RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	PRKD2	Q9BZL6	878 aa		9.25	□□□□□ -0.93
PRKDC-208	ENST00000536710	ARHGEF10L	Q9HCE6	1279 aa		9.25	□□□□□ -0.93
PRKDC-208	ENST00000536710	ANO2	Q9NQ90	1003 aa		9.25	□□□□□ -0.93
PRKDC-208	ENST00000536710	TTC24	A2A3L6	582 aa	Predicted RBP	9.24	□□□□□ -0.93
PRKDC-208	ENST00000536710	ZNF211	Q13398	564 aa	Predicted RBP	9.24	□□□□□ -0.93
PRKDC-208	ENST00000536710	FKBP5	Q13451	457 aa	Predicted RBP	9.24	□□□□□ -0.93
PRKDC-208	ENST00000536710	PURB	Q96QR8	312 aa	Known RBP	9.24	□□□□□ -0.93
PRKDC-208	ENST00000536710		A0A0G2JS52	829 aa		9.23	□□□□□ -0.93
PRKDC-208	ENST00000536710	WASL	O00401	505 aa	Predicted RBP	9.23	□□□□□ -0.93
PRKDC-208	ENST00000536710	PTCD1	O75127	700 aa	Known RBP	9.23	□□□□□ -0.93
PRKDC-208	ENST00000536710	IGFBP4	P22692	258 aa		9.23	□□□□□ -0.93
PRKDC-208	ENST00000536710	SNIP1	Q8TAD8	396 aa	Known RBP	9.23	□□□□□ -0.93
PRKDC-208	ENST00000536710	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	9.23	□□□□□ -0.93
PRKDC-208	ENST00000536710	PKD2L1	Q9P0L9	805 aa		9.23	□□□□□ -0.93
PRKDC-208	ENST00000536710	SEPT3	Q9UH03	358 aa		9.23	□□□□□ -0.93
PRKDC-208	ENST00000536710		H3BRB1	525 aa		9.22	□□□□□ -0.93
PRKDC-208	ENST00000536710	CBLB	Q13191	982 aa		9.22	□□□□□ -0.93
PRKDC-208	ENST00000536710	NAA30	Q147X3	362 aa	Predicted RBP	9.22	□□□□□ -0.93
PRKDC-208	ENST00000536710	TBCEL	Q5QJ74	424 aa		9.22	□□□□□ -0.93
PRKDC-208	ENST00000536710	GTF3C2	Q8WUA4	911 aa	Predicted RBP	9.22	□□□□□ -0.93
PRKDC-208	ENST00000536710	TUT1	Q9H6E5	874 aa	Known RBP	9.22	□□□□□ -0.93
PRKDC-208	ENST00000536710	ATAD2	Q6PL18	1390 aa		9.22	□□□□□ -0.93
PRKDC-208	ENST00000536710	PPP1R12B	O60237	982 aa	Predicted RBP	9.21	□□□□□ -0.94
PRKDC-208	ENST00000536710	ADH1A	P07327	375 aa		9.21	□□□□□ -0.94
PRKDC-208	ENST00000536710	CAPN12	Q6ZSI9	719 aa		9.21	□□□□□ -0.94
PRKDC-208	ENST00000536710	GLYCTK	Q8IVS8	523 aa		9.21	□□□□□ -0.94
PRKDC-208	ENST00000536710	CYP4X1	Q8N118	509 aa		9.21	□□□□□ -0.94
PRKDC-208	ENST00000536710		A6NJY4	79 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710		J3QL48	77 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	TNFRSF10A	O00220	468 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	FOXO3	O43524	673 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	ZIC2	O95409	532 aa	Predicted RBP	9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	SMTN	P53814	917 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	WDR4	P57081	412 aa	Known RBP	9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	TLR1	Q15399	786 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	CNKSR1	Q969H4	720 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	ITPKC	Q96DU7	683 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	SLC4A9	Q96Q91	983 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	EGFL7	Q9UHF1	273 aa		9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710		V9GY48	417 aa	Predicted RBP	9.2	□□□□□ -0.94
PRKDC-208	ENST00000536710	IL2RA	P01589	272 aa		9.19	□□□□□ -0.94
PRKDC-208	ENST00000536710	EPHA4	P54764	986 aa		9.19	□□□□□ -0.94
PRKDC-208	ENST00000536710	SLC9A9	Q8IVB4	645 aa		9.19	□□□□□ -0.94
PRKDC-208	ENST00000536710	ZFAND3	Q9H8U3	227 aa		9.19	□□□□□ -0.94
PRKDC-208	ENST00000536710	SCHIP1	Q9P0W5	487 aa	Predicted RBP	9.19	□□□□□ -0.94
PRKDC-208	ENST00000536710		A0A1W2PRU2	124 aa		9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	MEN1	O00255	615 aa		9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	C21orf2	O43822	256 aa		9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	RBM25	P49756	843 aa	Known RBP	9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	RELB	Q01201	579 aa		9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	MTMR3	Q13615	1198 aa		9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	XAGE2	Q96GT9	111 aa		9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	AGBL1	Q96MI9	1066 aa		9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	CHMP3	Q9Y3E7	222 aa		9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	9.18	□□□□□ -0.94
PRKDC-208	ENST00000536710	ICMT	O60725	284 aa		9.17	□□□□□ -0.94
PRKDC-208	ENST00000536710	MARS	P56192	900 aa	Known RBP	9.17	□□□□□ -0.94
PRKDC-208	ENST00000536710	NLRP3	Q96P20	1036 aa		9.17	□□□□□ -0.94
PRKDC-208	ENST00000536710	ESYT1	Q9BSJ8	1104 aa		9.17	□□□□□ -0.94
PRKDC-208	ENST00000536710	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	9.17	□□□□□ -0.94
PRKDC-208	ENST00000536710	PTGIR	P43119	386 aa		9.16	□□□□□ -0.94
PRKDC-208	ENST00000536710	FKBP4	Q02790	459 aa	Known RBP eCLIP	9.16	□□□□□ -0.94
PRKDC-208	ENST00000536710	CLN3	Q13286	438 aa		9.16	□□□□□ -0.94
PRKDC-208	ENST00000536710	COL26A1	Q96A83	441 aa		9.16	□□□□□ -0.94
PRKDC-208	ENST00000536710	GDF9	O60383	454 aa		9.15	□□□□□ -0.94
PRKDC-208	ENST00000536710	PSMA6	P60900	246 aa	Known RBP	9.15	□□□□□ -0.94
PRKDC-208	ENST00000536710	FOXK2	Q01167	660 aa		9.15	□□□□□ -0.94
PRKDC-208	ENST00000536710	SF3B2	Q13435	895 aa	Known RBP	9.15	□□□□□ -0.94
PRKDC-208	ENST00000536710	MTFR1	Q15390	333 aa		9.15	□□□□□ -0.94
PRKDC-208	ENST00000536710		Q6ZVU0	165 aa		9.15	□□□□□ -0.94
PRKDC-208	ENST00000536710	ZNF428	Q96B54	188 aa		9.15	□□□□□ -0.94
PRKDC-208	ENST00000536710	ZNF395	Q9H8N7	513 aa	Predicted RBP	9.15	□□□□□ -0.94
PRKDC-208	ENST00000536710	CDK2AP1	O14519	115 aa		9.14	□□□□□ -0.95
PRKDC-208	ENST00000536710	TIMP2	P16035	220 aa		9.14	□□□□□ -0.95
PRKDC-208	ENST00000536710	NBPF15	Q8N660	670 aa		9.14	□□□□□ -0.95
PRKDC-208	ENST00000536710	KDF1	Q8NAX2	398 aa	Predicted RBP	9.14	□□□□□ -0.95
PRKDC-208	ENST00000536710	HELQ	Q8TDG4	1101 aa		9.14	□□□□□ -0.95
PRKDC-208	ENST00000536710	ZNF232	Q9UNY5	417 aa		9.14	□□□□□ -0.95
PRKDC-208	ENST00000536710	GTF2E1	P29083	439 aa	Predicted RBP	9.13	□□□□□ -0.95
PRKDC-208	ENST00000536710	CENPC	Q03188	943 aa		9.13	□□□□□ -0.95
PRKDC-208	ENST00000536710	C16orf46	Q6P387	395 aa		9.13	□□□□□ -0.95
PRKDC-208	ENST00000536710	NGLY1	Q96IV0	654 aa		9.13	□□□□□ -0.95
PRKDC-208	ENST00000536710	C2orf49	Q9BVC5	232 aa	Predicted RBP	9.13	□□□□□ -0.95
PRKDC-208	ENST00000536710	KLF16	Q9BXK1	252 aa	Predicted RBP	9.13	□□□□□ -0.95
PRKDC-208	ENST00000536710	CABP1	Q9NZU7	370 aa		9.13	□□□□□ -0.95
PRKDC-208	ENST00000536710	USP3	Q9Y6I4	520 aa		9.13	□□□□□ -0.95
PRKDC-208	ENST00000536710	SMPD1	P17405	629 aa		9.12	□□□□□ -0.95
PRKDC-208	ENST00000536710	MAPK1	P28482	360 aa		9.12	□□□□□ -0.95
PRKDC-208	ENST00000536710	TOR4A	Q9NXH8	423 aa		9.12	□□□□□ -0.95
PRKDC-208	ENST00000536710	SERTM1	A2A2V5	107 aa		9.11	□□□□□ -0.95
PRKDC-208	ENST00000536710	TMEM214	Q6NUQ4	689 aa	Known RBP	9.11	□□□□□ -0.95
PRKDC-208	ENST00000536710	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	9.11	□□□□□ -0.95
PRKDC-208	ENST00000536710	SAP130	Q9H0E3	1048 aa		9.11	□□□□□ -0.95
PRKDC-208	ENST00000536710	AMOTL2	Q9Y2J4	779 aa		9.11	□□□□□ -0.95
PRKDC-208	ENST00000536710	FAM13A	O94988	1023 aa		9.1	□□□□□ -0.95
PRKDC-208	ENST00000536710	ERCC3	P19447	782 aa		9.1	□□□□□ -0.95
PRKDC-208	ENST00000536710	AAMP	Q13685	434 aa		9.1	□□□□□ -0.95
PRKDC-208	ENST00000536710	SLC27A3	Q5K4L6	730 aa		9.1	□□□□□ -0.95
PRKDC-208	ENST00000536710	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	9.1	□□□□□ -0.95
PRKDC-208	ENST00000536710	STAG2	Q8N3U4	1231 aa		9.1	□□□□□ -0.95

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