RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 SETD1BQ9UPS6 1966 aaKnown RBP7.33□□□□□ -1.24
PTPRD-214ENST00000540109 SPDYE4A6NLX3 237 aa7.32□□□□□ -1.24
PTPRD-214ENST00000540109 ZNF853P0CG23 659 aa7.32□□□□□ -1.24
PTPRD-214ENST00000540109 NGDNQ8NEJ9 315 aaKnown RBP7.32□□□□□ -1.24
PTPRD-214ENST00000540109 IPO4Q8TEX9 1081 aaKnown RBP7.32□□□□□ -1.24
PTPRD-214ENST00000540109 LETM1O95202 739 aaPredicted RBP7.32□□□□□ -1.24
PTPRD-214ENST00000540109 MPNDQ8N594 471 aa7.32□□□□□ -1.24
PTPRD-214ENST00000540109 DEF6Q9H4E7 631 aa7.32□□□□□ -1.24
PTPRD-214ENST00000540109 CHD2O14647 1828 aaKnown RBP7.32□□□□□ -1.24
PTPRD-214ENST00000540109 KIF1AQ12756 1690 aa7.32□□□□□ -1.24
PTPRD-214ENST00000540109 CCAR2Q8N163 923 aaKnown RBP7.32□□□□□ -1.24
PTPRD-214ENST00000540109 CALCOCO1Q9P1Z2 691 aa7.32□□□□□ -1.24
PTPRD-214ENST00000540109 HSP90B1P14625 803 aaKnown RBP7.31□□□□□ -1.24
PTPRD-214ENST00000540109 GNL2Q13823 731 aaKnown RBP7.31□□□□□ -1.24
PTPRD-214ENST00000540109 COG6Q9Y2V7 657 aa7.31□□□□□ -1.24
PTPRD-214ENST00000540109 KDRP35968 1356 aa7.31□□□□□ -1.24
PTPRD-214ENST00000540109 DNAJC2Q99543 621 aaKnown RBP7.31□□□□□ -1.24
PTPRD-214ENST00000540109 CCP110O43303 1012 aa7.31□□□□□ -1.24
PTPRD-214ENST00000540109 DMRT2Q9Y5R5 561 aa7.31□□□□□ -1.24
PTPRD-214ENST00000540109 IGSF3O75054 1194 aa7.31□□□□□ -1.24
PTPRD-214ENST00000540109 KCNH5Q8NCM2 988 aa7.31□□□□□ -1.24
PTPRD-214ENST00000540109 EMILIN1Q9Y6C2 1016 aa7.31□□□□□ -1.24
PTPRD-214ENST00000540109 PHRF1Q9P1Y6 1649 aaKnown RBP7.31□□□□□ -1.24
PTPRD-214ENST00000540109 LMTK3Q96Q04 1460 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 SKIDA1Q1XH10 827 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 GCC1Q96CN9 775 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 ZFP91Q96JP5 570 aaPredicted RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 NPHP4O75161 1426 aaPredicted RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 PTPRCP08575 1304 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 TRHP20396 242 aaPredicted RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 GTF2A1P52655 376 aaPredicted RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 NUCB2P80303 420 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 RNF214Q8ND24 703 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 FOXD4L6Q3SYB3 417 aaPredicted RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 PPP4R3BQ5MIZ7 849 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 FOXD4L3Q6VB84 417 aaPredicted RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 NPHP1O15259 732 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 SOX12O15370 315 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 PANK1Q8TE04 598 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 SSH1Q8WYL5 1049 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 ERCC4Q92889 916 aaPredicted RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 TAOK2Q9UL54 1235 aa7.3□□□□□ -1.24
PTPRD-214ENST00000540109 RDXP35241 583 aaKnown RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 RTF1Q92541 710 aaKnown RBP7.3□□□□□ -1.24
PTPRD-214ENST00000540109 KIF2AO00139 706 aaPredicted RBP7.29□□□□□ -1.24
PTPRD-214ENST00000540109 MBD3O95983 291 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 CLCN1P35523 988 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 GTPBP4Q9BZE4 634 aaKnown RBP7.29□□□□□ -1.24
PTPRD-214ENST00000540109 RRAGDQ9NQL2 400 aaPredicted RBP7.29□□□□□ -1.24
PTPRD-214ENST00000540109 MST1RQ04912 1400 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 ABCC6O95255 1503 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 XPCQ01831 940 aaPredicted RBP7.29□□□□□ -1.24
PTPRD-214ENST00000540109 EIF4A2Q14240 407 aaKnown RBP7.29□□□□□ -1.24
PTPRD-214ENST00000540109 IGSF1Q8N6C5 1336 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 DCCP43146 1447 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 KIF20AO95235 890 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 ITPRIPQ8IWB1 547 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 PIK3C2AO00443 1686 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 PES1O00541 588 aaKnown RBP7.29□□□□□ -1.24
PTPRD-214ENST00000540109 TRIM27P14373 513 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 CDR1P51861 262 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 HS1BP3Q53T59 392 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 SLC26A8Q96RN1 970 aa7.29□□□□□ -1.24
PTPRD-214ENST00000540109 OVOS2A0A0G2JMS6 1433 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 AMPHP49418 695 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 RBM28Q9NW13 759 aaKnown RBP7.28□□□□□ -1.24
PTPRD-214ENST00000540109 TRIM6-TRIM34B2RNG4 842 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 TWISTNBQ3B726 338 aaPredicted RBP7.28□□□□□ -1.24
PTPRD-214ENST00000540109 ZSCAN30Q86W11 494 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 TRIM34Q9BYJ4 488 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 HDAC5Q9UQL6 1122 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 ABCC4O15439 1325 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 MRPL50Q8N5N7 158 aaKnown RBP7.28□□□□□ -1.24
PTPRD-214ENST00000540109 FAM184AQ8NB25 1140 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 NCAPD2Q15021 1401 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 KCNA6P17658 529 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 SMC5Q8IY18 1101 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 SMAP1Q8IYB5 467 aaPredicted RBP7.28□□□□□ -1.24
PTPRD-214ENST00000540109 TSR2Q969E8 191 aaKnown RBP7.28□□□□□ -1.24
PTPRD-214ENST00000540109 TIGD1Q96MW7 591 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 NOB1Q9ULX3 412 aaKnown RBP7.28□□□□□ -1.24
PTPRD-214ENST00000540109 LRRC37A3O60309 1634 aa7.28□□□□□ -1.24
PTPRD-214ENST00000540109 H0YHG0 523 aa7.27□□□□□ -1.25
PTPRD-214ENST00000540109 VAMP4O75379 141 aa7.27□□□□□ -1.25
PTPRD-214ENST00000540109 CEBPAP49715 358 aaPredicted RBP7.27□□□□□ -1.25
PTPRD-214ENST00000540109 PHF8Q9UPP1 1060 aa7.27□□□□□ -1.25
PTPRD-214ENST00000540109 NOL8Q76FK4 1167 aaKnown RBP7.27□□□□□ -1.25
PTPRD-214ENST00000540109 CHL1O00533 1208 aa7.27□□□□□ -1.25
PTPRD-214ENST00000540109 CCDC70Q6NSX1 233 aa7.27□□□□□ -1.25
PTPRD-214ENST00000540109 PEAK1Q9H792 1746 aa7.27□□□□□ -1.25
PTPRD-214ENST00000540109 ZBTB40Q9NUA8 1239 aa7.27□□□□□ -1.25
PTPRD-214ENST00000540109 TPM1P09493 284 aa7.26□□□□□ -1.25
PTPRD-214ENST00000540109 MBIPQ9NS73 344 aa7.26□□□□□ -1.25
PTPRD-214ENST00000540109 TUBB4AP04350 444 aa7.26□□□□□ -1.25
PTPRD-214ENST00000540109 HMOX1P09601 288 aa7.26□□□□□ -1.25
PTPRD-214ENST00000540109 IBSPP21815 317 aaPredicted RBP7.26□□□□□ -1.25
PTPRD-214ENST00000540109 MCTP1Q6DN14 999 aa7.26□□□□□ -1.25
PTPRD-214ENST00000540109 SULT6B1Q6IMI4 303 aa7.26□□□□□ -1.25
PTPRD-214ENST00000540109 AK7Q96M32 723 aa7.26□□□□□ -1.25
PTPRD-214ENST00000540109 PLCD4Q9BRC7 762 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms