RNA–Protein interactions for RNA: ENST00000540236.3

PBX1-212, Transcript of PBX homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene PBX1, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-212ENST00000540236 SHTN1A0MZ66 631 aa12.99□□□□□ -0.33
PBX1-212ENST00000540236 TMED8Q6PL24 325 aaPredicted RBP12.99□□□□□ -0.33
PBX1-212ENST00000540236 CWC27Q6UX04 472 aaKnown RBP12.99□□□□□ -0.33
PBX1-212ENST00000540236 CPLX3Q8WVH0 158 aa12.99□□□□□ -0.33
PBX1-212ENST00000540236 SMC1AQ14683 1233 aaKnown RBP12.99□□□□□ -0.33
PBX1-212ENST00000540236 KARSQ15046 597 aaKnown RBP12.99□□□□□ -0.33
PBX1-212ENST00000540236 CCDC171Q6TFL3 1326 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 OTUD7AQ8TE49 926 aaPredicted RBP12.98□□□□□ -0.33
PBX1-212ENST00000540236 GDAP1L1Q96MZ0 367 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 UBE2HP62256 183 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 FAM160A1Q05DH4 1040 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 NUTM1Q86Y26 1132 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 CPSF2Q9P2I0 782 aaKnown RBP12.98□□□□□ -0.33
PBX1-212ENST00000540236 PCF11O94913 1555 aaKnown RBP12.98□□□□□ -0.33
PBX1-212ENST00000540236 EVCP57679 992 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 ERCC4Q92889 916 aaPredicted RBP12.98□□□□□ -0.33
PBX1-212ENST00000540236 SRCIN1Q9C0H9 1055 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 KINO60870 393 aaKnown RBP12.98□□□□□ -0.33
PBX1-212ENST00000540236 SFPQP23246 707 aaKnown RBP eCLIP12.98□□□□□ -0.33
PBX1-212ENST00000540236 HINFPQ9BQA5 517 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 NAT10Q9H0A0 1025 aaKnown RBP12.98□□□□□ -0.33
PBX1-212ENST00000540236 USP27XA6NNY8 438 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 STX6O43752 255 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 CPA1P15085 419 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 GNG11P61952 73 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 KRT85P78386 507 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 GUCY1B3Q02153 619 aa12.98□□□□□ -0.33
PBX1-212ENST00000540236 FAM173BQ6P4H8 233 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 JPH2Q9BR39 696 aaPredicted RBP12.97□□□□□ -0.33
PBX1-212ENST00000540236 ARFGAP3Q9NP61 516 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 USP16Q9Y5T5 823 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 ZMYM4Q5VZL5 1548 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 CLNS1AP54105 237 aaKnown RBP12.97□□□□□ -0.33
PBX1-212ENST00000540236 BMP2KLQ5H9B9 411 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 JAKMIP1Q96N16 626 aaKnown RBP12.97□□□□□ -0.33
PBX1-212ENST00000540236 KCNF1Q9H3M0 494 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 ERLIN1O75477 346 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 CCDC172P0C7W6 258 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 ERBINQ96RT1 1412 aa12.97□□□□□ -0.33
PBX1-212ENST00000540236 ME1P48163 572 aa12.96□□□□□ -0.33
PBX1-212ENST00000540236 DACT1Q9NYF0 836 aa12.96□□□□□ -0.33
PBX1-212ENST00000540236 ERLIN2O94905 339 aa12.96□□□□□ -0.33
PBX1-212ENST00000540236 MIA2Q96PC5 1412 aa12.96□□□□□ -0.33
PBX1-212ENST00000540236 SDSP20132 328 aa12.96□□□□□ -0.33
PBX1-212ENST00000540236 NAP1L1P55209 391 aaKnown RBP12.96□□□□□ -0.33
PBX1-212ENST00000540236 AOPEPQ8N6M6 819 aa12.96□□□□□ -0.33
PBX1-212ENST00000540236 PPM1EQ8WY54 764 aa12.96□□□□□ -0.33
PBX1-212ENST00000540236 SMARCC1Q92922 1105 aaPredicted RBP12.96□□□□□ -0.33
PBX1-212ENST00000540236 IL1RAPL2Q9NP60 686 aa12.96□□□□□ -0.33
PBX1-212ENST00000540236 CCDC12Q8WUD4 166 aaPredicted RBP12.96□□□□□ -0.34
PBX1-212ENST00000540236 CBX8Q9HC52 389 aa12.96□□□□□ -0.34
PBX1-212ENST00000540236 PLEKHH2Q8IVE3 1493 aa12.96□□□□□ -0.34
PBX1-212ENST00000540236 ATP6V1AP38606 617 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 CFAP100Q494V2 611 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 KIF2AO00139 706 aaPredicted RBP12.95□□□□□ -0.34
PBX1-212ENST00000540236 CLCN6P51797 869 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 GOLGA8FQ08AF8 430 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 GOLGA8DPQ0D2H9 430 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 LCMT1Q9UIC8 334 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 EXOC6BQ9Y2D4 811 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 RPSAP08865 295 aaKnown RBP12.95□□□□□ -0.34
PBX1-212ENST00000540236 ZSCAN22P10073 491 aaPredicted RBP12.95□□□□□ -0.34
PBX1-212ENST00000540236 SCP2P22307 547 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 CEP83Q9Y592 693 aa12.95□□□□□ -0.34
PBX1-212ENST00000540236 ZNF692Q9BU19 519 aaPredicted RBP12.95□□□□□ -0.34
PBX1-212ENST00000540236 ANKRD30BQ9BXX2 1392 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 AK9Q5TCS8 1911 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 TTC22Q5TAA0 569 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 FAM200AQ8TCP9 573 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 KCNG1Q9UIX4 513 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 CCDC144AA2RUR9 1427 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 USP26Q9BXU7 913 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 ZNF75DP51815 510 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 PCMTD1Q96MG8 357 aaPredicted RBP12.94□□□□□ -0.34
PBX1-212ENST00000540236 ATAD2Q6PL18 1390 aa12.94□□□□□ -0.34
PBX1-212ENST00000540236 NBPF11Q86T75 865 aa12.93□□□□□ -0.34
PBX1-212ENST00000540236 MORC2Q9Y6X9 1032 aaPredicted RBP12.93□□□□□ -0.34
PBX1-212ENST00000540236 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
PBX1-212ENST00000540236 WWC2Q6AWC2 1192 aa12.93□□□□□ -0.34
PBX1-212ENST00000540236 KIAA1524Q8TCG1 905 aa12.93□□□□□ -0.34
PBX1-212ENST00000540236 ANKRD7Q92527 254 aa12.93□□□□□ -0.34
PBX1-212ENST00000540236 GGNBP2Q9H3C7 697 aa12.93□□□□□ -0.34
PBX1-212ENST00000540236 SPG7Q9UQ90 795 aa12.93□□□□□ -0.34
PBX1-212ENST00000540236 CUX1P39880 1505 aa12.93□□□□□ -0.34
PBX1-212ENST00000540236 EIF4E1BA6NMX2 242 aaKnown RBP12.93□□□□□ -0.34
PBX1-212ENST00000540236 TCEANC2Q96MN5 208 aa12.93□□□□□ -0.34
PBX1-212ENST00000540236 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.92□□□□□ -0.34
PBX1-212ENST00000540236 MCM2P49736 904 aa12.92□□□□□ -0.34
PBX1-212ENST00000540236 KIF4BQ2VIQ3 1234 aa12.92□□□□□ -0.34
PBX1-212ENST00000540236 PDE11AQ9HCR9 933 aa12.92□□□□□ -0.34
PBX1-212ENST00000540236 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.92□□□□□ -0.34
PBX1-212ENST00000540236 CCDC70Q6NSX1 233 aa12.92□□□□□ -0.34
PBX1-212ENST00000540236 BCCIPQ9P287 314 aaKnown RBP eCLIP12.92□□□□□ -0.34
PBX1-212ENST00000540236 CALR3Q96L12 384 aaKnown RBP12.92□□□□□ -0.34
PBX1-212ENST00000540236 CCP110O43303 1012 aa12.91□□□□□ -0.34
PBX1-212ENST00000540236 ZEB2O60315 1214 aa12.91□□□□□ -0.34
PBX1-212ENST00000540236 PLPPR3Q6T4P5 718 aa12.91□□□□□ -0.34
PBX1-212ENST00000540236 UTP14AQ9BVJ6 771 aaKnown RBP12.91□□□□□ -0.34
PBX1-212ENST00000540236 PARD3Q8TEW0 1356 aa12.91□□□□□ -0.34
PBX1-212ENST00000540236 PDLIM2Q96JY6 352 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms