RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 SPON1Q9HCB6 807 aa20.2■□□□□ 0.82
UBE3B-212ENST00000540230 NUDCQ9Y266 331 aa20.2■□□□□ 0.82
UBE3B-212ENST00000540230 MRC1P22897 1456 aa20.19■□□□□ 0.82
UBE3B-212ENST00000540230 SLC4A9Q96Q91 983 aa20.19■□□□□ 0.82
UBE3B-212ENST00000540230 TFCP2L1Q9NZI6 479 aa20.19■□□□□ 0.82
UBE3B-212ENST00000540230 ATF5Q9Y2D1 282 aaPredicted RBP20.19■□□□□ 0.82
UBE3B-212ENST00000540230 RNMTO43148 476 aaKnown RBP20.18■□□□□ 0.82
UBE3B-212ENST00000540230 ITPK1Q13572 414 aa20.18■□□□□ 0.82
UBE3B-212ENST00000540230 RALBP1Q15311 655 aa20.17■□□□□ 0.82
UBE3B-212ENST00000540230 AMIGO3Q86WK7 504 aa20.17■□□□□ 0.82
UBE3B-212ENST00000540230 LINC00116Q8NCU8 138 aa20.17■□□□□ 0.82
UBE3B-212ENST00000540230 PTGER2P43116 358 aa20.17■□□□□ 0.82
UBE3B-212ENST00000540230 UBR3Q6ZT12 1888 aa20.16■□□□□ 0.82
UBE3B-212ENST00000540230 ATP6V1AP38606 617 aa20.16■□□□□ 0.82
UBE3B-212ENST00000540230 SMIM5Q71RC9 77 aa20.16■□□□□ 0.82
UBE3B-212ENST00000540230 MTFR1LQ9H019 292 aa20.16■□□□□ 0.82
UBE3B-212ENST00000540230 SLC52A2Q9HAB3 445 aa20.16■□□□□ 0.82
UBE3B-212ENST00000540230 MAP3K5Q99683 1374 aa20.16■□□□□ 0.82
UBE3B-212ENST00000540230 GAS2L2Q8NHY3 880 aa20.15■□□□□ 0.82
UBE3B-212ENST00000540230 RBM42Q9BTD8 480 aaKnown RBP20.15■□□□□ 0.82
UBE3B-212ENST00000540230 ZNF831Q5JPB2 1677 aa20.15■□□□□ 0.82
UBE3B-212ENST00000540230 COL5A3P25940 1745 aaPredicted RBP20.15■□□□□ 0.82
UBE3B-212ENST00000540230 COL23A1Q86Y22 540 aaPredicted RBP20.14■□□□□ 0.81
UBE3B-212ENST00000540230 SGIP1Q9BQI5 828 aa20.14■□□□□ 0.81
UBE3B-212ENST00000540230 FCHSD2O94868 740 aa20.13■□□□□ 0.81
UBE3B-212ENST00000540230 IL17REQ8NFR9 667 aa20.13■□□□□ 0.81
UBE3B-212ENST00000540230 SIPA1L3O60292 1781 aaPredicted RBP20.12■□□□□ 0.81
UBE3B-212ENST00000540230 PTCD1O75127 700 aaKnown RBP20.12■□□□□ 0.81
UBE3B-212ENST00000540230 MYBBP1AQ9BQG0 1328 aaKnown RBP20.12■□□□□ 0.81
UBE3B-212ENST00000540230 TJP1Q07157 1748 aa20.12■□□□□ 0.81
UBE3B-212ENST00000540230 COL24A1Q17RW2 1714 aa20.12■□□□□ 0.81
UBE3B-212ENST00000540230 GNAT3A8MTJ3 354 aa20.12■□□□□ 0.81
UBE3B-212ENST00000540230 SLC39A6Q13433 755 aa20.12■□□□□ 0.81
UBE3B-212ENST00000540230 AK7Q96M32 723 aa20.12■□□□□ 0.81
UBE3B-212ENST00000540230 KCPQ6ZWJ8 1503 aa20.1■□□□□ 0.81
UBE3B-212ENST00000540230 PRKRIP1Q9H875 184 aaPredicted RBP20.1■□□□□ 0.81
UBE3B-212ENST00000540230 PPP1R1BQ9UD71 204 aaPredicted RBP20.1■□□□□ 0.81
UBE3B-212ENST00000540230 MYH14Q7Z406 1995 aaKnown RBP20.09■□□□□ 0.81
UBE3B-212ENST00000540230 CICQ96RK0 1608 aaPredicted RBP20.09■□□□□ 0.81
UBE3B-212ENST00000540230 MSH5O43196 834 aa20.09■□□□□ 0.81
UBE3B-212ENST00000540230 PHF14O94880 888 aa20.09■□□□□ 0.81
UBE3B-212ENST00000540230 CEMIPQ8WUJ3 1361 aa20.09■□□□□ 0.81
UBE3B-212ENST00000540230 UBR2Q8IWV8 1755 aa20.08■□□□□ 0.81
UBE3B-212ENST00000540230 ZNF316A6NFI3 1004 aaPredicted RBP20.08■□□□□ 0.81
UBE3B-212ENST00000540230 SLC16A10Q8TF71 515 aa20.08■□□□□ 0.81
UBE3B-212ENST00000540230 PLEKHF1Q96S99 279 aa20.08■□□□□ 0.81
UBE3B-212ENST00000540230 DLG5Q8TDM6 1919 aa20.08■□□□□ 0.8
UBE3B-212ENST00000540230 GNPATO15228 680 aa20.07■□□□□ 0.8
UBE3B-212ENST00000540230 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.07■□□□□ 0.8
UBE3B-212ENST00000540230 DCTN1Q14203 1278 aa20.06■□□□□ 0.8
UBE3B-212ENST00000540230 MSL1Q68DK7 614 aa20.06■□□□□ 0.8
UBE3B-212ENST00000540230 HMGB2P26583 209 aaKnown RBP20.05■□□□□ 0.8
UBE3B-212ENST00000540230 TEFQ10587 303 aa20.05■□□□□ 0.8
UBE3B-212ENST00000540230 MCM10Q7L590 875 aa20.05■□□□□ 0.8
UBE3B-212ENST00000540230 SSFA2P28290 1259 aa20.04■□□□□ 0.8
UBE3B-212ENST00000540230 DNAJC10Q8IXB1 793 aa20.04■□□□□ 0.8
UBE3B-212ENST00000540230 FLAD1Q8NFF5 587 aa20.04■□□□□ 0.8
UBE3B-212ENST00000540230 CNTNAP4Q9C0A0 1308 aa20.04■□□□□ 0.8
UBE3B-212ENST00000540230 ARXQ96QS3 562 aa20.02■□□□□ 0.8
UBE3B-212ENST00000540230 FHDC1Q9C0D6 1143 aaPredicted RBP20.02■□□□□ 0.8
UBE3B-212ENST00000540230 C4AP0C0L4 1744 aa20.02■□□□□ 0.79
UBE3B-212ENST00000540230 CRKLP46109 303 aaKnown RBP20.02■□□□□ 0.79
UBE3B-212ENST00000540230 RC3H1Q5TC82 1133 aaKnown RBP20.02■□□□□ 0.79
UBE3B-212ENST00000540230 UTRNP46939 3433 aa20.01■□□□□ 0.79
UBE3B-212ENST00000540230 KCNQ3O43525 872 aa20.01■□□□□ 0.79
UBE3B-212ENST00000540230 ZNF790Q6PG37 636 aa20.01■□□□□ 0.79
UBE3B-212ENST00000540230 RTF1Q92541 710 aaKnown RBP20.01■□□□□ 0.79
UBE3B-212ENST00000540230 RTCBQ9Y3I0 505 aaKnown RBP20.01■□□□□ 0.79
UBE3B-212ENST00000540230 ZNF496Q96IT1 587 aaPredicted RBP20■□□□□ 0.79
UBE3B-212ENST00000540230 RPS6KA4O75676 772 aa19.99■□□□□ 0.79
UBE3B-212ENST00000540230 POLD1P28340 1107 aa19.99■□□□□ 0.79
UBE3B-212ENST00000540230 NFE2L2Q16236 605 aa19.99■□□□□ 0.79
UBE3B-212ENST00000540230 INTS5Q6P9B9 1019 aaKnown RBP19.99■□□□□ 0.79
UBE3B-212ENST00000540230 CYP19A1P11511 503 aaPredicted RBP19.98■□□□□ 0.79
UBE3B-212ENST00000540230 TTC5Q8N0Z6 440 aa19.98■□□□□ 0.79
UBE3B-212ENST00000540230 SYT17Q9BSW7 474 aa19.98■□□□□ 0.79
UBE3B-212ENST00000540230 MAPK8IP3Q9UPT6 1336 aa19.98■□□□□ 0.79
UBE3B-212ENST00000540230 GOLGB1Q14789 3259 aaKnown RBP19.98■□□□□ 0.79
UBE3B-212ENST00000540230 BTBD11A6QL63 1104 aa19.97■□□□□ 0.79
UBE3B-212ENST00000540230 HTATSF1O43719 755 aaKnown RBP19.97■□□□□ 0.79
UBE3B-212ENST00000540230 NEFMP07197 916 aa19.97■□□□□ 0.79
UBE3B-212ENST00000540230 ARHGEF1Q92888 912 aaKnown RBP19.97■□□□□ 0.79
UBE3B-212ENST00000540230 HEG1Q9ULI3 1381 aa19.97■□□□□ 0.79
UBE3B-212ENST00000540230 TRAPPC3LQ5T215 181 aa19.97■□□□□ 0.79
UBE3B-212ENST00000540230 CCDC146Q8IYE0 955 aa19.97■□□□□ 0.79
UBE3B-212ENST00000540230 VSIG10Q8N0Z9 540 aa19.97■□□□□ 0.79
UBE3B-212ENST00000540230 THUMPD2Q9BTF0 503 aaKnown RBP19.97■□□□□ 0.79
UBE3B-212ENST00000540230 CCDC184Q52MB2 194 aa19.96■□□□□ 0.79
UBE3B-212ENST00000540230 CCDC87Q9NVE4 849 aa19.96■□□□□ 0.79
UBE3B-212ENST00000540230 KLHL34Q8N239 644 aa19.95■□□□□ 0.78
UBE3B-212ENST00000540230 PNNQ9H307 717 aaKnown RBP19.95■□□□□ 0.78
UBE3B-212ENST00000540230 ADAMTS8Q9UP79 889 aa19.95■□□□□ 0.78
UBE3B-212ENST00000540230 ZBTB1Q9Y2K1 713 aa19.95■□□□□ 0.78
UBE3B-212ENST00000540230 ADRA2BP18089 450 aa19.94■□□□□ 0.78
UBE3B-212ENST00000540230 WDR43Q15061 677 aaKnown RBP eCLIP19.94■□□□□ 0.78
UBE3B-212ENST00000540230 MIS18AQ9NYP9 233 aa19.93■□□□□ 0.78
UBE3B-212ENST00000540230 SOS1Q07889 1333 aaPredicted RBP19.93■□□□□ 0.78
UBE3B-212ENST00000540230 KDM3BQ7LBC6 1761 aa19.93■□□□□ 0.78
UBE3B-212ENST00000540230 PRAMEF22A3QJZ6 481 aa19.92■□□□□ 0.78
UBE3B-212ENST00000540230 FMNL2Q96PY5 1086 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms