RNA–Protein interactions for RNA: ENST00000538987.1

LPCAT3-208, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 3

Gene LPCAT3, Length 527 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-208ENST00000538987 BCL11BQ9C0K0 894 aaPredicted RBP11.18□□□□□ -0.62
LPCAT3-208ENST00000538987 IFT57Q9NWB7 429 aa11.18□□□□□ -0.62
LPCAT3-208ENST00000538987 IL16Q14005 1332 aa11.17□□□□□ -0.62
LPCAT3-208ENST00000538987 E9PSI1 815 aa11.17□□□□□ -0.62
LPCAT3-208ENST00000538987 SF3B2Q13435 895 aaKnown RBP11.17□□□□□ -0.62
LPCAT3-208ENST00000538987 TSR2Q969E8 191 aaKnown RBP11.17□□□□□ -0.62
LPCAT3-208ENST00000538987 ZNF521Q96K83 1311 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 CHL1O00533 1208 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 PTCD1O75127 700 aaKnown RBP11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 APBA3O96018 575 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 SLFN5Q08AF3 891 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 ZNF790Q6PG37 636 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 RBM42Q9BTD8 480 aaKnown RBP11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 SPINK5Q9NQ38 1064 aaPredicted RBP11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 MBIPQ9NS73 344 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 ATG3Q9NT62 314 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 BABAM1Q9NWV8 329 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 ASAP1Q9ULH1 1129 aa11.16□□□□□ -0.62
LPCAT3-208ENST00000538987 KCNQ3O43525 872 aa11.15□□□□□ -0.62
LPCAT3-208ENST00000538987 PTF1AQ7RTS3 328 aa11.15□□□□□ -0.62
LPCAT3-208ENST00000538987 SMARCC1Q92922 1105 aaPredicted RBP11.15□□□□□ -0.62
LPCAT3-208ENST00000538987 SHANK3Q9BYB0 1731 aa11.15□□□□□ -0.63
LPCAT3-208ENST00000538987 ELL2O00472 640 aaPredicted RBP11.14□□□□□ -0.63
LPCAT3-208ENST00000538987 ZNF853P0CG23 659 aa11.14□□□□□ -0.63
LPCAT3-208ENST00000538987 FMNL2Q96PY5 1086 aa11.14□□□□□ -0.63
LPCAT3-208ENST00000538987 BCL9O00512 1426 aa11.14□□□□□ -0.63
LPCAT3-208ENST00000538987 BRWD3Q6RI45 1802 aa11.14□□□□□ -0.63
LPCAT3-208ENST00000538987 DLG5Q8TDM6 1919 aa11.13□□□□□ -0.63
LPCAT3-208ENST00000538987 FANCIQ9NVI1 1328 aa11.13□□□□□ -0.63
LPCAT3-208ENST00000538987 EXOSC9Q06265 439 aaKnown RBP11.13□□□□□ -0.63
LPCAT3-208ENST00000538987 EIF4A1P60842 406 aaKnown RBP11.12□□□□□ -0.63
LPCAT3-208ENST00000538987 ZNF496Q96IT1 587 aaPredicted RBP11.12□□□□□ -0.63
LPCAT3-208ENST00000538987 SNRPA1P09661 255 aaKnown RBP11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 EIF2S2P20042 333 aaKnown RBP11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 ATP6V1AP38606 617 aa11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 DUSP27Q5VZP5 1158 aa11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 CCDC125Q86Z20 511 aa11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 C8orf58Q8NAV2 365 aa11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 KAT6BQ8WYB5 2073 aa11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 PALLDQ8WX93 1383 aa11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 SCN11AQ9UI33 1791 aa11.11□□□□□ -0.63
LPCAT3-208ENST00000538987 DOT1LQ8TEK3 1739 aa11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 LOC102724428A0A0B4J2F2 783 aa11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 BAG6P46379 1132 aa11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 SIK1P57059 783 aa11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 KRT24Q2M2I5 525 aa11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 TWISTNBQ3B726 338 aaPredicted RBP11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 ILDR2Q71H61 639 aa11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 TRMT2AQ8IZ69 625 aaKnown RBP11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 NECTIN2Q92692 538 aa11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 TEX13AQ9BXU3 409 aaPredicted RBP11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 CCNL1Q9UK58 526 aaPredicted RBP11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 MRC1P22897 1456 aa11.1□□□□□ -0.63
LPCAT3-208ENST00000538987 GIGYF1O75420 1035 aaPredicted RBP11.09□□□□□ -0.63
LPCAT3-208ENST00000538987 KCNQ4P56696 695 aa11.09□□□□□ -0.63
LPCAT3-208ENST00000538987 EN1Q05925 392 aaPredicted RBP11.09□□□□□ -0.63
LPCAT3-208ENST00000538987 TSPYL6Q8N831 410 aa11.09□□□□□ -0.63
LPCAT3-208ENST00000538987 CHMP4AQ9BY43 222 aa11.09□□□□□ -0.63
LPCAT3-208ENST00000538987 TOGARAM1Q9Y4F4 1720 aa11.09□□□□□ -0.63
LPCAT3-208ENST00000538987 ADAMTS7Q9UKP4 1686 aa11.08□□□□□ -0.64
LPCAT3-208ENST00000538987 HEG1Q9ULI3 1381 aa11.08□□□□□ -0.64
LPCAT3-208ENST00000538987 PLSCR1O15162 318 aa11.08□□□□□ -0.64
LPCAT3-208ENST00000538987 STARD3NLO95772 234 aa11.08□□□□□ -0.64
LPCAT3-208ENST00000538987 TXNRD1Q16881 649 aa11.08□□□□□ -0.64
LPCAT3-208ENST00000538987 DNAJC10Q8IXB1 793 aa11.08□□□□□ -0.64
LPCAT3-208ENST00000538987 VSIG10Q8N0Z9 540 aa11.08□□□□□ -0.64
LPCAT3-208ENST00000538987 PRAMEF22A3QJZ6 481 aa11.07□□□□□ -0.64
LPCAT3-208ENST00000538987 TCERG1O14776 1098 aaKnown RBP11.07□□□□□ -0.64
LPCAT3-208ENST00000538987 HMGB2P26583 209 aaKnown RBP11.07□□□□□ -0.64
LPCAT3-208ENST00000538987 HDGFL1Q5TGJ6 251 aa11.07□□□□□ -0.64
LPCAT3-208ENST00000538987 DEFB132Q7Z7B7 95 aa11.07□□□□□ -0.64
LPCAT3-208ENST00000538987 NPM2Q86SE8 214 aaKnown RBP11.07□□□□□ -0.64
LPCAT3-208ENST00000538987 USP16Q9Y5T5 823 aa11.07□□□□□ -0.64
LPCAT3-208ENST00000538987 NHSQ6T4R5 1651 aa11.07□□□□□ -0.64
LPCAT3-208ENST00000538987 VAMP4O75379 141 aa11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 CENPBP07199 599 aaPredicted RBP11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 EZH2Q15910 746 aaKnown RBP11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 SLC27A3Q5K4L6 730 aa11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 CCDC30Q5VVM6 783 aa11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 UPF1Q92900 1129 aaKnown RBP eCLIP11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 SLC4A9Q96Q91 983 aa11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 ARXQ96QS3 562 aa11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 STK31Q9BXU1 1019 aa11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 ITGB4P16144 1822 aa11.06□□□□□ -0.64
LPCAT3-208ENST00000538987 HOXB7P09629 217 aa11.05□□□□□ -0.64
LPCAT3-208ENST00000538987 CT47B1P0C2W7 299 aaPredicted RBP11.05□□□□□ -0.64
LPCAT3-208ENST00000538987 ITPK1Q13572 414 aa11.05□□□□□ -0.64
LPCAT3-208ENST00000538987 ZNF330Q9Y3S2 320 aaPredicted RBP11.05□□□□□ -0.64
LPCAT3-208ENST00000538987 SOS1Q07889 1333 aaPredicted RBP11.05□□□□□ -0.64
LPCAT3-208ENST00000538987 A1BGP04217 495 aa11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 CYP19A1P11511 503 aaPredicted RBP11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 MYL6BP14649 208 aa11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 CANXP27824 592 aaKnown RBP11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 PROM2Q8N271 834 aa11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 CAMKK2Q96RR4 588 aa11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 LRRC4BQ9NT99 713 aa11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 DBF4Q9UBU7 674 aaPredicted RBP11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 VIRMAQ69YN4 1812 aaKnown RBP11.04□□□□□ -0.64
LPCAT3-208ENST00000538987 SIPA1L3O60292 1781 aaPredicted RBP11.03□□□□□ -0.64
LPCAT3-208ENST00000538987 BTAF1O14981 1849 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms