RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PRAG1Q86YV5 1406 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 C11orf95C9JLR9 678 aaPredicted RBP16.98■□□□□ 0.31
COLCA1-204ENST00000540738 ANKRD1Q15327 319 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 DISP3Q9P2K9 1392 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 USP5P45974 858 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 DNAJC5Q9H3Z4 198 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 RTCBQ9Y3I0 505 aaKnown RBP16.98■□□□□ 0.31
COLCA1-204ENST00000540738 LDHCP07864 332 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 STK32BQ9NY57 414 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 PCDH11XQ9BZA7 1347 aa16.97■□□□□ 0.31
COLCA1-204ENST00000540738 PCDH11YQ9BZA8 1340 aa16.97■□□□□ 0.31
COLCA1-204ENST00000540738 RALGAPBQ86X10 1494 aa16.97■□□□□ 0.31
COLCA1-204ENST00000540738 MAP3K12Q12852 859 aa16.97■□□□□ 0.31
COLCA1-204ENST00000540738 PAXIP1Q6ZW49 1069 aaPredicted RBP16.97■□□□□ 0.31
COLCA1-204ENST00000540738 PDZRN3Q9UPQ7 1066 aa16.97■□□□□ 0.31
COLCA1-204ENST00000540738 PTPRKQ15262 1439 aa16.97■□□□□ 0.31
COLCA1-204ENST00000540738 PIK3R4Q99570 1358 aa16.96■□□□□ 0.31
COLCA1-204ENST00000540738 FOXD4L6Q3SYB3 417 aaPredicted RBP16.96■□□□□ 0.31
COLCA1-204ENST00000540738 CCDC152Q4G0S7 254 aa16.96■□□□□ 0.31
COLCA1-204ENST00000540738 FOXD4L3Q6VB84 417 aaPredicted RBP16.96■□□□□ 0.31
COLCA1-204ENST00000540738 NYXQ9GZU5 481 aa16.96■□□□□ 0.31
COLCA1-204ENST00000540738 DDX49Q9Y6V7 483 aaKnown RBP16.96■□□□□ 0.31
COLCA1-204ENST00000540738 PARP3Q9Y6F1 533 aa16.96■□□□□ 0.31
COLCA1-204ENST00000540738 CFAP43Q8NDM7 1665 aa16.96■□□□□ 0.31
COLCA1-204ENST00000540738 TXLNAP40222 546 aa16.96■□□□□ 0.31
COLCA1-204ENST00000540738 TMEM132AQ24JP5 1023 aa16.96■□□□□ 0.31
COLCA1-204ENST00000540738 POLR3DP05423 398 aaPredicted RBP16.95■□□□□ 0.3
COLCA1-204ENST00000540738 FLIIQ13045 1269 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 CDK5RAP3Q96JB5 506 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 DCAF5Q96JK2 942 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 PRM3Q9NNZ6 103 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 PCMTD1Q96MG8 357 aaPredicted RBP16.95■□□□□ 0.3
COLCA1-204ENST00000540738 KRT32Q14532 448 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 IP6K1Q92551 441 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 IL16Q14005 1332 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 NLRP3Q96P20 1036 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 CYP46A1Q9Y6A2 500 aa16.95■□□□□ 0.3
COLCA1-204ENST00000540738 MAST1Q9Y2H9 1570 aa16.94■□□□□ 0.3
COLCA1-204ENST00000540738 GLRX3O76003 335 aaKnown RBP16.94■□□□□ 0.3
COLCA1-204ENST00000540738 IPO7O95373 1038 aaKnown RBP16.94■□□□□ 0.3
COLCA1-204ENST00000540738 MYO1BO43795 1136 aa16.94■□□□□ 0.3
COLCA1-204ENST00000540738 FOSBP53539 338 aa16.94■□□□□ 0.3
COLCA1-204ENST00000540738 SPTY2D1Q68D10 685 aaPredicted RBP16.94■□□□□ 0.3
COLCA1-204ENST00000540738 ANKRD13DQ6ZTN6 518 aa16.93■□□□□ 0.3
COLCA1-204ENST00000540738 IL1RAPL2Q9NP60 686 aa16.93■□□□□ 0.3
COLCA1-204ENST00000540738 CDKL5O76039 1030 aa16.93■□□□□ 0.3
COLCA1-204ENST00000540738 SPINK5Q9NQ38 1064 aaPredicted RBP16.93■□□□□ 0.3
COLCA1-204ENST00000540738 GOLGA6L3A6NEY3 463 aa16.93■□□□□ 0.3
COLCA1-204ENST00000540738 LDHAL6AQ6ZMR3 332 aa16.93■□□□□ 0.3
COLCA1-204ENST00000540738 MAP3K2Q9Y2U5 619 aa16.93■□□□□ 0.3
COLCA1-204ENST00000540738 FANCIQ9NVI1 1328 aa16.93■□□□□ 0.3
COLCA1-204ENST00000540738 USP21Q9UK80 565 aa16.92■□□□□ 0.3
COLCA1-204ENST00000540738 IMMTQ16891 758 aaKnown RBP16.92■□□□□ 0.3
COLCA1-204ENST00000540738 MPHOSPH10O00566 681 aaKnown RBP16.92■□□□□ 0.3
COLCA1-204ENST00000540738 TPTE2Q6XPS3 522 aa16.92■□□□□ 0.3
COLCA1-204ENST00000540738 TMEM57Q8N5G2 664 aa16.92■□□□□ 0.3
COLCA1-204ENST00000540738 DNMT1P26358 1616 aaKnown RBP16.92■□□□□ 0.3
COLCA1-204ENST00000540738 EIF4A2Q14240 407 aaKnown RBP16.91■□□□□ 0.3
COLCA1-204ENST00000540738 RABEP1Q15276 862 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 CHD1LQ86WJ1 897 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 SSH1Q8WYL5 1049 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 MKNK2Q9HBH9 465 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 ADGRL2O95490 1459 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 BAG6P46379 1132 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 NUP133Q8WUM0 1156 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 ORAI2Q96SN7 254 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 CHMP5Q9NZZ3 219 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 HDAC9Q9UKV0 1011 aa16.91■□□□□ 0.3
COLCA1-204ENST00000540738 NEK4P51957 841 aa16.9■□□□□ 0.3
COLCA1-204ENST00000540738 ZFYVE9O95405 1425 aa16.9■□□□□ 0.3
COLCA1-204ENST00000540738 ANKRD18AQ8IVF6 992 aa16.9■□□□□ 0.3
COLCA1-204ENST00000540738 STK11IPQ8N1F8 1099 aa16.9■□□□□ 0.3
COLCA1-204ENST00000540738 SIRT1Q96EB6 747 aa16.9■□□□□ 0.3
COLCA1-204ENST00000540738 BAG3O95817 575 aa16.89■□□□□ 0.3
COLCA1-204ENST00000540738 SAMD9Q5K651 1589 aa16.89■□□□□ 0.29
COLCA1-204ENST00000540738 TTF1Q15361 905 aaPredicted RBP16.89■□□□□ 0.29
COLCA1-204ENST00000540738 KRI1Q8N9T8 703 aaKnown RBP16.89■□□□□ 0.29
COLCA1-204ENST00000540738 YEATS2Q9ULM3 1422 aa16.89■□□□□ 0.29
COLCA1-204ENST00000540738 JMYQ8N9B5 988 aa16.89■□□□□ 0.29
COLCA1-204ENST00000540738 NIP7Q9Y221 180 aaKnown RBP eCLIP16.89■□□□□ 0.29
COLCA1-204ENST00000540738 PIK3C2GO75747 1445 aa16.88■□□□□ 0.29
COLCA1-204ENST00000540738 HOXC9P31274 260 aa16.88■□□□□ 0.29
COLCA1-204ENST00000540738 UBE3BQ7Z3V4 1068 aa16.88■□□□□ 0.29
COLCA1-204ENST00000540738 EXOC6BQ9Y2D4 811 aa16.88■□□□□ 0.29
COLCA1-204ENST00000540738 ASXL1Q8IXJ9 1541 aa16.88■□□□□ 0.29
COLCA1-204ENST00000540738 KRT18P05783 430 aaKnown RBP16.88■□□□□ 0.29
COLCA1-204ENST00000540738 BLOC1S2Q6QNY1 142 aa16.88■□□□□ 0.29
COLCA1-204ENST00000540738 ZNF396Q96N95 335 aaPredicted RBP16.88■□□□□ 0.29
COLCA1-204ENST00000540738 ATP5J2-PTCD1G3V325 749 aa16.88■□□□□ 0.29
COLCA1-204ENST00000540738 NOL7Q9UMY1 257 aaKnown RBP16.88■□□□□ 0.29
COLCA1-204ENST00000540738 ATP2B1P20020 1258 aa16.88■□□□□ 0.29
COLCA1-204ENST00000540738 UTP14AQ9BVJ6 771 aaKnown RBP16.87■□□□□ 0.29
COLCA1-204ENST00000540738 NAPBQ9H115 298 aa16.87■□□□□ 0.29
COLCA1-204ENST00000540738 GSTO1P78417 241 aa16.87■□□□□ 0.29
COLCA1-204ENST00000540738 TRAPPC3LQ5T215 181 aa16.87■□□□□ 0.29
COLCA1-204ENST00000540738 DZIP3Q86Y13 1208 aaKnown RBP16.87■□□□□ 0.29
COLCA1-204ENST00000540738 POLKQ9UBT6 870 aa16.87■□□□□ 0.29
COLCA1-204ENST00000540738 U3KPZ7 1027 aaPredicted RBP16.87■□□□□ 0.29
COLCA1-204ENST00000540738 PI4KAP2A4QPH2 592 aa16.87■□□□□ 0.29
COLCA1-204ENST00000540738 PI4KAP1Q8N8J0 262 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms