RNA–Protein interactions for RNA: ENST00000539599.5

UBE3B-210, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best)

Gene UBE3B, Length 2,763 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-210ENST00000539599 KDRP35968 1356 aa17.33■□□□□ 0.37
UBE3B-210ENST00000539599 TTC21AQ8NDW8 1320 aa17.33■□□□□ 0.36
UBE3B-210ENST00000539599 KCNQ3O43525 872 aa17.33■□□□□ 0.36
UBE3B-210ENST00000539599 RILPL2Q969X0 211 aa17.33■□□□□ 0.36
UBE3B-210ENST00000539599 GRPEL1Q9HAV7 217 aa17.33■□□□□ 0.36
UBE3B-210ENST00000539599 GNAI2P04899 355 aa17.33■□□□□ 0.36
UBE3B-210ENST00000539599 GBP4Q96PP9 640 aa17.33■□□□□ 0.36
UBE3B-210ENST00000539599 IL25Q9H293 177 aa17.33■□□□□ 0.36
UBE3B-210ENST00000539599 EIF5BO60841 1220 aaKnown RBP17.32■□□□□ 0.36
UBE3B-210ENST00000539599 MCTP1Q6DN14 999 aa17.32■□□□□ 0.36
UBE3B-210ENST00000539599 LGR6Q9HBX8 967 aa17.32■□□□□ 0.36
UBE3B-210ENST00000539599 PALD1Q9ULE6 856 aa17.32■□□□□ 0.36
UBE3B-210ENST00000539599 DTNBO60941 627 aa17.32■□□□□ 0.36
UBE3B-210ENST00000539599 BAG4O95429 457 aaKnown RBP17.31■□□□□ 0.36
UBE3B-210ENST00000539599 RABEP1Q15276 862 aa17.31■□□□□ 0.36
UBE3B-210ENST00000539599 TRIM6-TRIM34B2RNG4 842 aa17.31■□□□□ 0.36
UBE3B-210ENST00000539599 CCT4P50991 539 aaKnown RBP17.31■□□□□ 0.36
UBE3B-210ENST00000539599 NUTM1Q86Y26 1132 aa17.31■□□□□ 0.36
UBE3B-210ENST00000539599 LRRC59Q96AG4 307 aaKnown RBP17.31■□□□□ 0.36
UBE3B-210ENST00000539599 CIZ1Q9ULV3 898 aaPredicted RBP17.31■□□□□ 0.36
UBE3B-210ENST00000539599 TBX22Q9Y458 520 aa17.31■□□□□ 0.36
UBE3B-210ENST00000539599 NCLP19338 710 aaKnown RBP17.3■□□□□ 0.36
UBE3B-210ENST00000539599 HAP1P54257 671 aaPredicted RBP17.3■□□□□ 0.36
UBE3B-210ENST00000539599 HMMRO75330 724 aa17.3■□□□□ 0.36
UBE3B-210ENST00000539599 FOXD4L6Q3SYB3 417 aaPredicted RBP17.29■□□□□ 0.36
UBE3B-210ENST00000539599 FOXD4L3Q6VB84 417 aaPredicted RBP17.29■□□□□ 0.36
UBE3B-210ENST00000539599 CCDC30Q5VVM6 783 aa17.28■□□□□ 0.36
UBE3B-210ENST00000539599 NBPF6Q5VWK0 638 aa17.28■□□□□ 0.36
UBE3B-210ENST00000539599 NBPF4Q96M43 638 aa17.28■□□□□ 0.36
UBE3B-210ENST00000539599 USP44Q9H0E7 712 aa17.28■□□□□ 0.36
UBE3B-210ENST00000539599 ERC2O15083 957 aa17.28■□□□□ 0.36
UBE3B-210ENST00000539599 HDGFL1Q5TGJ6 251 aa17.28■□□□□ 0.36
UBE3B-210ENST00000539599 LRRCC1Q9C099 1032 aa17.28■□□□□ 0.36
UBE3B-210ENST00000539599 DDX49Q9Y6V7 483 aaKnown RBP17.28■□□□□ 0.36
UBE3B-210ENST00000539599 MX1P20591 662 aa17.27■□□□□ 0.36
UBE3B-210ENST00000539599 NEK4P51957 841 aa17.27■□□□□ 0.36
UBE3B-210ENST00000539599 CASC1Q6TDU7 716 aa17.27■□□□□ 0.36
UBE3B-210ENST00000539599 NWD1Q149M9 1564 aa17.27■□□□□ 0.36
UBE3B-210ENST00000539599 MRE11P49959 708 aa17.27■□□□□ 0.35
UBE3B-210ENST00000539599 ANO2Q9NQ90 1003 aa17.27■□□□□ 0.35
UBE3B-210ENST00000539599 ZDHHC9Q9Y397 364 aa17.27■□□□□ 0.35
UBE3B-210ENST00000539599 ERBB4Q15303 1308 aa17.26■□□□□ 0.35
UBE3B-210ENST00000539599 MAP3K5Q99683 1374 aa17.26■□□□□ 0.35
UBE3B-210ENST00000539599 UPF3BQ9BZI7 483 aaKnown RBP17.26■□□□□ 0.35
UBE3B-210ENST00000539599 RBM27Q9P2N5 1060 aaKnown RBP17.26■□□□□ 0.35
UBE3B-210ENST00000539599 NBPF7P0C2Y1 421 aaPredicted RBP17.26■□□□□ 0.35
UBE3B-210ENST00000539599 TAF7Q15545 349 aaPredicted RBP17.26■□□□□ 0.35
UBE3B-210ENST00000539599 THEMISQ8N1K5 641 aaPredicted RBP17.26■□□□□ 0.35
UBE3B-210ENST00000539599 LARP6Q9BRS8 491 aaKnown RBP17.26■□□□□ 0.35
UBE3B-210ENST00000539599 LMOD2Q6P5Q4 547 aa17.25■□□□□ 0.35
UBE3B-210ENST00000539599 MPRIPQ6WCQ1 1025 aa17.25■□□□□ 0.35
UBE3B-210ENST00000539599 CHPF2Q9P2E5 772 aa17.25■□□□□ 0.35
UBE3B-210ENST00000539599 SALL3Q9BXA9 1300 aa17.25■□□□□ 0.35
UBE3B-210ENST00000539599 PRAMEF22A3QJZ6 481 aa17.25■□□□□ 0.35
UBE3B-210ENST00000539599 ATP8B2P98198 1209 aa17.25■□□□□ 0.35
UBE3B-210ENST00000539599 TPRNQ4KMQ1 711 aa17.24■□□□□ 0.35
UBE3B-210ENST00000539599 CAVIN1Q6NZI2 390 aaKnown RBP17.24■□□□□ 0.35
UBE3B-210ENST00000539599 ESYT1Q9BSJ8 1104 aa17.24■□□□□ 0.35
UBE3B-210ENST00000539599 MARF1Q9Y4F3 1742 aaKnown RBP17.23■□□□□ 0.35
UBE3B-210ENST00000539599 REC8O95072 547 aa17.23■□□□□ 0.35
UBE3B-210ENST00000539599 UBTFL1P0CB47 393 aaPredicted RBP17.23■□□□□ 0.35
UBE3B-210ENST00000539599 ESCO1Q5FWF5 840 aa17.23■□□□□ 0.35
UBE3B-210ENST00000539599 PPP1R42Q7Z4L9 355 aa17.23■□□□□ 0.35
UBE3B-210ENST00000539599 NSFL1CQ9UNZ2 370 aaKnown RBP17.23■□□□□ 0.35
UBE3B-210ENST00000539599 PRPF40AO75400 957 aaKnown RBP17.23■□□□□ 0.35
UBE3B-210ENST00000539599 ARHGAP23Q9P227 1491 aa17.23■□□□□ 0.35
UBE3B-210ENST00000539599 FAM208AQ9UK61 1670 aaKnown RBP17.23■□□□□ 0.35
UBE3B-210ENST00000539599 ST18O60284 1047 aa17.23■□□□□ 0.35
UBE3B-210ENST00000539599 SURF6O75683 361 aaKnown RBP17.23■□□□□ 0.35
UBE3B-210ENST00000539599 PHF8Q9UPP1 1060 aa17.23■□□□□ 0.35
UBE3B-210ENST00000539599 IBTKQ9P2D0 1353 aaPredicted RBP17.22■□□□□ 0.35
UBE3B-210ENST00000539599 CHMLP26374 656 aa17.22■□□□□ 0.35
UBE3B-210ENST00000539599 OSBPL3Q9H4L5 887 aa17.22■□□□□ 0.35
UBE3B-210ENST00000539599 SLIT1O75093 1534 aa17.22■□□□□ 0.35
UBE3B-210ENST00000539599 PI4KAP2A4QPH2 592 aa17.22■□□□□ 0.35
UBE3B-210ENST00000539599 GNAI3P08754 354 aa17.22■□□□□ 0.35
UBE3B-210ENST00000539599 PI4KAP1Q8N8J0 262 aa17.22■□□□□ 0.35
UBE3B-210ENST00000539599 TMX3Q96JJ7 454 aa17.22■□□□□ 0.35
UBE3B-210ENST00000539599 XRN1Q8IZH2 1706 aaKnown RBP17.21■□□□□ 0.35
UBE3B-210ENST00000539599 SOS1Q07889 1333 aaPredicted RBP17.21■□□□□ 0.35
UBE3B-210ENST00000539599 CYP2E1P05181 493 aaPredicted RBP17.21■□□□□ 0.35
UBE3B-210ENST00000539599 LMBRD1Q9NUN5 540 aa17.21■□□□□ 0.35
UBE3B-210ENST00000539599 SRGAP3O43295 1099 aa17.2■□□□□ 0.34
UBE3B-210ENST00000539599 PROSER3Q2NL68 480 aa17.2■□□□□ 0.34
UBE3B-210ENST00000539599 GPT2Q8TD30 523 aa17.19■□□□□ 0.34
UBE3B-210ENST00000539599 ORAI2Q96SN7 254 aa17.19■□□□□ 0.34
UBE3B-210ENST00000539599 GOLGA6L22H0YM25 854 aa17.19■□□□□ 0.34
UBE3B-210ENST00000539599 EIF4A1P60842 406 aaKnown RBP17.19■□□□□ 0.34
UBE3B-210ENST00000539599 LRRC37A3O60309 1634 aa17.19■□□□□ 0.34
UBE3B-210ENST00000539599 PSME1Q06323 249 aa17.18■□□□□ 0.34
UBE3B-210ENST00000539599 GDPD2Q9HCC8 539 aa17.18■□□□□ 0.34
UBE3B-210ENST00000539599 RGPD2P0DJD1 1756 aa17.18■□□□□ 0.34
UBE3B-210ENST00000539599 CPA1P15085 419 aa17.17■□□□□ 0.34
UBE3B-210ENST00000539599 KLHL40Q2TBA0 621 aa17.17■□□□□ 0.34
UBE3B-210ENST00000539599 ZNF530Q6P9A1 599 aaPredicted RBP17.17■□□□□ 0.34
UBE3B-210ENST00000539599 SRCIN1Q9C0H9 1055 aa17.17■□□□□ 0.34
UBE3B-210ENST00000539599 FER1L4A9Z1Z3 1794 aa17.17■□□□□ 0.34
UBE3B-210ENST00000539599 HTATSF1O43719 755 aaKnown RBP17.17■□□□□ 0.34
UBE3B-210ENST00000539599 SKOR2Q2VWA4 1001 aaPredicted RBP17.17■□□□□ 0.34
UBE3B-210ENST00000539599 DDX54Q8TDD1 881 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms