RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 GAS2L2Q8NHY3 880 aa22.58■■□□□ 1.21
CD9-209ENST00000540891 PRKRIP1Q9H875 184 aaPredicted RBP22.58■■□□□ 1.21
CD9-209ENST00000540891 TAF1LQ8IZX4 1826 aa22.57■■□□□ 1.2
CD9-209ENST00000540891 TUBGCP6Q96RT7 1819 aa22.57■■□□□ 1.2
CD9-209ENST00000540891 MAP3K5Q99683 1374 aa22.56■■□□□ 1.2
CD9-209ENST00000540891 SLC4A9Q96Q91 983 aa22.56■■□□□ 1.2
CD9-209ENST00000540891 SLC52A2Q9HAB3 445 aa22.56■■□□□ 1.2
CD9-209ENST00000540891 QSER1Q2KHR3 1735 aa22.56■■□□□ 1.2
CD9-209ENST00000540891 VIRMAQ69YN4 1812 aaKnown RBP22.55■■□□□ 1.2
CD9-209ENST00000540891 ITPK1Q13572 414 aa22.55■■□□□ 1.2
CD9-209ENST00000540891 PNPLA7Q6ZV29 1317 aa22.55■■□□□ 1.2
CD9-209ENST00000540891 GNAT3A8MTJ3 354 aa22.54■■□□□ 1.2
CD9-209ENST00000540891 C4BP0C0L5 1744 aa22.54■■□□□ 1.2
CD9-209ENST00000540891 ZBTB7AO95365 584 aa22.53■■□□□ 1.2
CD9-209ENST00000540891 LINC00116Q8NCU8 138 aa22.53■■□□□ 1.2
CD9-209ENST00000540891 IL17REQ8NFR9 667 aa22.53■■□□□ 1.2
CD9-209ENST00000540891 TFCP2L1Q9NZI6 479 aa22.53■■□□□ 1.2
CD9-209ENST00000540891 ATP6V1AP38606 617 aa22.52■■□□□ 1.2
CD9-209ENST00000540891 PLEKHF1Q96S99 279 aa22.52■■□□□ 1.2
CD9-209ENST00000540891 ZNF831Q5JPB2 1677 aa22.52■■□□□ 1.2
CD9-209ENST00000540891 SPON1Q9HCB6 807 aa22.51■■□□□ 1.19
CD9-209ENST00000540891 AMIGO3Q86WK7 504 aa22.5■■□□□ 1.19
CD9-209ENST00000540891 RBM42Q9BTD8 480 aaKnown RBP22.5■■□□□ 1.19
CD9-209ENST00000540891 CEMIPQ8WUJ3 1361 aa22.5■■□□□ 1.19
CD9-209ENST00000540891 PTGER2P43116 358 aa22.48■■□□□ 1.19
CD9-209ENST00000540891 SLC39A6Q13433 755 aa22.48■■□□□ 1.19
CD9-209ENST00000540891 COL23A1Q86Y22 540 aaPredicted RBP22.48■■□□□ 1.19
CD9-209ENST00000540891 MTFR1LQ9H019 292 aa22.48■■□□□ 1.19
CD9-209ENST00000540891 ATF5Q9Y2D1 282 aaPredicted RBP22.48■■□□□ 1.19
CD9-209ENST00000540891 PTCD1O75127 700 aaKnown RBP22.47■■□□□ 1.19
CD9-209ENST00000540891 HMGB2P26583 209 aaKnown RBP22.47■■□□□ 1.19
CD9-209ENST00000540891 KCPQ6ZWJ8 1503 aa22.47■■□□□ 1.19
CD9-209ENST00000540891 SIPA1L3O60292 1781 aaPredicted RBP22.46■■□□□ 1.19
CD9-209ENST00000540891 SMIM5Q71RC9 77 aa22.46■■□□□ 1.19
CD9-209ENST00000540891 AK7Q96M32 723 aa22.46■■□□□ 1.19
CD9-209ENST00000540891 SGIP1Q9BQI5 828 aa22.46■■□□□ 1.19
CD9-209ENST00000540891 CICQ96RK0 1608 aaPredicted RBP22.46■■□□□ 1.19
CD9-209ENST00000540891 COL5A3P25940 1745 aaPredicted RBP22.45■■□□□ 1.19
CD9-209ENST00000540891 UBR3Q6ZT12 1888 aa22.45■■□□□ 1.19
CD9-209ENST00000540891 TJP1Q07157 1748 aa22.45■■□□□ 1.18
CD9-209ENST00000540891 SLC16A10Q8TF71 515 aa22.44■■□□□ 1.18
CD9-209ENST00000540891 TEFQ10587 303 aa22.43■■□□□ 1.18
CD9-209ENST00000540891 DCTN1Q14203 1278 aa22.43■■□□□ 1.18
CD9-209ENST00000540891 MCM10Q7L590 875 aa22.43■■□□□ 1.18
CD9-209ENST00000540891 UBR2Q8IWV8 1755 aa22.43■■□□□ 1.18
CD9-209ENST00000540891 COL24A1Q17RW2 1714 aa22.43■■□□□ 1.18
CD9-209ENST00000540891 CNTNAP4Q9C0A0 1308 aa22.41■■□□□ 1.18
CD9-209ENST00000540891 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.41■■□□□ 1.18
CD9-209ENST00000540891 GNPATO15228 680 aa22.41■■□□□ 1.18
CD9-209ENST00000540891 HTATSF1O43719 755 aaKnown RBP22.41■■□□□ 1.18
CD9-209ENST00000540891 NFE2L2Q16236 605 aa22.41■■□□□ 1.18
CD9-209ENST00000540891 FLAD1Q8NFF5 587 aa22.41■■□□□ 1.18
CD9-209ENST00000540891 PNNQ9H307 717 aaKnown RBP22.41■■□□□ 1.18
CD9-209ENST00000540891 DLG5Q8TDM6 1919 aa22.4■■□□□ 1.18
CD9-209ENST00000540891 PHF14O94880 888 aa22.4■■□□□ 1.18
CD9-209ENST00000540891 NEFMP07197 916 aa22.4■■□□□ 1.18
CD9-209ENST00000540891 SSFA2P28290 1259 aa22.4■■□□□ 1.18
CD9-209ENST00000540891 RC3H1Q5TC82 1133 aaKnown RBP22.4■■□□□ 1.18
CD9-209ENST00000540891 RTF1Q92541 710 aaKnown RBP22.4■■□□□ 1.18
CD9-209ENST00000540891 MAPK8IP3Q9UPT6 1336 aa22.39■■□□□ 1.18
CD9-209ENST00000540891 MSH5O43196 834 aa22.39■■□□□ 1.17
CD9-209ENST00000540891 ZNF790Q6PG37 636 aa22.39■■□□□ 1.17
CD9-209ENST00000540891 DNAJC10Q8IXB1 793 aa22.39■■□□□ 1.17
CD9-209ENST00000540891 MYH14Q7Z406 1995 aaKnown RBP22.39■■□□□ 1.17
CD9-209ENST00000540891 CCDC184Q52MB2 194 aa22.38■■□□□ 1.17
CD9-209ENST00000540891 PPP1R1BQ9UD71 204 aaPredicted RBP22.38■■□□□ 1.17
CD9-209ENST00000540891 ADAMTS8Q9UP79 889 aa22.38■■□□□ 1.17
CD9-209ENST00000540891 KCNQ3O43525 872 aa22.37■■□□□ 1.17
CD9-209ENST00000540891 CRKLP46109 303 aaKnown RBP22.37■■□□□ 1.17
CD9-209ENST00000540891 WDR43Q15061 677 aaKnown RBP eCLIP22.37■■□□□ 1.17
CD9-209ENST00000540891 ZNF496Q96IT1 587 aaPredicted RBP22.37■■□□□ 1.17
CD9-209ENST00000540891 BTBD11A6QL63 1104 aa22.36■■□□□ 1.17
CD9-209ENST00000540891 CCDC146Q8IYE0 955 aa22.36■■□□□ 1.17
CD9-209ENST00000540891 TTC5Q8N0Z6 440 aa22.36■■□□□ 1.17
CD9-209ENST00000540891 VSIG10Q8N0Z9 540 aa22.36■■□□□ 1.17
CD9-209ENST00000540891 RPS6KA4O75676 772 aa22.35■■□□□ 1.17
CD9-209ENST00000540891 CYP19A1P11511 503 aaPredicted RBP22.35■■□□□ 1.17
CD9-209ENST00000540891 MSL1Q68DK7 614 aa22.35■■□□□ 1.17
CD9-209ENST00000540891 INTS5Q6P9B9 1019 aaKnown RBP22.35■■□□□ 1.17
CD9-209ENST00000540891 RTCBQ9Y3I0 505 aaKnown RBP22.35■■□□□ 1.17
CD9-209ENST00000540891 THUMPD2Q9BTF0 503 aaKnown RBP22.34■■□□□ 1.17
CD9-209ENST00000540891 HEG1Q9ULI3 1381 aa22.34■■□□□ 1.17
CD9-209ENST00000540891 ANP32CO43423 234 aa22.33■■□□□ 1.17
CD9-209ENST00000540891 TMPOP42166 694 aaKnown RBP22.33■■□□□ 1.17
CD9-209ENST00000540891 ARXQ96QS3 562 aa22.33■■□□□ 1.17
CD9-209ENST00000540891 ARHGEF1Q92888 912 aaKnown RBP22.32■■□□□ 1.16
CD9-209ENST00000540891 RUNDC1Q96C34 613 aa22.32■■□□□ 1.16
CD9-209ENST00000540891 ADRA2BP18089 450 aa22.31■■□□□ 1.16
CD9-209ENST00000540891 RIPK4P57078 832 aa22.31■■□□□ 1.16
CD9-209ENST00000540891 TAF7Q15545 349 aaPredicted RBP22.31■■□□□ 1.16
CD9-209ENST00000540891 TRAPPC3LQ5T215 181 aa22.31■■□□□ 1.16
CD9-209ENST00000540891 CCDC87Q9NVE4 849 aa22.31■■□□□ 1.16
CD9-209ENST00000540891 POLD1P28340 1107 aa22.3■■□□□ 1.16
CD9-209ENST00000540891 FMNL2Q96PY5 1086 aa22.3■■□□□ 1.16
CD9-209ENST00000540891 FHDC1Q9C0D6 1143 aaPredicted RBP22.3■■□□□ 1.16
CD9-209ENST00000540891 RRP7AQ9Y3A4 280 aaKnown RBP22.3■■□□□ 1.16
CD9-209ENST00000540891 MIS18AQ9NYP9 233 aa22.29■■□□□ 1.16
CD9-209ENST00000540891 ZBTB1Q9Y2K1 713 aa22.29■■□□□ 1.16
CD9-209ENST00000540891 SOS1Q07889 1333 aaPredicted RBP22.29■■□□□ 1.16
CD9-209ENST00000540891 C4AP0C0L4 1744 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms