RNA–Protein interactions for RNA: ENST00000530700.1

USH1C-209, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 403 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-209ENST00000530700 THUMPD2Q9BTF0 503 aaKnown RBP17.71■□□□□ 0.43
USH1C-209ENST00000530700 BCL11BQ9C0K0 894 aaPredicted RBP17.71■□□□□ 0.43
USH1C-209ENST00000530700 PKD1L3Q7Z443 1732 aa17.7■□□□□ 0.42
USH1C-209ENST00000530700 FAM182BQ5T319 152 aa17.7■□□□□ 0.42
USH1C-209ENST00000530700 TTC5Q8N0Z6 440 aa17.7■□□□□ 0.42
USH1C-209ENST00000530700 PIGBQ92521 554 aa17.7■□□□□ 0.42
USH1C-209ENST00000530700 SMARCC1Q92922 1105 aaPredicted RBP17.7■□□□□ 0.42
USH1C-209ENST00000530700 TSPYL4Q9UJ04 414 aa17.7■□□□□ 0.42
USH1C-209ENST00000530700 ZNF853P0CG23 659 aa17.69■□□□□ 0.42
USH1C-209ENST00000530700 CHMP4AQ9BY43 222 aa17.69■□□□□ 0.42
USH1C-209ENST00000530700 KDM6AO15550 1401 aaPredicted RBP17.69■□□□□ 0.42
USH1C-209ENST00000530700 SLFN5Q08AF3 891 aa17.68■□□□□ 0.42
USH1C-209ENST00000530700 ZNF790Q6PG37 636 aa17.67■□□□□ 0.42
USH1C-209ENST00000530700 CCDC125Q86Z20 511 aa17.67■□□□□ 0.42
USH1C-209ENST00000530700 LRRC37A3O60309 1634 aa17.67■□□□□ 0.42
USH1C-209ENST00000530700 KCNQ2O43526 872 aa17.66■□□□□ 0.42
USH1C-209ENST00000530700 TRIM37O94972 964 aa17.65■□□□□ 0.42
USH1C-209ENST00000530700 SF3B2Q13435 895 aaKnown RBP17.65■□□□□ 0.42
USH1C-209ENST00000530700 TRMT2AQ8IZ69 625 aaKnown RBP17.65■□□□□ 0.42
USH1C-209ENST00000530700 MBIPQ9NS73 344 aa17.65■□□□□ 0.42
USH1C-209ENST00000530700 MIS18AQ9NYP9 233 aa17.65■□□□□ 0.42
USH1C-209ENST00000530700 FMNL2Q96PY5 1086 aa17.64■□□□□ 0.41
USH1C-209ENST00000530700 ATG3Q9NT62 314 aa17.64■□□□□ 0.41
USH1C-209ENST00000530700 WNK3Q9BYP7 1800 aa17.63■□□□□ 0.41
USH1C-209ENST00000530700 CDCA7LQ96GN5 454 aa17.63■□□□□ 0.41
USH1C-209ENST00000530700 TEX13AQ9BXU3 409 aaPredicted RBP17.63■□□□□ 0.41
USH1C-209ENST00000530700 SOS1Q07889 1333 aaPredicted RBP17.63■□□□□ 0.41
USH1C-209ENST00000530700 EIF4A1P60842 406 aaKnown RBP17.62■□□□□ 0.41
USH1C-209ENST00000530700 SLC39A6Q13433 755 aa17.62■□□□□ 0.41
USH1C-209ENST00000530700 VSIG10Q8N0Z9 540 aa17.62■□□□□ 0.41
USH1C-209ENST00000530700 SPINK5Q9NQ38 1064 aaPredicted RBP17.62■□□□□ 0.41
USH1C-209ENST00000530700 ASAP1Q9ULH1 1129 aa17.62■□□□□ 0.41
USH1C-209ENST00000530700 PLSCR1O15162 318 aa17.61■□□□□ 0.41
USH1C-209ENST00000530700 CT47B1P0C2W7 299 aaPredicted RBP17.61■□□□□ 0.41
USH1C-209ENST00000530700 DUSP27Q5VZP5 1158 aa17.61■□□□□ 0.41
USH1C-209ENST00000530700 APBA3O96018 575 aa17.6■□□□□ 0.41
USH1C-209ENST00000530700 HOXB7P09629 217 aa17.6■□□□□ 0.41
USH1C-209ENST00000530700 SNRPA1P09661 255 aaKnown RBP17.6■□□□□ 0.41
USH1C-209ENST00000530700 TSR2Q969E8 191 aaKnown RBP17.6■□□□□ 0.41
USH1C-209ENST00000530700 RBM42Q9BTD8 480 aaKnown RBP17.6■□□□□ 0.41
USH1C-209ENST00000530700 FANCIQ9NVI1 1328 aa17.6■□□□□ 0.41
USH1C-209ENST00000530700 MRC1P22897 1456 aa17.6■□□□□ 0.41
USH1C-209ENST00000530700 PTCD1O75127 700 aaKnown RBP17.59■□□□□ 0.41
USH1C-209ENST00000530700 KCNQ3O43525 872 aa17.58■□□□□ 0.4
USH1C-209ENST00000530700 ZNF428Q96B54 188 aa17.58■□□□□ 0.4
USH1C-209ENST00000530700 ZNF496Q96IT1 587 aaPredicted RBP17.58■□□□□ 0.4
USH1C-209ENST00000530700 ADAMTS7Q9UKP4 1686 aa17.58■□□□□ 0.4
USH1C-209ENST00000530700 LOC102724428A0A0B4J2F2 783 aa17.57■□□□□ 0.4
USH1C-209ENST00000530700 GIGYF1O75420 1035 aaPredicted RBP17.57■□□□□ 0.4
USH1C-209ENST00000530700 SIK1P57059 783 aa17.57■□□□□ 0.4
USH1C-209ENST00000530700 EXOSC9Q06265 439 aaKnown RBP17.57■□□□□ 0.4
USH1C-209ENST00000530700 SLC27A3Q5K4L6 730 aa17.57■□□□□ 0.4
USH1C-209ENST00000530700 SHANK3Q9BYB0 1731 aa17.57■□□□□ 0.4
USH1C-209ENST00000530700 PALLDQ8WX93 1383 aa17.56■□□□□ 0.4
USH1C-209ENST00000530700 STARD3NLO95772 234 aa17.56■□□□□ 0.4
USH1C-209ENST00000530700 ATP6V1AP38606 617 aa17.56■□□□□ 0.4
USH1C-209ENST00000530700 TWISTNBQ3B726 338 aaPredicted RBP17.56■□□□□ 0.4
USH1C-209ENST00000530700 PTF1AQ7RTS3 328 aa17.56■□□□□ 0.4
USH1C-209ENST00000530700 BAG6P46379 1132 aa17.55■□□□□ 0.4
USH1C-209ENST00000530700 HEG1Q9ULI3 1381 aa17.54■□□□□ 0.4
USH1C-209ENST00000530700 SCN11AQ9UI33 1791 aa17.54■□□□□ 0.4
USH1C-209ENST00000530700 C8orf58Q8NAV2 365 aa17.54■□□□□ 0.4
USH1C-209ENST00000530700 DLG5Q8TDM6 1919 aa17.54■□□□□ 0.4
USH1C-209ENST00000530700 ELL2O00472 640 aaPredicted RBP17.53■□□□□ 0.4
USH1C-209ENST00000530700 VAMP4O75379 141 aa17.53■□□□□ 0.4
USH1C-209ENST00000530700 CCDC30Q5VVM6 783 aa17.53■□□□□ 0.4
USH1C-209ENST00000530700 CCNL1Q9UK58 526 aaPredicted RBP17.53■□□□□ 0.4
USH1C-209ENST00000530700 BRWD3Q6RI45 1802 aa17.51■□□□□ 0.39
USH1C-209ENST00000530700 CENPBP07199 599 aaPredicted RBP17.51■□□□□ 0.39
USH1C-209ENST00000530700 EIF2S2P20042 333 aaKnown RBP17.5■□□□□ 0.39
USH1C-209ENST00000530700 TXNRD1Q16881 649 aa17.5■□□□□ 0.39
USH1C-209ENST00000530700 ALDH1L2Q3SY69 923 aa17.5■□□□□ 0.39
USH1C-209ENST00000530700 HDGFL1Q5TGJ6 251 aa17.5■□□□□ 0.39
USH1C-209ENST00000530700 NPM2Q86SE8 214 aaKnown RBP17.5■□□□□ 0.39
USH1C-209ENST00000530700 TSPYL6Q8N831 410 aa17.5■□□□□ 0.39
USH1C-209ENST00000530700 STK31Q9BXU1 1019 aa17.5■□□□□ 0.39
USH1C-209ENST00000530700 USP16Q9Y5T5 823 aa17.5■□□□□ 0.39
USH1C-209ENST00000530700 KAT6BQ8WYB5 2073 aa17.5■□□□□ 0.39
USH1C-209ENST00000530700 ERBB4Q15303 1308 aa17.49■□□□□ 0.39
USH1C-209ENST00000530700 KRT24Q2M2I5 525 aa17.49■□□□□ 0.39
USH1C-209ENST00000530700 DNAJC10Q8IXB1 793 aa17.49■□□□□ 0.39
USH1C-209ENST00000530700 DBF4Q9UBU7 674 aaPredicted RBP17.49■□□□□ 0.39
USH1C-209ENST00000530700 RC3H1Q5TC82 1133 aaKnown RBP17.48■□□□□ 0.39
USH1C-209ENST00000530700 UPF1Q92900 1129 aaKnown RBP eCLIP17.48■□□□□ 0.39
USH1C-209ENST00000530700 SLC4A9Q96Q91 983 aa17.48■□□□□ 0.39
USH1C-209ENST00000530700 CAMKK2Q96RR4 588 aa17.48■□□□□ 0.39
USH1C-209ENST00000530700 CYP19A1P11511 503 aaPredicted RBP17.47■□□□□ 0.39
USH1C-209ENST00000530700 EN1Q05925 392 aaPredicted RBP17.47■□□□□ 0.39
USH1C-209ENST00000530700 NHSQ6T4R5 1651 aa17.47■□□□□ 0.39
USH1C-209ENST00000530700 DOT1LQ8TEK3 1739 aa17.47■□□□□ 0.39
USH1C-209ENST00000530700 TOGARAM1Q9Y4F4 1720 aa17.47■□□□□ 0.39
USH1C-209ENST00000530700 PROM2Q8N271 834 aa17.46■□□□□ 0.39
USH1C-209ENST00000530700 DDX21Q9NR30 783 aaKnown RBP eCLIP17.46■□□□□ 0.39
USH1C-209ENST00000530700 HYPKQ9NX55 129 aa17.46■□□□□ 0.39
USH1C-209ENST00000530700 PRAMEF22A3QJZ6 481 aa17.45■□□□□ 0.38
USH1C-209ENST00000530700 ITPK1Q13572 414 aa17.45■□□□□ 0.38
USH1C-209ENST00000530700 RCAN3Q9UKA8 241 aa17.45■□□□□ 0.38
USH1C-209ENST00000530700 KCPQ6ZWJ8 1503 aa17.44■□□□□ 0.38
USH1C-209ENST00000530700 SLC4A2P04920 1241 aa17.44■□□□□ 0.38
USH1C-209ENST00000530700 RARSP54136 660 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms