RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, human

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP47-208	ENST00000529813	THSD7A	Q9UPZ6	1657 aa		6.1	□□□□□ -1.43
USP47-208	ENST00000529813	PEAK1	Q9H792	1746 aa		6.1	□□□□□ -1.43
USP47-208	ENST00000529813	MAP2	P11137	1827 aa	Known RBP	6.1	□□□□□ -1.43
USP47-208	ENST00000529813	NPHP1	O15259	732 aa		6.1	□□□□□ -1.43
USP47-208	ENST00000529813	POLD1	P28340	1107 aa		6.1	□□□□□ -1.43
USP47-208	ENST00000529813	SLC27A3	Q5K4L6	730 aa		6.1	□□□□□ -1.43
USP47-208	ENST00000529813	PRKRIP1	Q9H875	184 aa	Predicted RBP	6.1	□□□□□ -1.43
USP47-208	ENST00000529813	MYBBP1A	Q9BQG0	1328 aa	Known RBP	6.1	□□□□□ -1.43
USP47-208	ENST00000529813	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	6.1	□□□□□ -1.43
USP47-208	ENST00000529813	ERVV-2	B6SEH9	535 aa		6.1	□□□□□ -1.43
USP47-208	ENST00000529813	PIP4K2A	P48426	406 aa	Predicted RBP	6.1	□□□□□ -1.43
USP47-208	ENST00000529813	BTBD11	A6QL63	1104 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	FCHSD2	O94868	740 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	RIPK4	P57078	832 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	DNAJC10	Q8IXB1	793 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	RSPH6A	Q9H0K4	717 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	PARD3	Q8TEW0	1356 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	ITPK1	Q13572	414 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	BICDL1	Q6ZP65	573 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	IL17RE	Q8NFR9	667 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	NECTIN2	Q92692	538 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	SLC52A2	Q9HAB3	445 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	RTCB	Q9Y3I0	505 aa	Known RBP	6.09	□□□□□ -1.43
USP47-208	ENST00000529813	NPC1L1	Q9UHC9	1359 aa		6.09	□□□□□ -1.43
USP47-208	ENST00000529813	LRRC37A3	O60309	1634 aa		6.09	□□□□□ -1.44
USP47-208	ENST00000529813	RFC4	P35249	363 aa		6.08	□□□□□ -1.44
USP47-208	ENST00000529813	NKX1-1	Q15270	411 aa	Predicted RBP	6.08	□□□□□ -1.44
USP47-208	ENST00000529813	COL23A1	Q86Y22	540 aa	Predicted RBP	6.08	□□□□□ -1.44
USP47-208	ENST00000529813	LINC00116	Q8NCU8	138 aa		6.08	□□□□□ -1.44
USP47-208	ENST00000529813	PNN	Q9H307	717 aa	Known RBP	6.08	□□□□□ -1.44
USP47-208	ENST00000529813	ADAMTS8	Q9UP79	889 aa		6.08	□□□□□ -1.44
USP47-208	ENST00000529813	RGPD2	P0DJD1	1756 aa		6.08	□□□□□ -1.44
USP47-208	ENST00000529813	KCNQ3	O43525	872 aa		6.08	□□□□□ -1.44
USP47-208	ENST00000529813	ABCC6	O95255	1503 aa		6.08	□□□□□ -1.44
USP47-208	ENST00000529813	CCDC184	Q52MB2	194 aa		6.08	□□□□□ -1.44
USP47-208	ENST00000529813	TRAPPC3L	Q5T215	181 aa		6.08	□□□□□ -1.44
USP47-208	ENST00000529813	FAM177B	A6PVY3	158 aa		6.07	□□□□□ -1.44
USP47-208	ENST00000529813	EIF2S2	P20042	333 aa	Known RBP	6.07	□□□□□ -1.44
USP47-208	ENST00000529813	MTFR1L	Q9H019	292 aa		6.07	□□□□□ -1.44
USP47-208	ENST00000529813	MAP3K5	Q99683	1374 aa		6.07	□□□□□ -1.44
USP47-208	ENST00000529813	CRKL	P46109	303 aa	Known RBP	6.07	□□□□□ -1.44
USP47-208	ENST00000529813	GPR162	Q16538	588 aa		6.07	□□□□□ -1.44
USP47-208	ENST00000529813	ZNF428	Q96B54	188 aa		6.07	□□□□□ -1.44
USP47-208	ENST00000529813	ZNF496	Q96IT1	587 aa	Predicted RBP	6.07	□□□□□ -1.44
USP47-208	ENST00000529813	FHDC1	Q9C0D6	1143 aa	Predicted RBP	6.07	□□□□□ -1.44
USP47-208	ENST00000529813	PNPLA7	Q6ZV29	1317 aa		6.07	□□□□□ -1.44
USP47-208	ENST00000529813	BCL9	O00512	1426 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	ELL2	O00472	640 aa	Predicted RBP	6.06	□□□□□ -1.44
USP47-208	ENST00000529813	APAF1	O14727	1248 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	ZPR1	O75312	459 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	NFE2L2	Q16236	605 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	SLC4A9	Q96Q91	983 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	SRP68	Q9UHB9	627 aa	Known RBP	6.06	□□□□□ -1.44
USP47-208	ENST00000529813	TSPYL4	Q9UJ04	414 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	PARP4	Q9UKK3	1724 aa	Known RBP	6.06	□□□□□ -1.44
USP47-208	ENST00000529813	STARD3NL	O95772	234 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	ZNF790	Q6PG37	636 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	AMIGO3	Q86WK7	504 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	AKT1S1	Q96B36	256 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	TBC1D2B	Q9UPU7	963 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	KDR	P35968	1356 aa		6.06	□□□□□ -1.44
USP47-208	ENST00000529813	KDM6A	O15550	1401 aa	Predicted RBP	6.06	□□□□□ -1.44
USP47-208	ENST00000529813	A1BG	P04217	495 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	FMNL2	Q96PY5	1086 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	PRAMEF22	A3QJZ6	481 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	MYL6B	P14649	208 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	TAF7	Q15545	349 aa	Predicted RBP	6.05	□□□□□ -1.44
USP47-208	ENST00000529813	CCDC24	Q8N4L8	307 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	FLAD1	Q8NFF5	587 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	ARHGEF1	Q92888	912 aa	Known RBP	6.05	□□□□□ -1.44
USP47-208	ENST00000529813	ZBTB1	Q9Y2K1	713 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	MMP10	P09238	476 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	TMPO	P42166	694 aa	Known RBP	6.05	□□□□□ -1.44
USP47-208	ENST00000529813	RUNDC1	Q96C34	613 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	CCDC87	Q9NVE4	849 aa		6.05	□□□□□ -1.44
USP47-208	ENST00000529813	RGPD1	P0DJD0	1748 aa		6.04	□□□□□ -1.44
USP47-208	ENST00000529813	USP16	Q9Y5T5	823 aa		6.04	□□□□□ -1.44
USP47-208	ENST00000529813	HMGB2	P26583	209 aa	Known RBP	6.04	□□□□□ -1.44
USP47-208	ENST00000529813	USPL1	Q5W0Q7	1092 aa		6.04	□□□□□ -1.44
USP47-208	ENST00000529813	TCERG1	O14776	1098 aa	Known RBP	6.03	□□□□□ -1.44
USP47-208	ENST00000529813	RPS6KA4	O75676	772 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	ANXA1	P04083	346 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	GTF2E1	P29083	439 aa	Predicted RBP	6.03	□□□□□ -1.44
USP47-208	ENST00000529813	LMOD3	Q0VAK6	560 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	AIMP1	Q12904	312 aa	Known RBP	6.03	□□□□□ -1.44
USP47-208	ENST00000529813	SLC16A10	Q8TF71	515 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	SYT17	Q9BSW7	474 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	ZNF219	Q9P2Y4	722 aa	Predicted RBP	6.03	□□□□□ -1.44
USP47-208	ENST00000529813	FAM208A	Q9UK61	1670 aa	Known RBP	6.03	□□□□□ -1.44
USP47-208	ENST00000529813	PARP3	Q9Y6F1	533 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	USP54	Q70EL1	1684 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	SNRPA1	P09661	255 aa	Known RBP	6.03	□□□□□ -1.44
USP47-208	ENST00000529813	SSFA2	P28290	1259 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	KRT24	Q2M2I5	525 aa		6.03	□□□□□ -1.44
USP47-208	ENST00000529813	DIEXF	Q68CQ4	756 aa	Known RBP	6.03	□□□□□ -1.44
USP47-208	ENST00000529813	CYP19A1	P11511	503 aa	Predicted RBP	6.02	□□□□□ -1.45
USP47-208	ENST00000529813	PTGER2	P43116	358 aa		6.02	□□□□□ -1.45
USP47-208	ENST00000529813	FKBP8	Q14318	412 aa		6.02	□□□□□ -1.45
USP47-208	ENST00000529813	NLGN2	Q8NFZ4	835 aa		6.02	□□□□□ -1.45
USP47-208	ENST00000529813	DOT1L	Q8TEK3	1739 aa		6.02	□□□□□ -1.45

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms