RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PXDNQ92626 1479 aa17.25■□□□□ 0.35
RTN3-210ENST00000540798 AKAP4Q5JQC9 854 aa17.25■□□□□ 0.35
RTN3-210ENST00000540798 LRRC59Q96AG4 307 aaKnown RBP17.25■□□□□ 0.35
RTN3-210ENST00000540798 MEIS3Q99687 375 aa17.25■□□□□ 0.35
RTN3-210ENST00000540798 STK31Q9BXU1 1019 aa17.24■□□□□ 0.35
RTN3-210ENST00000540798 AMOTQ4VCS5 1084 aa17.23■□□□□ 0.35
RTN3-210ENST00000540798 DAXXQ9UER7 740 aaPredicted RBP17.23■□□□□ 0.35
RTN3-210ENST00000540798 FLIIQ13045 1269 aa17.23■□□□□ 0.35
RTN3-210ENST00000540798 USP35Q9P2H5 1018 aa17.23■□□□□ 0.35
RTN3-210ENST00000540798 ANKRD24Q8TF21 1146 aa17.23■□□□□ 0.35
RTN3-210ENST00000540798 HOXB7P09629 217 aa17.22■□□□□ 0.35
RTN3-210ENST00000540798 PLEKHO1Q53GL0 409 aaPredicted RBP17.22■□□□□ 0.35
RTN3-210ENST00000540798 LGR6Q9HBX8 967 aa17.22■□□□□ 0.35
RTN3-210ENST00000540798 AXIN2Q9Y2T1 843 aa17.22■□□□□ 0.35
RTN3-210ENST00000540798 F6X3S4 739 aa17.21■□□□□ 0.35
RTN3-210ENST00000540798 EIF4A1P60842 406 aaKnown RBP17.21■□□□□ 0.35
RTN3-210ENST00000540798 C22orf23Q9BZE7 217 aa17.2■□□□□ 0.34
RTN3-210ENST00000540798 ATF3P18847 181 aa17.2■□□□□ 0.34
RTN3-210ENST00000540798 BECN1Q14457 450 aa17.2■□□□□ 0.34
RTN3-210ENST00000540798 PLEKHG2Q9H7P9 1386 aa17.2■□□□□ 0.34
RTN3-210ENST00000540798 ZNF530Q6P9A1 599 aaPredicted RBP17.19■□□□□ 0.34
RTN3-210ENST00000540798 PLEKHM2Q8IWE5 1019 aa17.19■□□□□ 0.34
RTN3-210ENST00000540798 ERBB3P21860 1342 aa17.19■□□□□ 0.34
RTN3-210ENST00000540798 STRCQ7RTU9 1775 aa17.19■□□□□ 0.34
RTN3-210ENST00000540798 SCN11AQ9UI33 1791 aa17.19■□□□□ 0.34
RTN3-210ENST00000540798 HEG1Q9ULI3 1381 aa17.19■□□□□ 0.34
RTN3-210ENST00000540798 ZBTB7CA1YPR0 619 aa17.19■□□□□ 0.34
RTN3-210ENST00000540798 RBM25P49756 843 aaKnown RBP17.19■□□□□ 0.34
RTN3-210ENST00000540798 TNS3Q68CZ2 1445 aa17.18■□□□□ 0.34
RTN3-210ENST00000540798 TUBGCP6Q96RT7 1819 aa17.18■□□□□ 0.34
RTN3-210ENST00000540798 RNMTO43148 476 aaKnown RBP17.18■□□□□ 0.34
RTN3-210ENST00000540798 MFAP1P55081 439 aaKnown RBP17.18■□□□□ 0.34
RTN3-210ENST00000540798 FKBP5Q13451 457 aaPredicted RBP17.16■□□□□ 0.34
RTN3-210ENST00000540798 HDGFL1Q5TGJ6 251 aa17.16■□□□□ 0.34
RTN3-210ENST00000540798 SLC4A10Q6U841 1118 aa17.16■□□□□ 0.34
RTN3-210ENST00000540798 GSPT1P15170 499 aaKnown RBP17.16■□□□□ 0.34
RTN3-210ENST00000540798 LMOD2Q6P5Q4 547 aa17.16■□□□□ 0.34
RTN3-210ENST00000540798 CADPS2Q86UW7 1296 aa17.16■□□□□ 0.34
RTN3-210ENST00000540798 PKD1L3Q7Z443 1732 aa17.16■□□□□ 0.34
RTN3-210ENST00000540798 GNAI2P04899 355 aa17.16■□□□□ 0.34
RTN3-210ENST00000540798 RTL5Q5HYW3 569 aaPredicted RBP17.16■□□□□ 0.34
RTN3-210ENST00000540798 CHMP4AQ9BY43 222 aa17.16■□□□□ 0.34
RTN3-210ENST00000540798 TBC1D2Q9BYX2 928 aa17.16■□□□□ 0.34
RTN3-210ENST00000540798 HMMRO75330 724 aa17.15■□□□□ 0.34
RTN3-210ENST00000540798 NPHP3Q7Z494 1330 aa17.15■□□□□ 0.34
RTN3-210ENST00000540798 GNAI3P08754 354 aa17.15■□□□□ 0.34
RTN3-210ENST00000540798 PKNOX2Q96KN3 472 aa17.15■□□□□ 0.34
RTN3-210ENST00000540798 TTC22Q5TAA0 569 aa17.14■□□□□ 0.34
RTN3-210ENST00000540798 C1orf141Q5JVX7 400 aa17.14■□□□□ 0.33
RTN3-210ENST00000540798 MPRIPQ6WCQ1 1025 aa17.14■□□□□ 0.33
RTN3-210ENST00000540798 TBC1D9Q6ZT07 1266 aa17.14■□□□□ 0.33
RTN3-210ENST00000540798 NECTIN2Q92692 538 aa17.14■□□□□ 0.33
RTN3-210ENST00000540798 BTBD11A6QL63 1104 aa17.14■□□□□ 0.33
RTN3-210ENST00000540798 TEFQ10587 303 aa17.14■□□□□ 0.33
RTN3-210ENST00000540798 KCNQ3O43525 872 aa17.13■□□□□ 0.33
RTN3-210ENST00000540798 ANTXR1Q9H6X2 564 aa17.13■□□□□ 0.33
RTN3-210ENST00000540798 PHAXQ9H814 394 aaKnown RBP17.13■□□□□ 0.33
RTN3-210ENST00000540798 NFKBIBQ15653 356 aa17.12■□□□□ 0.33
RTN3-210ENST00000540798 C16orf71Q8IYS4 520 aaPredicted RBP17.12■□□□□ 0.33
RTN3-210ENST00000540798 CPDO75976 1380 aa17.12■□□□□ 0.33
RTN3-210ENST00000540798 DDX17Q92841 729 aaKnown RBP17.12■□□□□ 0.33
RTN3-210ENST00000540798 SPATA31A3Q5VYP0 1347 aa17.12■□□□□ 0.33
RTN3-210ENST00000540798 CDC45O75419 566 aa17.12■□□□□ 0.33
RTN3-210ENST00000540798 ATP8B2P98198 1209 aa17.12■□□□□ 0.33
RTN3-210ENST00000540798 USP44Q9H0E7 712 aa17.12■□□□□ 0.33
RTN3-210ENST00000540798 MRC1P22897 1456 aa17.12■□□□□ 0.33
RTN3-210ENST00000540798 ZC3H6P61129 1189 aaKnown RBP17.11■□□□□ 0.33
RTN3-210ENST00000540798 OSBPL3Q9H4L5 887 aa17.11■□□□□ 0.33
RTN3-210ENST00000540798 MEGF6O75095 1541 aa17.11■□□□□ 0.33
RTN3-210ENST00000540798 PARP4Q9UKK3 1724 aaKnown RBP17.1■□□□□ 0.33
RTN3-210ENST00000540798 C5P01031 1676 aa17.1■□□□□ 0.33
RTN3-210ENST00000540798 SALL3Q9BXA9 1300 aa17.1■□□□□ 0.33
RTN3-210ENST00000540798 OTUD7AQ8TE49 926 aaPredicted RBP17.1■□□□□ 0.33
RTN3-210ENST00000540798 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.1■□□□□ 0.33
RTN3-210ENST00000540798 CHPF2Q9P2E5 772 aa17.1■□□□□ 0.33
RTN3-210ENST00000540798 KDM6AO15550 1401 aaPredicted RBP17.1■□□□□ 0.33
RTN3-210ENST00000540798 SMARCA5O60264 1052 aaPredicted RBP17.09■□□□□ 0.33
RTN3-210ENST00000540798 HSPA2P54652 639 aa17.09■□□□□ 0.33
RTN3-210ENST00000540798 KIF2CQ99661 725 aa17.09■□□□□ 0.33
RTN3-210ENST00000540798 ABCA3Q99758 1704 aa17.09■□□□□ 0.33
RTN3-210ENST00000540798 ADCY9O60503 1353 aa17.09■□□□□ 0.33
RTN3-210ENST00000540798 IBTKQ9P2D0 1353 aaPredicted RBP17.09■□□□□ 0.33
RTN3-210ENST00000540798 GIGYF1O75420 1035 aaPredicted RBP17.08■□□□□ 0.33
RTN3-210ENST00000540798 SNX21Q969T3 373 aa17.08■□□□□ 0.33
RTN3-210ENST00000540798 PNMA6EA0A0J9YXQ4 647 aa17.08■□□□□ 0.32
RTN3-210ENST00000540798 BEND3Q5T5X7 828 aa17.07■□□□□ 0.32
RTN3-210ENST00000540798 EIF2S2P20042 333 aaKnown RBP17.07■□□□□ 0.32
RTN3-210ENST00000540798 LRRFIP2Q9Y608 721 aaKnown RBP17.07■□□□□ 0.32
RTN3-210ENST00000540798 SRCIN1Q9C0H9 1055 aa17.06■□□□□ 0.32
RTN3-210ENST00000540798 DBF4Q9UBU7 674 aaPredicted RBP17.06■□□□□ 0.32
RTN3-210ENST00000540798 SSH3Q8TE77 659 aa17.06■□□□□ 0.32
RTN3-210ENST00000540798 DNAAF4Q8WXU2 420 aa17.06■□□□□ 0.32
RTN3-210ENST00000540798 BRINP3Q76B58 766 aa17.05■□□□□ 0.32
RTN3-210ENST00000540798 UBTFL1P0CB47 393 aaPredicted RBP17.05■□□□□ 0.32
RTN3-210ENST00000540798 PHKG2P15735 406 aa17.05■□□□□ 0.32
RTN3-210ENST00000540798 SDSP20132 328 aa17.05■□□□□ 0.32
RTN3-210ENST00000540798 POLA2Q14181 598 aa17.05■□□□□ 0.32
RTN3-210ENST00000540798 RAPGEF4Q8WZA2 1011 aa17.05■□□□□ 0.32
RTN3-210ENST00000540798 TATP17735 454 aaPredicted RBP17.04■□□□□ 0.32
RTN3-210ENST00000540798 GLI3P10071 1580 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms