RNA–Protein interactions for RNA: ENST00000539534.5

LMO3-221, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 543 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-221ENST00000539534 TRMT2AQ8IZ69 625 aaKnown RBP16.18■□□□□ 0.18
LMO3-221ENST00000539534 NFATC2IPQ8NCF5 419 aa16.18■□□□□ 0.18
LMO3-221ENST00000539534 CFAP44Q96MT7 982 aa16.18■□□□□ 0.18
LMO3-221ENST00000539534 CHL1O00533 1208 aa16.17■□□□□ 0.18
LMO3-221ENST00000539534 CABP4P57796 275 aa16.17■□□□□ 0.18
LMO3-221ENST00000539534 SLFN5Q08AF3 891 aa16.17■□□□□ 0.18
LMO3-221ENST00000539534 TAF7Q15545 349 aaPredicted RBP16.17■□□□□ 0.18
LMO3-221ENST00000539534 PIGBQ92521 554 aa16.17■□□□□ 0.18
LMO3-221ENST00000539534 SIPA1L3O60292 1781 aaPredicted RBP16.17■□□□□ 0.18
LMO3-221ENST00000539534 SOS1Q07889 1333 aaPredicted RBP16.17■□□□□ 0.18
LMO3-221ENST00000539534 KCNQ2O43526 872 aa16.16■□□□□ 0.18
LMO3-221ENST00000539534 TEFQ10587 303 aa16.16■□□□□ 0.18
LMO3-221ENST00000539534 CHMP4AQ9BY43 222 aa16.16■□□□□ 0.18
LMO3-221ENST00000539534 ZNF428Q96B54 188 aa16.15■□□□□ 0.18
LMO3-221ENST00000539534 BCL11BQ9C0K0 894 aaPredicted RBP16.15■□□□□ 0.18
LMO3-221ENST00000539534 ACSBG1Q96GR2 724 aa16.14■□□□□ 0.17
LMO3-221ENST00000539534 SPINK5Q9NQ38 1064 aaPredicted RBP16.14■□□□□ 0.17
LMO3-221ENST00000539534 TMOD3Q9NYL9 352 aa16.14■□□□□ 0.17
LMO3-221ENST00000539534 DUSP27Q5VZP5 1158 aa16.13■□□□□ 0.17
LMO3-221ENST00000539534 PTF1AQ7RTS3 328 aa16.13■□□□□ 0.17
LMO3-221ENST00000539534 BRWD3Q6RI45 1802 aa16.12■□□□□ 0.17
LMO3-221ENST00000539534 BTBD11A6QL63 1104 aa16.12■□□□□ 0.17
LMO3-221ENST00000539534 KDM3BQ7LBC6 1761 aa16.11■□□□□ 0.17
LMO3-221ENST00000539534 SYTL4Q96C24 671 aaPredicted RBP16.11■□□□□ 0.17
LMO3-221ENST00000539534 ATG3Q9NT62 314 aa16.11■□□□□ 0.17
LMO3-221ENST00000539534 MIS18AQ9NYP9 233 aa16.11■□□□□ 0.17
LMO3-221ENST00000539534 ZNF790Q6PG37 636 aa16.1■□□□□ 0.17
LMO3-221ENST00000539534 CDCA7LQ96GN5 454 aa16.1■□□□□ 0.17
LMO3-221ENST00000539534 MBIPQ9NS73 344 aa16.1■□□□□ 0.17
LMO3-221ENST00000539534 ASAP1Q9ULH1 1129 aa16.1■□□□□ 0.17
LMO3-221ENST00000539534 FANCIQ9NVI1 1328 aa16.1■□□□□ 0.17
LMO3-221ENST00000539534 TOGARAM1Q9Y4F4 1720 aa16.1■□□□□ 0.17
LMO3-221ENST00000539534 TRIM37O94972 964 aa16.09■□□□□ 0.17
LMO3-221ENST00000539534 TSPYL4Q9UJ04 414 aa16.09■□□□□ 0.17
LMO3-221ENST00000539534 HEG1Q9ULI3 1381 aa16.09■□□□□ 0.17
LMO3-221ENST00000539534 KCNQ3O43525 872 aa16.08■□□□□ 0.16
LMO3-221ENST00000539534 HOXB7P09629 217 aa16.08■□□□□ 0.16
LMO3-221ENST00000539534 SLC39A6Q13433 755 aa16.08■□□□□ 0.16
LMO3-221ENST00000539534 SMARCC1Q92922 1105 aaPredicted RBP16.08■□□□□ 0.16
LMO3-221ENST00000539534 PAPPAQ13219 1627 aa16.08■□□□□ 0.16
LMO3-221ENST00000539534 EIF4A1P60842 406 aaKnown RBP16.07■□□□□ 0.16
LMO3-221ENST00000539534 LAS1LQ9Y4W2 734 aaKnown RBP16.07■□□□□ 0.16
LMO3-221ENST00000539534 ITGB4P16144 1822 aa16.07■□□□□ 0.16
LMO3-221ENST00000539534 DOT1LQ8TEK3 1739 aa16.06■□□□□ 0.16
LMO3-221ENST00000539534 PLSCR1O15162 318 aa16.06■□□□□ 0.16
LMO3-221ENST00000539534 ILDR2Q71H61 639 aa16.06■□□□□ 0.16
LMO3-221ENST00000539534 CCDC125Q86Z20 511 aa16.06■□□□□ 0.16
LMO3-221ENST00000539534 TSR2Q969E8 191 aaKnown RBP16.06■□□□□ 0.16
LMO3-221ENST00000539534 CACNA1FO60840 1977 aa16.06■□□□□ 0.16
LMO3-221ENST00000539534 UBR2Q8IWV8 1755 aa16.05■□□□□ 0.16
LMO3-221ENST00000539534 NHSQ6T4R5 1651 aa16.05■□□□□ 0.16
LMO3-221ENST00000539534 HMGB2P26583 209 aaKnown RBP16.05■□□□□ 0.16
LMO3-221ENST00000539534 TTC5Q8N0Z6 440 aa16.05■□□□□ 0.16
LMO3-221ENST00000539534 VSIG10Q8N0Z9 540 aa16.05■□□□□ 0.16
LMO3-221ENST00000539534 ZNF496Q96IT1 587 aaPredicted RBP16.05■□□□□ 0.16
LMO3-221ENST00000539534 FMNL2Q96PY5 1086 aa16.04■□□□□ 0.16
LMO3-221ENST00000539534 SLC4A9Q96Q91 983 aa16.04■□□□□ 0.16
LMO3-221ENST00000539534 PALLDQ8WX93 1383 aa16.03■□□□□ 0.16
LMO3-221ENST00000539534 GIGYF1O75420 1035 aaPredicted RBP16.03■□□□□ 0.16
LMO3-221ENST00000539534 KCPQ6ZWJ8 1503 aa16.03■□□□□ 0.16
LMO3-221ENST00000539534 ZNF831Q5JPB2 1677 aa16.02■□□□□ 0.16
LMO3-221ENST00000539534 CICQ96RK0 1608 aaPredicted RBP16.02■□□□□ 0.16
LMO3-221ENST00000539534 LOC102724428A0A0B4J2F2 783 aa16.02■□□□□ 0.16
LMO3-221ENST00000539534 APBA3O96018 575 aa16.02■□□□□ 0.16
LMO3-221ENST00000539534 SIK1P57059 783 aa16.02■□□□□ 0.16
LMO3-221ENST00000539534 ALDH1L2Q3SY69 923 aa16.02■□□□□ 0.16
LMO3-221ENST00000539534 PROM2Q8N271 834 aa16.02■□□□□ 0.16
LMO3-221ENST00000539534 C8orf58Q8NAV2 365 aa16.02■□□□□ 0.16
LMO3-221ENST00000539534 SBF2Q86WG5 1849 aa16.01■□□□□ 0.15
LMO3-221ENST00000539534 PTCD1O75127 700 aaKnown RBP16.01■□□□□ 0.15
LMO3-221ENST00000539534 SNRPA1P09661 255 aaKnown RBP16.01■□□□□ 0.15
LMO3-221ENST00000539534 BRPF1P55201 1214 aaPredicted RBP16.01■□□□□ 0.15
LMO3-221ENST00000539534 EXOSC9Q06265 439 aaKnown RBP16.01■□□□□ 0.15
LMO3-221ENST00000539534 KRT24Q2M2I5 525 aa16■□□□□ 0.15
LMO3-221ENST00000539534 TSPYL6Q8N831 410 aa16■□□□□ 0.15
LMO3-221ENST00000539534 UPF1Q92900 1129 aaKnown RBP eCLIP16■□□□□ 0.15
LMO3-221ENST00000539534 CAMKK2Q96RR4 588 aa16■□□□□ 0.15
LMO3-221ENST00000539534 RCAN3Q9UKA8 241 aa16■□□□□ 0.15
LMO3-221ENST00000539534 KAT6BQ8WYB5 2073 aa15.99■□□□□ 0.15
LMO3-221ENST00000539534 VAMP4O75379 141 aa15.99■□□□□ 0.15
LMO3-221ENST00000539534 TWISTNBQ3B726 338 aaPredicted RBP15.99■□□□□ 0.15
LMO3-221ENST00000539534 SLC27A3Q5K4L6 730 aa15.99■□□□□ 0.15
LMO3-221ENST00000539534 TEX13AQ9BXU3 409 aaPredicted RBP15.99■□□□□ 0.15
LMO3-221ENST00000539534 LAMB4A4D0S4 1761 aa15.99■□□□□ 0.15
LMO3-221ENST00000539534 ITPK1Q13572 414 aa15.98■□□□□ 0.15
LMO3-221ENST00000539534 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.98■□□□□ 0.15
LMO3-221ENST00000539534 RBM42Q9BTD8 480 aaKnown RBP15.98■□□□□ 0.15
LMO3-221ENST00000539534 ERBB4Q15303 1308 aa15.97■□□□□ 0.15
LMO3-221ENST00000539534 PRAMEF22A3QJZ6 481 aa15.97■□□□□ 0.15
LMO3-221ENST00000539534 ATP6V1AP38606 617 aa15.97■□□□□ 0.15
LMO3-221ENST00000539534 TXNRD1Q16881 649 aa15.97■□□□□ 0.15
LMO3-221ENST00000539534 LRRC4BQ9NT99 713 aa15.97■□□□□ 0.15
LMO3-221ENST00000539534 USP16Q9Y5T5 823 aa15.97■□□□□ 0.15
LMO3-221ENST00000539534 KIF16BQ96L93 1317 aa15.96■□□□□ 0.15
LMO3-221ENST00000539534 BTAF1O14981 1849 aa15.96■□□□□ 0.15
LMO3-221ENST00000539534 CYP19A1P11511 503 aaPredicted RBP15.96■□□□□ 0.15
LMO3-221ENST00000539534 SF3B2Q13435 895 aaKnown RBP15.96■□□□□ 0.15
LMO3-221ENST00000539534 DNAJC10Q8IXB1 793 aa15.96■□□□□ 0.15
LMO3-221ENST00000539534 CCNL1Q9UK58 526 aaPredicted RBP15.96■□□□□ 0.15
LMO3-221ENST00000539534 RNF123Q5XPI4 1314 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms