RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.61□□□□□ -1.67
MCF2-210ENST00000536274 MST1RQ04912 1400 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 DDX11L8A8MPP1 907 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 PTMAP06454 111 aaKnown RBP4.6□□□□□ -1.67
MCF2-210ENST00000536274 SLFN14P0C7P3 912 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 FAM43BQ6ZT52 329 aaPredicted RBP4.6□□□□□ -1.67
MCF2-210ENST00000536274 CCDC125Q86Z20 511 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 GPATCH11Q8N954 259 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 RNF25Q96BH1 459 aaPredicted RBP4.6□□□□□ -1.67
MCF2-210ENST00000536274 FAM163AQ96GL9 167 aaPredicted RBP4.6□□□□□ -1.67
MCF2-210ENST00000536274 DNAJC2Q99543 621 aaKnown RBP4.6□□□□□ -1.67
MCF2-210ENST00000536274 COLQQ9Y215 455 aaPredicted RBP4.6□□□□□ -1.67
MCF2-210ENST00000536274 COG6Q9Y2V7 657 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 DOK7Q18PE1 504 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 CC2D1BQ5T0F9 858 aaKnown RBP4.6□□□□□ -1.67
MCF2-210ENST00000536274 CABP2Q9NPB3 220 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 STK26Q9P289 416 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 BOLA1Q9Y3E2 137 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 FMN2Q9NZ56 1722 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 HFM1A2PYH4 1435 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 ATRNO75882 1429 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 FAM193AP78312 1265 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 MCTP1Q6DN14 999 aa4.6□□□□□ -1.67
MCF2-210ENST00000536274 NSFL1CQ9UNZ2 370 aaKnown RBP4.6□□□□□ -1.67
MCF2-210ENST00000536274 GTPBP6O43824 516 aaPredicted RBP4.59□□□□□ -1.67
MCF2-210ENST00000536274 CADPS2Q86UW7 1296 aa4.59□□□□□ -1.67
MCF2-210ENST00000536274 SIRT1Q96EB6 747 aa4.59□□□□□ -1.67
MCF2-210ENST00000536274 C22orf23Q9BZE7 217 aa4.59□□□□□ -1.67
MCF2-210ENST00000536274 UPF2Q9HAU5 1272 aaKnown RBP4.59□□□□□ -1.67
MCF2-210ENST00000536274 MYOM2P54296 1465 aa4.59□□□□□ -1.67
MCF2-210ENST00000536274 PKP1Q13835 747 aa4.59□□□□□ -1.67
MCF2-210ENST00000536274 NBPF1Q3BBV0 1214 aa4.59□□□□□ -1.67
MCF2-210ENST00000536274 ZSCAN23Q3MJ62 389 aa4.59□□□□□ -1.67
MCF2-210ENST00000536274 TIGD1Q96MW7 591 aa4.59□□□□□ -1.67
MCF2-210ENST00000536274 POTEB2H3BUK9 544 aa4.59□□□□□ -1.68
MCF2-210ENST00000536274 FOXD4L6Q3SYB3 417 aaPredicted RBP4.59□□□□□ -1.68
MCF2-210ENST00000536274 DNAJC21Q5F1R6 531 aaKnown RBP4.59□□□□□ -1.68
MCF2-210ENST00000536274 FBXO31Q5XUX0 539 aaPredicted RBP4.59□□□□□ -1.68
MCF2-210ENST00000536274 FOXD4L3Q6VB84 417 aaPredicted RBP4.59□□□□□ -1.68
MCF2-210ENST00000536274 ZSWIM6Q9HCJ5 1215 aa4.59□□□□□ -1.68
MCF2-210ENST00000536274 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.59□□□□□ -1.68
MCF2-210ENST00000536274 KIF3AQ9Y496 699 aa4.59□□□□□ -1.68
MCF2-210ENST00000536274 V9GYY5 206 aaPredicted RBP4.59□□□□□ -1.68
MCF2-210ENST00000536274 ATAD2Q6PL18 1390 aa4.59□□□□□ -1.68
MCF2-210ENST00000536274 DISP2A7MBM2 1401 aa4.59□□□□□ -1.68
MCF2-210ENST00000536274 ANKRD50Q9ULJ7 1429 aa4.59□□□□□ -1.68
MCF2-210ENST00000536274 NRAPQ86VF7 1730 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 CRYBG1Q9Y4K1 1723 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 DLC1Q96QB1 1528 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 SYCE3A1L190 88 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 POTEFA5A3E0 1075 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 TRIM66O15016 1216 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 TNNT3P45378 269 aaPredicted RBP4.58□□□□□ -1.68
MCF2-210ENST00000536274 SRPK2P78362 688 aaKnown RBP4.58□□□□□ -1.68
MCF2-210ENST00000536274 CT47A1Q5JQC4 288 aaPredicted RBP4.58□□□□□ -1.68
MCF2-210ENST00000536274 LMOD2Q6P5Q4 547 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 RSPH14Q9UHP6 348 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 FEZ2Q9UHY8 353 aaPredicted RBP4.58□□□□□ -1.68
MCF2-210ENST00000536274 HSP90AB1P08238 724 aaKnown RBP4.58□□□□□ -1.68
MCF2-210ENST00000536274 LTKP29376 864 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 SART3Q15020 963 aaKnown RBP4.58□□□□□ -1.68
MCF2-210ENST00000536274 POTEGQ6S5H5 508 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 TXNDC2Q86VQ3 553 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 HSCBQ8IWL3 235 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 CLTCL1P53675 1640 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 LRPPRCP42704 1394 aaKnown RBP4.58□□□□□ -1.68
MCF2-210ENST00000536274 NPHP1O15259 732 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 CSPP1Q1MSJ5 1256 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 CCDC146Q8IYE0 955 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 CLUAP1Q96AJ1 413 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 ZNF777Q9ULD5 760 aaPredicted RBP4.58□□□□□ -1.68
MCF2-210ENST00000536274 PDZRN3Q9UPQ7 1066 aa4.58□□□□□ -1.68
MCF2-210ENST00000536274 ZNF644Q9H582 1327 aaPredicted RBP4.57□□□□□ -1.68
MCF2-210ENST00000536274 RREB1Q92766 1687 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 POTEMA6NI47 508 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 HNRNPH2P55795 449 aaKnown RBP4.57□□□□□ -1.68
MCF2-210ENST00000536274 KIAA2012Q0VF49 1180 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 RGL3Q3MIN7 710 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 BCL2L13Q9BXK5 485 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 RGS12O14924 1447 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 PNPLA6Q8IY17 1366 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 RPGRIP1LQ68CZ1 1315 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 NOLC1Q14978 699 aaKnown RBP eCLIP4.57□□□□□ -1.68
MCF2-210ENST00000536274 TAF3Q5VWG9 929 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 PDLIM2Q96JY6 352 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 LCMT1Q9UIC8 334 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 PLCH1Q4KWH8 1693 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 USP32Q8NFA0 1604 aa4.57□□□□□ -1.68
MCF2-210ENST00000536274 PRPF40AO75400 957 aaKnown RBP4.56□□□□□ -1.68
MCF2-210ENST00000536274 C10orf67Q8IYJ2 551 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 BANK1Q8NDB2 785 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 GAS2L2Q8NHY3 880 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 C19orf44Q9H6X5 657 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 PCDHB15Q9Y5E8 787 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 PXDNQ92626 1479 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 TULP2O00295 520 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 IRF6O14896 467 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 BAG4O95429 457 aaKnown RBP4.56□□□□□ -1.68
MCF2-210ENST00000536274 MMP14P50281 582 aa4.56□□□□□ -1.68
MCF2-210ENST00000536274 TERF2Q15554 542 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms