RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 CCNL1Q9UK58 526 aaPredicted RBP15.17■□□□□ 0.02
USF1-208ENST00000528768 TUBGCP6Q96RT7 1819 aa15.17■□□□□ 0.02
USF1-208ENST00000528768 CD163L1Q9NR16 1453 aa15.16■□□□□ 0.02
USF1-208ENST00000528768 TCERG1O14776 1098 aaKnown RBP15.16■□□□□ 0.02
USF1-208ENST00000528768 DIAPH1O60610 1272 aaKnown RBP15.16■□□□□ 0.02
USF1-208ENST00000528768 COL23A1Q86Y22 540 aaPredicted RBP15.16■□□□□ 0.02
USF1-208ENST00000528768 DDX54Q8TDD1 881 aaKnown RBP15.16■□□□□ 0.02
USF1-208ENST00000528768 SYTL4Q96C24 671 aaPredicted RBP15.16■□□□□ 0.02
USF1-208ENST00000528768 CRBNQ96SW2 442 aa15.16■□□□□ 0.02
USF1-208ENST00000528768 LY75O60449 1722 aa15.16■□□□□ 0.02
USF1-208ENST00000528768 EDC4Q6P2E9 1401 aaKnown RBP15.16■□□□□ 0.02
USF1-208ENST00000528768 USP54Q70EL1 1684 aa15.16■□□□□ 0.02
USF1-208ENST00000528768 PRIM1P49642 420 aaKnown RBP15.15■□□□□ 0.02
USF1-208ENST00000528768 ZNF526Q8TF50 670 aaPredicted RBP15.15■□□□□ 0.02
USF1-208ENST00000528768 KIF20BQ96Q89 1820 aa15.15■□□□□ 0.02
USF1-208ENST00000528768 U2SURPO15042 1029 aaKnown RBP15.14■□□□□ 0.01
USF1-208ENST00000528768 PLIN1O60240 522 aa15.14■□□□□ 0.01
USF1-208ENST00000528768 FAM208AQ9UK61 1670 aaKnown RBP15.13■□□□□ 0.01
USF1-208ENST00000528768 KIF3CO14782 793 aa15.13■□□□□ 0.01
USF1-208ENST00000528768 CT47B1P0C2W7 299 aaPredicted RBP15.13■□□□□ 0.01
USF1-208ENST00000528768 MS4A1P11836 297 aa15.13■□□□□ 0.01
USF1-208ENST00000528768 CANXP27824 592 aaKnown RBP15.13■□□□□ 0.01
USF1-208ENST00000528768 AAMPQ13685 434 aa15.13■□□□□ 0.01
USF1-208ENST00000528768 TOMM70O94826 608 aa15.12■□□□□ 0.01
USF1-208ENST00000528768 PDE3AQ14432 1141 aa15.12■□□□□ 0.01
USF1-208ENST00000528768 NEUROD2Q15784 382 aa15.12■□□□□ 0.01
USF1-208ENST00000528768 LTN1O94822 1766 aa15.11■□□□□ 0.01
USF1-208ENST00000528768 KCNQ4P56696 695 aa15.11■□□□□ 0.01
USF1-208ENST00000528768 CENPQQ7L2Z9 268 aaPredicted RBP15.11■□□□□ 0.01
USF1-208ENST00000528768 DNAJC5GQ8N7S2 189 aa15.11■□□□□ 0.01
USF1-208ENST00000528768 MON2Q7Z3U7 1717 aa15.1■□□□□ 0.01
USF1-208ENST00000528768 FCHSD2O94868 740 aa15.1■□□□□ 0.01
USF1-208ENST00000528768 MSL1Q68DK7 614 aa15.1■□□□□ 0.01
USF1-208ENST00000528768 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.1■□□□□ 0.01
USF1-208ENST00000528768 ZCRB1Q8TBF4 217 aaKnown RBP15.1■□□□□ 0.01
USF1-208ENST00000528768 IP6K1Q92551 441 aa15.1■□□□□ 0.01
USF1-208ENST00000528768 COG3Q96JB2 828 aa15.1■□□□□ 0.01
USF1-208ENST00000528768 IL16Q14005 1332 aa15.1■□□□□ 0.01
USF1-208ENST00000528768 COL3A1P02461 1466 aaPredicted RBP15.09■□□□□ 0.01
USF1-208ENST00000528768 CALD1Q05682 793 aaKnown RBP15.09■□□□□ 0.01
USF1-208ENST00000528768 RRP7AQ9Y3A4 280 aaKnown RBP15.09■□□□□ 0.01
USF1-208ENST00000528768 IGSF1Q8N6C5 1336 aa15.09■□□□□ 0.01
USF1-208ENST00000528768 DOT1LQ8TEK3 1739 aa15.09■□□□□ 0.01
USF1-208ENST00000528768 SPINK5Q9NQ38 1064 aaPredicted RBP15.08■□□□□ 0
USF1-208ENST00000528768 TMPOP42166 694 aaKnown RBP15.07■□□□□ 0
USF1-208ENST00000528768 ERICH6Q7L0X2 663 aa15.07■□□□□ 0
USF1-208ENST00000528768 NME9Q86XW9 330 aa15.06■□□□□ 0
USF1-208ENST00000528768 PLEKHF1Q96S99 279 aa15.06■□□□□ 0
USF1-208ENST00000528768 CICQ96RK0 1608 aaPredicted RBP15.06■□□□□ 0
USF1-208ENST00000528768 POLKQ9UBT6 870 aa15.05■□□□□ -0
USF1-208ENST00000528768 C5P01031 1676 aa15.05■□□□□ -0
USF1-208ENST00000528768 PPM1GO15355 546 aaPredicted RBP15.04■□□□□ -0
USF1-208ENST00000528768 ANP32AP39687 249 aaKnown RBP15.04■□□□□ -0
USF1-208ENST00000528768 LMOD3Q0VAK6 560 aa15.04■□□□□ -0
USF1-208ENST00000528768 C20orf194Q5TEA3 1177 aa15.04■□□□□ -0
USF1-208ENST00000528768 JMYQ8N9B5 988 aa15.04■□□□□ -0
USF1-208ENST00000528768 RBM46Q8TBY0 533 aaKnown RBP15.04■□□□□ -0
USF1-208ENST00000528768 BCAR3O75815 825 aa15.03■□□□□ -0
USF1-208ENST00000528768 PRELPP51888 382 aa15.03■□□□□ -0
USF1-208ENST00000528768 RARSP54136 660 aaKnown RBP15.03■□□□□ -0
USF1-208ENST00000528768 RIPK4P57078 832 aa15.03■□□□□ -0
USF1-208ENST00000528768 SMARCC1Q92922 1105 aaPredicted RBP15.03■□□□□ -0
USF1-208ENST00000528768 KLRG1Q96E93 195 aa15.03■□□□□ -0
USF1-208ENST00000528768 AK7Q96M32 723 aa15.03■□□□□ -0
USF1-208ENST00000528768 FSTL1Q12841 308 aa15.02■□□□□ -0
USF1-208ENST00000528768 LTV1Q96GA3 475 aaPredicted RBP15.02■□□□□ -0
USF1-208ENST00000528768 PALLDQ8WX93 1383 aa15.01□□□□□ -0.01
USF1-208ENST00000528768 SSFA2P28290 1259 aa15.01□□□□□ -0.01
USF1-208ENST00000528768 C16orf71Q8IYS4 520 aaPredicted RBP15.01□□□□□ -0.01
USF1-208ENST00000528768 TNS4Q8IZW8 715 aa15.01□□□□□ -0.01
USF1-208ENST00000528768 WDR90Q96KV7 1748 aa15□□□□□ -0.01
USF1-208ENST00000528768 COL13A1Q5TAT6 717 aaPredicted RBP15□□□□□ -0.01
USF1-208ENST00000528768 FRAT1Q92837 279 aaPredicted RBP15□□□□□ -0.01
USF1-208ENST00000528768 ZNF428Q96B54 188 aa15□□□□□ -0.01
USF1-208ENST00000528768 KDM2BQ8NHM5 1336 aa14.99□□□□□ -0.01
USF1-208ENST00000528768 PRKAR2BP31323 418 aa14.99□□□□□ -0.01
USF1-208ENST00000528768 AMPHP49418 695 aa14.99□□□□□ -0.01
USF1-208ENST00000528768 TGFB2P61812 414 aa14.99□□□□□ -0.01
USF1-208ENST00000528768 RAPGEF4Q8WZA2 1011 aa14.99□□□□□ -0.01
USF1-208ENST00000528768 RSPH6AQ9H0K4 717 aa14.99□□□□□ -0.01
USF1-208ENST00000528768 TAF1LQ8IZX4 1826 aa14.99□□□□□ -0.01
USF1-208ENST00000528768 RTL1A6NKG5 1358 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 PCDH11XQ9BZA7 1347 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 PCDH11YQ9BZA8 1340 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 MEGF6O75095 1541 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 C4BP0C0L5 1744 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 IPO8O15397 1037 aaKnown RBP14.98□□□□□ -0.01
USF1-208ENST00000528768 HOXC9P31274 260 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 NFE2L2Q16236 605 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 ZKSCAN2Q63HK3 967 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 ANP32EQ9BTT0 268 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 TRIM35Q9UPQ4 493 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 PLEKHG2Q9H7P9 1386 aa14.98□□□□□ -0.01
USF1-208ENST00000528768 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.97□□□□□ -0.01
USF1-208ENST00000528768 IL13P35225 146 aa14.97□□□□□ -0.01
USF1-208ENST00000528768 CLUAP1Q96AJ1 413 aa14.97□□□□□ -0.01
USF1-208ENST00000528768 MAP3K19Q56UN5 1328 aa14.96□□□□□ -0.01
USF1-208ENST00000528768 CAPN15O75808 1086 aa14.96□□□□□ -0.01
USF1-208ENST00000528768 TATP17735 454 aaPredicted RBP14.96□□□□□ -0.01
USF1-208ENST00000528768 PDE4AP27815 886 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms