RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ANP32CO43423 234 aa26.38■■□□□ 1.81
CPSF1-209ENST00000532725 PAPPAQ13219 1627 aa26.37■■□□□ 1.81
CPSF1-209ENST00000532725 ADAMTS7Q9UKP4 1686 aa26.37■■□□□ 1.81
CPSF1-209ENST00000532725 NEFMP07197 916 aa26.36■■□□□ 1.81
CPSF1-209ENST00000532725 HMGB2P26583 209 aaKnown RBP26.36■■□□□ 1.81
CPSF1-209ENST00000532725 SLC4A9Q96Q91 983 aa26.36■■□□□ 1.81
CPSF1-209ENST00000532725 PDGFDQ9GZP0 370 aaPredicted RBP26.36■■□□□ 1.81
CPSF1-209ENST00000532725 ADAMTS8Q9UP79 889 aa26.36■■□□□ 1.81
CPSF1-209ENST00000532725 HTATSF1O43719 755 aaKnown RBP26.35■■□□□ 1.81
CPSF1-209ENST00000532725 CCDC184Q52MB2 194 aa26.35■■□□□ 1.81
CPSF1-209ENST00000532725 CEMIPQ8WUJ3 1361 aa26.34■■□□□ 1.81
CPSF1-209ENST00000532725 SRCAPQ6ZRS2 3230 aa26.34■■□□□ 1.81
CPSF1-209ENST00000532725 ATP6V1AP38606 617 aa26.34■■□□□ 1.81
CPSF1-209ENST00000532725 ITPK1Q13572 414 aa26.33■■□□□ 1.81
CPSF1-209ENST00000532725 WDR43Q15061 677 aaKnown RBP eCLIP26.33■■□□□ 1.81
CPSF1-209ENST00000532725 RBM42Q9BTD8 480 aaKnown RBP26.33■■□□□ 1.81
CPSF1-209ENST00000532725 MRC1P22897 1456 aa26.33■■□□□ 1.81
CPSF1-209ENST00000532725 SLC39A6Q13433 755 aa26.32■■□□□ 1.8
CPSF1-209ENST00000532725 NFE2L2Q16236 605 aa26.32■■□□□ 1.8
CPSF1-209ENST00000532725 RTF1Q92541 710 aaKnown RBP26.32■■□□□ 1.8
CPSF1-209ENST00000532725 PTCD1O75127 700 aaKnown RBP26.31■■□□□ 1.8
CPSF1-209ENST00000532725 TEFQ10587 303 aa26.31■■□□□ 1.8
CPSF1-209ENST00000532725 MCM10Q7L590 875 aa26.31■■□□□ 1.8
CPSF1-209ENST00000532725 LINC00116Q8NCU8 138 aa26.31■■□□□ 1.8
CPSF1-209ENST00000532725 TFCP2L1Q9NZI6 479 aa26.31■■□□□ 1.8
CPSF1-209ENST00000532725 DCTN1Q14203 1278 aa26.3■■□□□ 1.8
CPSF1-209ENST00000532725 MAPK8IP3Q9UPT6 1336 aa26.3■■□□□ 1.8
CPSF1-209ENST00000532725 VIRMAQ69YN4 1812 aaKnown RBP26.28■■□□□ 1.8
CPSF1-209ENST00000532725 CCDC146Q8IYE0 955 aa26.27■■□□□ 1.8
CPSF1-209ENST00000532725 RUNDC1Q96C34 613 aa26.27■■□□□ 1.8
CPSF1-209ENST00000532725 PNPLA7Q6ZV29 1317 aa26.27■■□□□ 1.8
CPSF1-209ENST00000532725 TAF1LQ8IZX4 1826 aa26.25■■□□□ 1.79
CPSF1-209ENST00000532725 TMPOP42166 694 aaKnown RBP26.25■■□□□ 1.79
CPSF1-209ENST00000532725 C5P01031 1676 aa26.25■■□□□ 1.79
CPSF1-209ENST00000532725 RIPK4P57078 832 aa26.24■■□□□ 1.79
CPSF1-209ENST00000532725 ZNF790Q6PG37 636 aa26.24■■□□□ 1.79
CPSF1-209ENST00000532725 BTBD11A6QL63 1104 aa26.23■■□□□ 1.79
CPSF1-209ENST00000532725 RC3H1Q5TC82 1133 aaKnown RBP26.23■■□□□ 1.79
CPSF1-209ENST00000532725 AMIGO3Q86WK7 504 aa26.23■■□□□ 1.79
CPSF1-209ENST00000532725 COL23A1Q86Y22 540 aaPredicted RBP26.23■■□□□ 1.79
CPSF1-209ENST00000532725 PNISRQ8TF01 805 aaKnown RBP26.23■■□□□ 1.79
CPSF1-209ENST00000532725 CASZ1Q86V15 1759 aa26.23■■□□□ 1.79
CPSF1-209ENST00000532725 ZNF831Q5JPB2 1677 aa26.22■■□□□ 1.79
CPSF1-209ENST00000532725 ZBTB7AO95365 584 aa26.22■■□□□ 1.79
CPSF1-209ENST00000532725 AK7Q96M32 723 aa26.22■■□□□ 1.79
CPSF1-209ENST00000532725 SPON1Q9HCB6 807 aa26.22■■□□□ 1.79
CPSF1-209ENST00000532725 KCNQ3O43525 872 aa26.21■■□□□ 1.79
CPSF1-209ENST00000532725 TAF7Q15545 349 aaPredicted RBP26.21■■□□□ 1.79
CPSF1-209ENST00000532725 TTC5Q8N0Z6 440 aa26.21■■□□□ 1.79
CPSF1-209ENST00000532725 VSIG10Q8N0Z9 540 aa26.21■■□□□ 1.79
CPSF1-209ENST00000532725 MRS2Q9HD23 443 aa26.21■■□□□ 1.79
CPSF1-209ENST00000532725 C4BP0C0L5 1744 aa26.21■■□□□ 1.79
CPSF1-209ENST00000532725 FLAD1Q8NFF5 587 aa26.2■■□□□ 1.78
CPSF1-209ENST00000532725 SLC16A10Q8TF71 515 aa26.2■■□□□ 1.78
CPSF1-209ENST00000532725 ZNF496Q96IT1 587 aaPredicted RBP26.2■■□□□ 1.78
CPSF1-209ENST00000532725 SIPA1L3O60292 1781 aaPredicted RBP26.2■■□□□ 1.78
CPSF1-209ENST00000532725 KCPQ6ZWJ8 1503 aa26.19■■□□□ 1.78
CPSF1-209ENST00000532725 SMIM5Q71RC9 77 aa26.19■■□□□ 1.78
CPSF1-209ENST00000532725 DNAJC10Q8IXB1 793 aa26.19■■□□□ 1.78
CPSF1-209ENST00000532725 THUMPD2Q9BTF0 503 aaKnown RBP26.19■■□□□ 1.78
CPSF1-209ENST00000532725 MTFR1LQ9H019 292 aa26.19■■□□□ 1.78
CPSF1-209ENST00000532725 ATF5Q9Y2D1 282 aaPredicted RBP26.19■■□□□ 1.78
CPSF1-209ENST00000532725 RRP7AQ9Y3A4 280 aaKnown RBP26.19■■□□□ 1.78
CPSF1-209ENST00000532725 DLG5Q8TDM6 1919 aa26.19■■□□□ 1.78
CPSF1-209ENST00000532725 CNTNAP4Q9C0A0 1308 aa26.18■■□□□ 1.78
CPSF1-209ENST00000532725 QSER1Q2KHR3 1735 aa26.17■■□□□ 1.78
CPSF1-209ENST00000532725 GNPATO15228 680 aa26.17■■□□□ 1.78
CPSF1-209ENST00000532725 NEUROD2Q15784 382 aa26.17■■□□□ 1.78
CPSF1-209ENST00000532725 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.16■■□□□ 1.78
CPSF1-209ENST00000532725 SSFA2P28290 1259 aa26.16■■□□□ 1.78
CPSF1-209ENST00000532725 PTGER2P43116 358 aa26.16■■□□□ 1.78
CPSF1-209ENST00000532725 CRKLP46109 303 aaKnown RBP26.16■■□□□ 1.78
CPSF1-209ENST00000532725 MIS18AQ9NYP9 233 aa26.16■■□□□ 1.78
CPSF1-209ENST00000532725 TUBGCP6Q96RT7 1819 aa26.16■■□□□ 1.78
CPSF1-209ENST00000532725 RPS6KA4O75676 772 aa26.15■■□□□ 1.78
CPSF1-209ENST00000532725 CYP19A1P11511 503 aaPredicted RBP26.15■■□□□ 1.78
CPSF1-209ENST00000532725 INTS5Q6P9B9 1019 aaKnown RBP26.15■■□□□ 1.78
CPSF1-209ENST00000532725 FMNL2Q96PY5 1086 aa26.15■■□□□ 1.78
CPSF1-209ENST00000532725 TRIM35Q9UPQ4 493 aa26.15■■□□□ 1.78
CPSF1-209ENST00000532725 LRP5O75197 1615 aa26.14■■□□□ 1.78
CPSF1-209ENST00000532725 APAF1O14727 1248 aa26.14■■□□□ 1.78
CPSF1-209ENST00000532725 MSH5O43196 834 aa26.14■■□□□ 1.78
CPSF1-209ENST00000532725 LMOD3Q0VAK6 560 aa26.14■■□□□ 1.78
CPSF1-209ENST00000532725 SGIP1Q9BQI5 828 aa26.14■■□□□ 1.78
CPSF1-209ENST00000532725 RTCBQ9Y3I0 505 aaKnown RBP26.14■■□□□ 1.78
CPSF1-209ENST00000532725 HEG1Q9ULI3 1381 aa26.13■■□□□ 1.77
CPSF1-209ENST00000532725 PHF14O94880 888 aa26.13■■□□□ 1.77
CPSF1-209ENST00000532725 UBR2Q8IWV8 1755 aa26.12■■□□□ 1.77
CPSF1-209ENST00000532725 TRAPPC3LQ5T215 181 aa26.12■■□□□ 1.77
CPSF1-209ENST00000532725 TEX13AQ9BXU3 409 aaPredicted RBP26.12■■□□□ 1.77
CPSF1-209ENST00000532725 MYH14Q7Z406 1995 aaKnown RBP26.12■■□□□ 1.77
CPSF1-209ENST00000532725 UBR3Q6ZT12 1888 aa26.12■■□□□ 1.77
CPSF1-209ENST00000532725 COL5A3P25940 1745 aaPredicted RBP26.11■■□□□ 1.77
CPSF1-209ENST00000532725 TJP1Q07157 1748 aa26.11■■□□□ 1.77
CPSF1-209ENST00000532725 CICQ96RK0 1608 aaPredicted RBP26.11■■□□□ 1.77
CPSF1-209ENST00000532725 ARHGEF1Q92888 912 aaKnown RBP26.1■■□□□ 1.77
CPSF1-209ENST00000532725 CCDC87Q9NVE4 849 aa26.1■■□□□ 1.77
CPSF1-209ENST00000532725 STARD3NLO95772 234 aa26.09■■□□□ 1.77
CPSF1-209ENST00000532725 ADRA2BP18089 450 aa26.09■■□□□ 1.77
CPSF1-209ENST00000532725 SNRPA1P09661 255 aaKnown RBP26.07■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms