RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 SLC4A10Q6U841 1118 aa14.17□□□□□ -0.14
SYNE1-234ENST00000536990 ZDHHC9Q9Y397 364 aa14.17□□□□□ -0.14
SYNE1-234ENST00000536990 DIP2AQ14689 1571 aa14.16□□□□□ -0.14
SYNE1-234ENST00000536990 THEMISQ8N1K5 641 aaPredicted RBP14.16□□□□□ -0.14
SYNE1-234ENST00000536990 OSBPL3Q9H4L5 887 aa14.16□□□□□ -0.14
SYNE1-234ENST00000536990 RIMS1Q86UR5 1692 aaKnown RBP14.16□□□□□ -0.14
SYNE1-234ENST00000536990 ERC2O15083 957 aa14.16□□□□□ -0.14
SYNE1-234ENST00000536990 HMMRO75330 724 aa14.16□□□□□ -0.14
SYNE1-234ENST00000536990 ZSCAN23Q3MJ62 389 aa14.16□□□□□ -0.14
SYNE1-234ENST00000536990 G2E3Q7L622 706 aa14.16□□□□□ -0.14
SYNE1-234ENST00000536990 CCT4P50991 539 aaKnown RBP14.15□□□□□ -0.14
SYNE1-234ENST00000536990 CAVIN1Q6NZI2 390 aaKnown RBP14.15□□□□□ -0.14
SYNE1-234ENST00000536990 TUBGCP6Q96RT7 1819 aa14.15□□□□□ -0.14
SYNE1-234ENST00000536990 F6X3S4 739 aa14.15□□□□□ -0.15
SYNE1-234ENST00000536990 STK31Q9BXU1 1019 aa14.15□□□□□ -0.15
SYNE1-234ENST00000536990 HTATSF1O43719 755 aaKnown RBP14.14□□□□□ -0.15
SYNE1-234ENST00000536990 PDE1AP54750 535 aa14.14□□□□□ -0.15
SYNE1-234ENST00000536990 CEP170BQ9Y4F5 1589 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-234ENST00000536990 ZSCAN30Q86W11 494 aa14.14□□□□□ -0.15
SYNE1-234ENST00000536990 PIK3C2AO00443 1686 aa14.13□□□□□ -0.15
SYNE1-234ENST00000536990 GPT2Q8TD30 523 aa14.13□□□□□ -0.15
SYNE1-234ENST00000536990 SALL3Q9BXA9 1300 aa14.13□□□□□ -0.15
SYNE1-234ENST00000536990 GNAT3A8MTJ3 354 aa14.12□□□□□ -0.15
SYNE1-234ENST00000536990 NCLP19338 710 aaKnown RBP14.12□□□□□ -0.15
SYNE1-234ENST00000536990 NUTM2GQ5VZR2 741 aa14.12□□□□□ -0.15
SYNE1-234ENST00000536990 PRPF40AO75400 957 aaKnown RBP14.12□□□□□ -0.15
SYNE1-234ENST00000536990 ANP32BQ92688 251 aaKnown RBP14.12□□□□□ -0.15
SYNE1-234ENST00000536990 RBSNQ9H1K0 784 aa14.12□□□□□ -0.15
SYNE1-234ENST00000536990 HOXC9P31274 260 aa14.12□□□□□ -0.15
SYNE1-234ENST00000536990 GNAI2P04899 355 aa14.11□□□□□ -0.15
SYNE1-234ENST00000536990 CCDC30Q5VVM6 783 aa14.11□□□□□ -0.15
SYNE1-234ENST00000536990 ANKARQ7Z5J8 1434 aa14.11□□□□□ -0.15
SYNE1-234ENST00000536990 KCNA6P17658 529 aa14.1□□□□□ -0.15
SYNE1-234ENST00000536990 PRIM1P49642 420 aaKnown RBP14.1□□□□□ -0.15
SYNE1-234ENST00000536990 ABTB2Q8N961 1025 aa14.1□□□□□ -0.15
SYNE1-234ENST00000536990 PDLIM2Q96JY6 352 aa14.1□□□□□ -0.15
SYNE1-234ENST00000536990 RBM27Q9P2N5 1060 aaKnown RBP14.1□□□□□ -0.15
SYNE1-234ENST00000536990 RRP9O43818 475 aaKnown RBP14.1□□□□□ -0.15
SYNE1-234ENST00000536990 FLIIQ13045 1269 aa14.1□□□□□ -0.15
SYNE1-234ENST00000536990 FKBP5Q13451 457 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-234ENST00000536990 CHAMP1Q96JM3 812 aa14.1□□□□□ -0.15
SYNE1-234ENST00000536990 TMX3Q96JJ7 454 aa14.09□□□□□ -0.15
SYNE1-234ENST00000536990 ESYT1Q9BSJ8 1104 aa14.09□□□□□ -0.15
SYNE1-234ENST00000536990 XRN1Q8IZH2 1706 aaKnown RBP14.09□□□□□ -0.15
SYNE1-234ENST00000536990 HS1BP3Q53T59 392 aa14.09□□□□□ -0.15
SYNE1-234ENST00000536990 LTV1Q96GA3 475 aaPredicted RBP14.09□□□□□ -0.15
SYNE1-234ENST00000536990 EXOC6BQ9Y2D4 811 aa14.09□□□□□ -0.15
SYNE1-234ENST00000536990 FER1L4A9Z1Z3 1794 aa14.09□□□□□ -0.15
SYNE1-234ENST00000536990 GNAI3P08754 354 aa14.09□□□□□ -0.15
SYNE1-234ENST00000536990 NEK4P51957 841 aa14.09□□□□□ -0.15
SYNE1-234ENST00000536990 NECTIN2Q92692 538 aa14.09□□□□□ -0.15
SYNE1-234ENST00000536990 TPM2P07951 284 aa14.08□□□□□ -0.16
SYNE1-234ENST00000536990 CUL4AQ13619 759 aa14.08□□□□□ -0.16
SYNE1-234ENST00000536990 TSHZ3Q63HK5 1081 aa14.08□□□□□ -0.16
SYNE1-234ENST00000536990 TMEM63CQ9P1W3 806 aa14.08□□□□□ -0.16
SYNE1-234ENST00000536990 CACNA1FO60840 1977 aa14.08□□□□□ -0.16
SYNE1-234ENST00000536990 OFD1O75665 1012 aa14.08□□□□□ -0.16
SYNE1-234ENST00000536990 HSP90AA2PQ14568 343 aaPredicted RBP14.08□□□□□ -0.16
SYNE1-234ENST00000536990 TAF7Q15545 349 aaPredicted RBP14.08□□□□□ -0.16
SYNE1-234ENST00000536990 IL17REQ8NFR9 667 aa14.08□□□□□ -0.16
SYNE1-234ENST00000536990 NSFL1CQ9UNZ2 370 aaKnown RBP14.08□□□□□ -0.16
SYNE1-234ENST00000536990 MAP3K5Q99683 1374 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 C14orf37Q86TY3 774 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 SOS1Q07889 1333 aaPredicted RBP14.07□□□□□ -0.16
SYNE1-234ENST00000536990 BRD1O95696 1058 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 MCM2P49736 904 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 PALD1Q9ULE6 856 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 LRRC37A3O60309 1634 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 LRSAM1Q6UWE0 723 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 IL17RAQ96F46 866 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 LRRCC1Q9C099 1032 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 BABAM1Q9NWV8 329 aa14.07□□□□□ -0.16
SYNE1-234ENST00000536990 FAM208AQ9UK61 1670 aaKnown RBP14.06□□□□□ -0.16
SYNE1-234ENST00000536990 MX1P20591 662 aa14.06□□□□□ -0.16
SYNE1-234ENST00000536990 CHMLP26374 656 aa14.06□□□□□ -0.16
SYNE1-234ENST00000536990 KIAA1211Q6ZU35 1233 aa14.06□□□□□ -0.16
SYNE1-234ENST00000536990 PNMA6EA0A0J9YXQ4 647 aa14.06□□□□□ -0.16
SYNE1-234ENST00000536990 MSNP26038 577 aaKnown RBP14.06□□□□□ -0.16
SYNE1-234ENST00000536990 ANAPC15P60006 121 aa14.06□□□□□ -0.16
SYNE1-234ENST00000536990 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.06□□□□□ -0.16
SYNE1-234ENST00000536990 NOL7Q9UMY1 257 aaKnown RBP14.06□□□□□ -0.16
SYNE1-234ENST00000536990 NWD1Q149M9 1564 aa14.05□□□□□ -0.16
SYNE1-234ENST00000536990 MARF1Q9Y4F3 1742 aaKnown RBP14.05□□□□□ -0.16
SYNE1-234ENST00000536990 ATP8B2P98198 1209 aa14.05□□□□□ -0.16
SYNE1-234ENST00000536990 STAP2Q9UGK3 403 aa14.05□□□□□ -0.16
SYNE1-234ENST00000536990 N4BP2Q86UW6 1770 aaPredicted RBP14.05□□□□□ -0.16
SYNE1-234ENST00000536990 FOXD4L5Q5VV16 416 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-234ENST00000536990 FOXD4L4Q8WXT5 416 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-234ENST00000536990 SYCE3A1L190 88 aa14.04□□□□□ -0.16
SYNE1-234ENST00000536990 USHBP1Q8N6Y0 703 aa14.04□□□□□ -0.16
SYNE1-234ENST00000536990 INTS4Q96HW7 963 aaKnown RBP14.04□□□□□ -0.16
SYNE1-234ENST00000536990 MBD3O95983 291 aa14.04□□□□□ -0.16
SYNE1-234ENST00000536990 MCCP23508 829 aa14.04□□□□□ -0.16
SYNE1-234ENST00000536990 PHF8Q9UPP1 1060 aa14.04□□□□□ -0.16
SYNE1-234ENST00000536990 USP54Q70EL1 1684 aa14.03□□□□□ -0.16
SYNE1-234ENST00000536990 ZNF500O60304 480 aaPredicted RBP14.03□□□□□ -0.16
SYNE1-234ENST00000536990 HDGFL1Q5TGJ6 251 aa14.03□□□□□ -0.16
SYNE1-234ENST00000536990 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.03□□□□□ -0.16
SYNE1-234ENST00000536990 LRRFIP2Q9Y608 721 aaKnown RBP14.03□□□□□ -0.16
SYNE1-234ENST00000536990 UNC5CLQ8IV45 518 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms