RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ZBED2Q9BTP6 218 aa10.06□□□□□ -0.8
CD44-228ENST00000528455 SLC24A3Q9HC58 644 aa10.06□□□□□ -0.8
CD44-228ENST00000528455 FAM198AQ9UFP1 575 aa10.06□□□□□ -0.8
CD44-228ENST00000528455 CD163L1Q9NR16 1453 aa10.05□□□□□ -0.8
CD44-228ENST00000528455 ADAMTS2O95450 1211 aa10.05□□□□□ -0.8
CD44-228ENST00000528455 RXRBP28702 533 aa10.05□□□□□ -0.8
CD44-228ENST00000528455 XPCQ01831 940 aaPredicted RBP10.05□□□□□ -0.8
CD44-228ENST00000528455 RALBP1Q15311 655 aa10.05□□□□□ -0.8
CD44-228ENST00000528455 NGLY1Q96IV0 654 aa10.05□□□□□ -0.8
CD44-228ENST00000528455 AFF2P51816 1311 aa10.05□□□□□ -0.8
CD44-228ENST00000528455 CGNL1Q0VF96 1302 aa10.05□□□□□ -0.8
CD44-228ENST00000528455 A0A1W2PP64 1363 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 TOPAZ1Q8N9V7 1692 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 IRF6O14896 467 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 FYB1O15117 783 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 PROX2Q3B8N5 592 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 POTEGQ6S5H5 508 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 KRT28Q7Z3Y7 464 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 TSKSQ9UJT2 592 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 TTC21AQ8NDW8 1320 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 PXDNQ92626 1479 aa10.04□□□□□ -0.8
CD44-228ENST00000528455 AKAP12Q02952 1782 aa10.03□□□□□ -0.8
CD44-228ENST00000528455 POTEMA6NI47 508 aa10.03□□□□□ -0.8
CD44-228ENST00000528455 TRIM6-TRIM34B2RNG4 842 aa10.03□□□□□ -0.8
CD44-228ENST00000528455 EDC4Q6P2E9 1401 aaKnown RBP10.03□□□□□ -0.8
CD44-228ENST00000528455 SLC4A5Q9BY07 1137 aa10.03□□□□□ -0.8
CD44-228ENST00000528455 PRKRIP1Q9H875 184 aaPredicted RBP10.03□□□□□ -0.8
CD44-228ENST00000528455 QTRT2Q9H974 415 aaKnown RBP10.03□□□□□ -0.8
CD44-228ENST00000528455 TTC21BQ7Z4L5 1316 aa10.03□□□□□ -0.8
CD44-228ENST00000528455 KIF1AQ12756 1690 aa10.02□□□□□ -0.8
CD44-228ENST00000528455 SSH2Q76I76 1423 aa10.02□□□□□ -0.81
CD44-228ENST00000528455 SPATA31A3Q5VYP0 1347 aa10.02□□□□□ -0.81
CD44-228ENST00000528455 NSD2O96028 1365 aa10.01□□□□□ -0.81
CD44-228ENST00000528455 USP6P35125 1406 aa10.01□□□□□ -0.81
CD44-228ENST00000528455 NSD3Q9BZ95 1437 aa10.01□□□□□ -0.81
CD44-228ENST00000528455 ONECUT3O60422 494 aaPredicted RBP10.01□□□□□ -0.81
CD44-228ENST00000528455 RBM6P78332 1123 aaKnown RBP10.01□□□□□ -0.81
CD44-228ENST00000528455 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.01□□□□□ -0.81
CD44-228ENST00000528455 AK7Q96M32 723 aa10.01□□□□□ -0.81
CD44-228ENST00000528455 USP21Q9UK80 565 aa10.01□□□□□ -0.81
CD44-228ENST00000528455 MON2Q7Z3U7 1717 aa10.01□□□□□ -0.81
CD44-228ENST00000528455 COL22A1Q8NFW1 1626 aaPredicted RBP10□□□□□ -0.81
CD44-228ENST00000528455 LSM11P83369 360 aaKnown RBP eCLIP10□□□□□ -0.81
CD44-228ENST00000528455 FAM161AQ3B820 660 aa10□□□□□ -0.81
CD44-228ENST00000528455 CC2D1BQ5T0F9 858 aaKnown RBP10□□□□□ -0.81
CD44-228ENST00000528455 MORC1Q86VD1 984 aa10□□□□□ -0.81
CD44-228ENST00000528455 NLRP13Q86W25 1043 aa10□□□□□ -0.81
CD44-228ENST00000528455 FNBP4Q8N3X1 1017 aaPredicted RBP10□□□□□ -0.81
CD44-228ENST00000528455 ABTB2Q8N961 1025 aa10□□□□□ -0.81
CD44-228ENST00000528455 CCDC102AQ96A19 550 aa10□□□□□ -0.81
CD44-228ENST00000528455 TRPC5Q9UL62 973 aaPredicted RBP10□□□□□ -0.81
CD44-228ENST00000528455 VPS9D1Q9Y2B5 631 aa10□□□□□ -0.81
CD44-228ENST00000528455 ADGRG1Q9Y653 693 aa10□□□□□ -0.81
CD44-228ENST00000528455 C3orf80F5H4A9 247 aa9.99□□□□□ -0.81
CD44-228ENST00000528455 CCER2I3L3R5 266 aa9.99□□□□□ -0.81
CD44-228ENST00000528455 COG3Q96JB2 828 aa9.99□□□□□ -0.81
CD44-228ENST00000528455 KRTAP3-3Q9BYR6 98 aa9.99□□□□□ -0.81
CD44-228ENST00000528455 KRTAP3-2Q9BYR7 98 aa9.99□□□□□ -0.81
CD44-228ENST00000528455 SBNO1A3KN83 1393 aa9.99□□□□□ -0.81
CD44-228ENST00000528455 USP31Q70CQ4 1352 aa9.99□□□□□ -0.81
CD44-228ENST00000528455 GGNBP2Q9H3C7 697 aa9.98□□□□□ -0.81
CD44-228ENST00000528455 KIAA1468Q9P260 1216 aa9.98□□□□□ -0.81
CD44-228ENST00000528455 PARD3Q8TEW0 1356 aa9.98□□□□□ -0.81
CD44-228ENST00000528455 TNS3Q68CZ2 1445 aa9.98□□□□□ -0.81
CD44-228ENST00000528455 CDK12Q9NYV4 1490 aaPredicted RBP9.98□□□□□ -0.81
CD44-228ENST00000528455 TK2O00142 265 aa9.97□□□□□ -0.81
CD44-228ENST00000528455 TRIM66O15016 1216 aa9.97□□□□□ -0.81
CD44-228ENST00000528455 PACS2Q86VP3 889 aa9.97□□□□□ -0.81
CD44-228ENST00000528455 NME9Q86XW9 330 aa9.97□□□□□ -0.81
CD44-228ENST00000528455 ARHGEF10O15013 1369 aa9.97□□□□□ -0.81
CD44-228ENST00000528455 PPP2R1AP30153 589 aa9.96□□□□□ -0.82
CD44-228ENST00000528455 CDAN1Q8IWY9 1227 aa9.96□□□□□ -0.82
CD44-228ENST00000528455 KCNH5Q8NCM2 988 aa9.96□□□□□ -0.82
CD44-228ENST00000528455 RABGEF1Q9UJ41 708 aa9.96□□□□□ -0.82
CD44-228ENST00000528455 MYBBP1AQ9BQG0 1328 aaKnown RBP9.96□□□□□ -0.82
CD44-228ENST00000528455 OATP04181 439 aa9.95□□□□□ -0.82
CD44-228ENST00000528455 METTL3Q86U44 580 aaKnown RBP9.95□□□□□ -0.82
CD44-228ENST00000528455 CABLES1Q8TDN4 633 aa9.95□□□□□ -0.82
CD44-228ENST00000528455 PXYLP1Q8TE99 480 aa9.95□□□□□ -0.82
CD44-228ENST00000528455 TATDN2Q93075 761 aa9.95□□□□□ -0.82
CD44-228ENST00000528455 PHOX2BQ99453 314 aa9.95□□□□□ -0.82
CD44-228ENST00000528455 EYA1Q99502 592 aa9.95□□□□□ -0.82
CD44-228ENST00000528455 MARF1Q9Y4F3 1742 aaKnown RBP9.95□□□□□ -0.82
CD44-228ENST00000528455 KIF20BQ96Q89 1820 aa9.95□□□□□ -0.82
CD44-228ENST00000528455 MAP2P11137 1827 aaKnown RBP9.94□□□□□ -0.82
CD44-228ENST00000528455 ANKRD26Q9UPS8 1709 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 NRKQ7Z2Y5 1582 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 BCL9LQ86UU0 1499 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 AATKQ6ZMQ8 1374 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 NBPF26B4DH59 902 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 CNGB1Q14028 1251 aaPredicted RBP9.94□□□□□ -0.82
CD44-228ENST00000528455 ADGRD1Q6QNK2 874 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 NUDT18Q6ZVK8 323 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 UNC5CLQ8IV45 518 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 GJD4Q96KN9 370 aaPredicted RBP9.94□□□□□ -0.82
CD44-228ENST00000528455 PNMA3Q9UL41 463 aa9.94□□□□□ -0.82
CD44-228ENST00000528455 TRPM3Q9HCF6 1732 aaPredicted RBP9.93□□□□□ -0.82
CD44-228ENST00000528455 ATRNO75882 1429 aa9.93□□□□□ -0.82
CD44-228ENST00000528455 BHMG1C9JSJ3 638 aaPredicted RBP9.93□□□□□ -0.82
CD44-228ENST00000528455 SMAPO00193 183 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms