST00000540904 PLEKHF1Q96S99 279 aa12.25□□□□□ -0.45
SNHG1-215ENST00000540904 PNNQ9H307 717 aaKnown RBP12.25□□□□□ -0.45
SNHG1-215ENST00000540904 ANP32CO43423 234 aa12.24□□□□□ -0.45
SNHG1-215ENST00000540904 HMGB2P26583 209 aaKnown RBP12.24□□□□□ -0.45
SNHG1-215ENST00000540904 TEFQ10587 303 aa12.24□□□□□ -0.45
SNHG1-215ENST00000540904 SLC39A6Q13433 755 aa12.24□□□□□ -0.45
SNHG1-215ENST00000540904 ITPK1Q13572 414 aa12.24□□□□□ -0.45
SNHG1-215ENST00000540904 WDR43Q15061 677 aaKnown RBP eCLIP12.24□□□□□ -0.45
SNHG1-215ENST00000540904 LINC00116Q8NCU8 138 aa12.24□□□□□ -0.45
SNHG1-215ENST00000540904 MAPK8IP3Q9UPT6 1336 aa12.24□□□□□ -0.45
SNHG1-215ENST00000540904 PNPLA7Q6ZV29 1317 aa12.23□□□□□ -0.45
SNHG1-215ENST00000540904 MCM10Q7L590 875 aa12.23□□□□□ -0.45
SNHG1-215ENST00000540904 AK7Q96M32 723 aa12.23□□□□□ -0.45
SNHG1-215ENST00000540904 SLC4A9Q96Q91 983 aa12.23□□□□□ -0.45
SNHG1-215ENST00000540904 SPON1Q9HCB6 807 aa12.23□□□□□ -0.45
SNHG1-215ENST00000540904 MRC1P22897 1456 aa12.22□□□□□ -0.45
SNHG1-215ENST00000540904 DCTN1Q14203 1278 aa12.22□□□□□ -0.45
SNHG1-215ENST00000540904 ATF5Q9Y2D1 282 aaPredicted RBP12.22□□□□□ -0.45
SNHG1-215ENST00000540904 SRCAPQ6ZRS2 3230 aa12.21□□□□□ -0.45
SNHG1-215ENST00000540904 CEMIPQ8WUJ3 1361 aa12.21□□□□□ -0.45
SNHG1-215ENST00000540904 SCN11AQ9UI33 1791 aa12.21□□□□□ -0.45
SNHG1-215ENST00000540904 PHF14O94880 888 aa12.21□□□□□ -0.45
SNHG1-215ENST00000540904 NFE2L2Q16236 605 aa12.21□□□□□ -0.45
SNHG1-215ENST00000540904 SMIM5Q71RC9 77 aa12.21□□□□□ -0.45
SNHG1-215ENST00000540904 CCDC146Q8IYE0 955 aa12.21□□□□□ -0.45
SNHG1-215ENST00000540904 ADAMTS8Q9UP79 889 aa12.21□□□□□ -0.45
SNHG1-215ENST00000540904 GNPATO15228 680 aa12.2□□□□□ -0.46
SNHG1-215ENST00000540904 HTATSF1O43719 755 aaKnown RBP12.2□□□□□ -0.46
SNHG1-215ENST00000540904 COL23A1Q86Y22 540 aaPredicted RBP12.2□□□□□ -0.46
SNHG1-215ENST00000540904 TTC5Q8N0Z6 440 aa12.2□□□□□ -0.46
SNHG1-215ENST00000540904 MTFR1LQ9H019 292 aa12.2□□□□□ -0.46
SNHG1-215ENST00000540904 C5P01031 1676 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 ADAMTS7Q9UKP4 1686 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.19□□□□□ -0.46
SNHG1-215ENST00000540904 BTBD11A6QL63 1104 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 CCDC184Q52MB2 194 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 ZNF790Q6PG37 636 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 AMIGO3Q86WK7 504 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 FLAD1Q8NFF5 587 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 PPP1R1BQ9UD71 204 aaPredicted RBP12.19□□□□□ -0.46
SNHG1-215ENST00000540904 CASZ1Q86V15 1759 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 LRP5O75197 1615 aa12.19□□□□□ -0.46
SNHG1-215ENST00000540904 C4BP0C0L5 1744 aa12.18□□□□□ -0.46
SNHG1-215ENST00000540904 PTGER2P43116 358 aa12.18□□□□□ -0.46
SNHG1-215ENST00000540904 RIPK4P57078 832 aa12.18□□□□□ -0.46
SNHG1-215ENST00000540904 DNAJC10Q8IXB1 793 aa12.18□□□□□ -0.46
SNHG1-215ENST00000540904 SLC16A10Q8TF71 515 aa12.18□□□□□ -0.46
SNHG1-215ENST00000540904 RUNDC1Q96C34 613 aa12.18□□□□□ -0.46
SNHG1-215ENST00000540904 THUMPD2Q9BTF0 503 aaKnown RBP12.18□□□□□ -0.46
SNHG1-215ENST00000540904 RRP7AQ9Y3A4 280 aaKnown RBP12.18□□□□□ -0.46
SNHG1-215ENST00000540904 CNTNAP4Q9C0A0 1308 aa12.17□□□□□ -0.46
SNHG1-215ENST00000540904 KCNQ3O43525 872 aa12.17□□□□□ -0.46
SNHG1-215ENST00000540904 SSFA2P28290 1259 aa12.17□□□□□ -0.46
SNHG1-215ENST00000540904 TMPOP42166 694 aaKnown RBP12.17□□□□□ -0.46
SNHG1-215ENST00000540904 CRKLP46109 303 aaKnown RBP12.17□□□□□ -0.46
SNHG1-215ENST00000540904 TAF7Q15545 349 aaPredicted RBP12.17□□□□□ -0.46
SNHG1-215ENST00000540904 NEUROD2Q15784 382 aa12.17□□□□□ -0.46
SNHG1-215ENST00000540904 RC3H1Q5TC82 1133 aaKnown RBP12.17□□□□□ -0.46
SNHG1-215ENST00000540904 ZNF496Q96IT1 587 aaPredicted RBP12.17□□□□□ -0.46
SNHG1-215ENST00000540904 RTCBQ9Y3I0 505 aaKnown RBP12.17□□□□□ -0.46
SNHG1-215ENST00000540904 U3KPZ7 1027 aaPredicted RBP12.17□□□□□ -0.46
SNHG1-215ENST00000540904 KCPQ6ZWJ8 1503 aa12.16□□□□□ -0.46
SNHG1-215ENST00000540904 MSL1Q68DK7 614 aa12.16□□□□□ -0.46
SNHG1-215ENST00000540904 FMNL2Q96PY5 1086 aa12.16□□□□□ -0.46
SNHG1-215ENST00000540904 MRS2Q9HD23 443 aa12.16□□□□□ -0.46
SNHG1-215ENST00000540904 CYP19A1P11511 503 aaPredicted RBP12.15□□□□□ -0.46
SNHG1-215ENST00000540904 TRAPPC3LQ5T215 181 aa12.15□□□□□ -0.46
SNHG1-215ENST00000540904 VSIG10Q8N0Z9 540 aa12.15□□□□□ -0.46
SNHG1-215ENST00000540904 SGIP1Q9BQI5 828 aa12.15□□□□□ -0.46
SNHG1-215ENST00000540904 MIS18AQ9NYP9 233 aa12.15□□□□□ -0.46
SNHG1-215ENST00000540904 TAF1LQ8IZX4 1826 aa12.15□□□□□ -0.46
SNHG1-215ENST00000540904 TUBGCP6Q96RT7 1819 aa12.14□□□□□ -0.47
SNHG1-215ENST00000540904 RPS6KA4O75676 772 aa12.14□□□□□ -0.47
SNHG1-215ENST00000540904 STARD3NLO95772 234 aa12.14□□□□□ -0.47
SNHG1-215ENST00000540904 POLD1P28340 1107 aa12.14□□□□□ -0.47
SNHG1-215ENST00000540904 LMOD3Q0VAK6 560 aa12.14□□□□□ -0.47
SNHG1-215ENST00000540904 INTS5Q6P9B9 1019 aaKnown RBP12.14□□□□□ -0.47
SNHG1-215ENST00000540904 CCDC87Q9NVE4 849 aa12.14□□□□□ -0.47
SNHG1-215ENST00000540904 HEG1Q9ULI3 1381 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms