RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 LTN1O94822 1766 aa9.86□□□□□ -0.83
LMO3-220ENST00000539232 PRDM10Q9NQV6 1147 aa9.86□□□□□ -0.83
LMO3-220ENST00000539232 SMIM5Q71RC9 77 aa9.85□□□□□ -0.83
LMO3-220ENST00000539232 HMOX1P09601 288 aa9.84□□□□□ -0.83
LMO3-220ENST00000539232 PHKG2P15735 406 aa9.84□□□□□ -0.83
LMO3-220ENST00000539232 SULT6B1Q6IMI4 303 aa9.84□□□□□ -0.83
LMO3-220ENST00000539232 PIGBQ92521 554 aa9.84□□□□□ -0.83
LMO3-220ENST00000539232 C10orf71Q711Q0 1435 aa9.83□□□□□ -0.84
LMO3-220ENST00000539232 RGS19P49795 217 aa9.83□□□□□ -0.84
LMO3-220ENST00000539232 NKX1-1Q15270 411 aaPredicted RBP9.83□□□□□ -0.84
LMO3-220ENST00000539232 MPRIPQ6WCQ1 1025 aa9.83□□□□□ -0.84
LMO3-220ENST00000539232 AMIGO3Q86WK7 504 aa9.83□□□□□ -0.84
LMO3-220ENST00000539232 SMC1BQ8NDV3 1235 aa9.83□□□□□ -0.84
LMO3-220ENST00000539232 PDE4DIPQ5VU43 2346 aa9.83□□□□□ -0.84
LMO3-220ENST00000539232 PCDH11XQ9BZA7 1347 aa9.82□□□□□ -0.84
LMO3-220ENST00000539232 PCDH11YQ9BZA8 1340 aa9.82□□□□□ -0.84
LMO3-220ENST00000539232 KIF20BQ96Q89 1820 aa9.82□□□□□ -0.84
LMO3-220ENST00000539232 MSH5O43196 834 aa9.82□□□□□ -0.84
LMO3-220ENST00000539232 PPP2R1AP30153 589 aa9.82□□□□□ -0.84
LMO3-220ENST00000539232 ASAP1Q9ULH1 1129 aa9.82□□□□□ -0.84
LMO3-220ENST00000539232 NPC1L1Q9UHC9 1359 aa9.82□□□□□ -0.84
LMO3-220ENST00000539232 MSL1Q68DK7 614 aa9.81□□□□□ -0.84
LMO3-220ENST00000539232 ZNF530Q6P9A1 599 aaPredicted RBP9.81□□□□□ -0.84
LMO3-220ENST00000539232 COL23A1Q86Y22 540 aaPredicted RBP9.81□□□□□ -0.84
LMO3-220ENST00000539232 ABHD8Q96I13 439 aa9.81□□□□□ -0.84
LMO3-220ENST00000539232 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.81□□□□□ -0.84
LMO3-220ENST00000539232 SPG7Q9UQ90 795 aa9.81□□□□□ -0.84
LMO3-220ENST00000539232 RGPD2P0DJD1 1756 aa9.8□□□□□ -0.84
LMO3-220ENST00000539232 COL3A1P02461 1466 aaPredicted RBP9.8□□□□□ -0.84
LMO3-220ENST00000539232 FOXN1O15353 648 aa9.8□□□□□ -0.84
LMO3-220ENST00000539232 DDX10Q13206 875 aaKnown RBP9.8□□□□□ -0.84
LMO3-220ENST00000539232 SLC4A9Q96Q91 983 aa9.8□□□□□ -0.84
LMO3-220ENST00000539232 KDM6AO15550 1401 aaPredicted RBP9.8□□□□□ -0.84
LMO3-220ENST00000539232 KDM2BQ8NHM5 1336 aa9.8□□□□□ -0.84
LMO3-220ENST00000539232 KDRP35968 1356 aa9.79□□□□□ -0.84
LMO3-220ENST00000539232 PLEKHG2Q9H7P9 1386 aa9.79□□□□□ -0.84
LMO3-220ENST00000539232 DIAPH1O60610 1272 aaKnown RBP9.79□□□□□ -0.84
LMO3-220ENST00000539232 ITPK1Q13572 414 aa9.79□□□□□ -0.84
LMO3-220ENST00000539232 MTHFSDQ2M296 383 aaKnown RBP9.79□□□□□ -0.84
LMO3-220ENST00000539232 IFNL2Q8IZJ0 200 aa9.79□□□□□ -0.84
LMO3-220ENST00000539232 PHACTR3Q96KR7 559 aa9.79□□□□□ -0.84
LMO3-220ENST00000539232 LGR6Q9HBX8 967 aa9.79□□□□□ -0.84
LMO3-220ENST00000539232 ATG3Q9NT62 314 aa9.79□□□□□ -0.84
LMO3-220ENST00000539232 CCNL1Q9UK58 526 aaPredicted RBP9.79□□□□□ -0.84
LMO3-220ENST00000539232 PXDNLA1KZ92 1463 aa9.79□□□□□ -0.84
LMO3-220ENST00000539232 PALLDQ8WX93 1383 aa9.78□□□□□ -0.84
LMO3-220ENST00000539232 TNRC6CQ9HCJ0 1690 aaKnown RBP9.78□□□□□ -0.84
LMO3-220ENST00000539232 U2SURPO15042 1029 aaKnown RBP9.78□□□□□ -0.84
LMO3-220ENST00000539232 CTCFP49711 727 aaPredicted RBP9.78□□□□□ -0.84
LMO3-220ENST00000539232 PLEKHO1Q53GL0 409 aaPredicted RBP9.78□□□□□ -0.84
LMO3-220ENST00000539232 ANKRD26Q9UPS8 1709 aa9.78□□□□□ -0.84
LMO3-220ENST00000539232 LY75O60449 1722 aa9.77□□□□□ -0.85
LMO3-220ENST00000539232 LINC00116Q8NCU8 138 aa9.77□□□□□ -0.85
LMO3-220ENST00000539232 FLAD1Q8NFF5 587 aa9.76□□□□□ -0.85
LMO3-220ENST00000539232 DCAF5Q96JK2 942 aa9.76□□□□□ -0.85
LMO3-220ENST00000539232 RRAGCQ9HB90 399 aa9.76□□□□□ -0.85
LMO3-220ENST00000539232 TMOD3Q9NYL9 352 aa9.76□□□□□ -0.85
LMO3-220ENST00000539232 KCPQ6ZWJ8 1503 aa9.76□□□□□ -0.85
LMO3-220ENST00000539232 LOC102724428A0A0B4J2F2 783 aa9.75□□□□□ -0.85
LMO3-220ENST00000539232 SIK1P57059 783 aa9.75□□□□□ -0.85
LMO3-220ENST00000539232 AMOTQ4VCS5 1084 aa9.75□□□□□ -0.85
LMO3-220ENST00000539232 NFATC2IPQ8NCF5 419 aa9.75□□□□□ -0.85
LMO3-220ENST00000539232 AIDAQ96BJ3 306 aa9.75□□□□□ -0.85
LMO3-220ENST00000539232 RSPH6AQ9H0K4 717 aa9.75□□□□□ -0.85
LMO3-220ENST00000539232 PKD1L3Q7Z443 1732 aa9.75□□□□□ -0.85
LMO3-220ENST00000539232 PRKAR2BP31323 418 aa9.74□□□□□ -0.85
LMO3-220ENST00000539232 CABP4P57796 275 aa9.74□□□□□ -0.85
LMO3-220ENST00000539232 SLC39A6Q13433 755 aa9.74□□□□□ -0.85
LMO3-220ENST00000539232 C9orf131Q5VYM1 1079 aa9.74□□□□□ -0.85
LMO3-220ENST00000539232 ARHGAP27Q6ZUM4 889 aa9.74□□□□□ -0.85
LMO3-220ENST00000539232 IL17REQ8NFR9 667 aa9.74□□□□□ -0.85
LMO3-220ENST00000539232 TOGARAM1Q9Y4F4 1720 aa9.73□□□□□ -0.85
LMO3-220ENST00000539232 CCDC85CA6NKD9 419 aa9.73□□□□□ -0.85
LMO3-220ENST00000539232 ERVV-2B6SEH9 535 aa9.73□□□□□ -0.85
LMO3-220ENST00000539232 RNMTO43148 476 aaKnown RBP9.73□□□□□ -0.85
LMO3-220ENST00000539232 PTCD1O75127 700 aaKnown RBP9.73□□□□□ -0.85
LMO3-220ENST00000539232 HMGB2P26583 209 aaKnown RBP9.73□□□□□ -0.85
LMO3-220ENST00000539232 C1orf141Q5JVX7 400 aa9.73□□□□□ -0.85
LMO3-220ENST00000539232 RBM42Q9BTD8 480 aaKnown RBP9.73□□□□□ -0.85
LMO3-220ENST00000539232 TNRC18O15417 2968 aaPredicted RBP9.72□□□□□ -0.85
LMO3-220ENST00000539232 KCNQ3O43525 872 aa9.72□□□□□ -0.85
LMO3-220ENST00000539232 U2AF1L5P0DN76 240 aaPredicted RBP9.72□□□□□ -0.85
LMO3-220ENST00000539232 LBX1P52954 281 aa9.72□□□□□ -0.85
LMO3-220ENST00000539232 U2AF1Q01081 240 aaKnown RBP eCLIP9.72□□□□□ -0.85
LMO3-220ENST00000539232 AKAP4Q5JQC9 854 aa9.72□□□□□ -0.85
LMO3-220ENST00000539232 SMARCC1Q92922 1105 aaPredicted RBP9.72□□□□□ -0.85
LMO3-220ENST00000539232 BCS1LQ9Y276 419 aa9.72□□□□□ -0.85
LMO3-220ENST00000539232 DOT1LQ8TEK3 1739 aa9.71□□□□□ -0.85
LMO3-220ENST00000539232 MAP2P11137 1827 aaKnown RBP9.71□□□□□ -0.85
LMO3-220ENST00000539232 PHF14O94880 888 aa9.71□□□□□ -0.86
LMO3-220ENST00000539232 ATP6V1AP38606 617 aa9.71□□□□□ -0.86
LMO3-220ENST00000539232 DCTN1Q14203 1278 aa9.71□□□□□ -0.86
LMO3-220ENST00000539232 SLC52A2Q9HAB3 445 aa9.71□□□□□ -0.86
LMO3-220ENST00000539232 CREBZFQ9NS37 354 aa9.71□□□□□ -0.86
LMO3-220ENST00000539232 KIF13BQ9NQT8 1826 aa9.7□□□□□ -0.86
LMO3-220ENST00000539232 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.7□□□□□ -0.86
LMO3-220ENST00000539232 HSP90AB1P08238 724 aaKnown RBP9.7□□□□□ -0.86
LMO3-220ENST00000539232 CFAP53Q96M91 514 aa9.7□□□□□ -0.86
LMO3-220ENST00000539232 MKRN1Q9UHC7 482 aaKnown RBP9.7□□□□□ -0.86
LMO3-220ENST00000539232 GNPATO15228 680 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms