RNA–Protein interactions for RNA: ENST00000527237.1

TRIM3-205, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 339 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-205ENST00000527237 ATG3Q9NT62 314 aa24.38■■□□□ 1.49
TRIM3-205ENST00000527237 ZEB1P37275 1124 aaPredicted RBP24.36■■□□□ 1.49
TRIM3-205ENST00000527237 AKAP4Q5JQC9 854 aa24.36■■□□□ 1.49
TRIM3-205ENST00000527237 RSPH6AQ9H0K4 717 aa24.36■■□□□ 1.49
TRIM3-205ENST00000527237 ATF5Q9Y2D1 282 aaPredicted RBP24.36■■□□□ 1.49
TRIM3-205ENST00000527237 LOC102724428A0A0B4J2F2 783 aa24.35■■□□□ 1.49
TRIM3-205ENST00000527237 SIK1P57059 783 aa24.35■■□□□ 1.49
TRIM3-205ENST00000527237 CABP4P57796 275 aa24.35■■□□□ 1.49
TRIM3-205ENST00000527237 ITPK1Q13572 414 aa24.34■■□□□ 1.49
TRIM3-205ENST00000527237 LGR6Q9HBX8 967 aa24.34■■□□□ 1.49
TRIM3-205ENST00000527237 TFCP2L1Q9NZI6 479 aa24.34■■□□□ 1.49
TRIM3-205ENST00000527237 PRKAR2BP31323 418 aa24.33■■□□□ 1.49
TRIM3-205ENST00000527237 PTGER2P43116 358 aa24.33■■□□□ 1.49
TRIM3-205ENST00000527237 AMIGO3Q86WK7 504 aa24.33■■□□□ 1.49
TRIM3-205ENST00000527237 LINC00116Q8NCU8 138 aa24.33■■□□□ 1.49
TRIM3-205ENST00000527237 SLC4A9Q96Q91 983 aa24.33■■□□□ 1.49
TRIM3-205ENST00000527237 KCPQ6ZWJ8 1503 aa24.32■■□□□ 1.48
TRIM3-205ENST00000527237 NFATC2IPQ8NCF5 419 aa24.32■■□□□ 1.48
TRIM3-205ENST00000527237 MAP3K5Q99683 1374 aa24.31■■□□□ 1.48
TRIM3-205ENST00000527237 RNMTO43148 476 aaKnown RBP24.31■■□□□ 1.48
TRIM3-205ENST00000527237 PHACTR3Q96KR7 559 aa24.31■■□□□ 1.48
TRIM3-205ENST00000527237 MTFR1LQ9H019 292 aa24.31■■□□□ 1.48
TRIM3-205ENST00000527237 U2AF1L5P0DN76 240 aaPredicted RBP24.3■■□□□ 1.48
TRIM3-205ENST00000527237 U2AF1Q01081 240 aaKnown RBP eCLIP24.3■■□□□ 1.48
TRIM3-205ENST00000527237 SMIM5Q71RC9 77 aa24.3■■□□□ 1.48
TRIM3-205ENST00000527237 NUDCQ9Y266 331 aa24.3■■□□□ 1.48
TRIM3-205ENST00000527237 ATP6V1AP38606 617 aa24.29■■□□□ 1.48
TRIM3-205ENST00000527237 SGIP1Q9BQI5 828 aa24.29■■□□□ 1.48
TRIM3-205ENST00000527237 COL23A1Q86Y22 540 aaPredicted RBP24.28■■□□□ 1.48
TRIM3-205ENST00000527237 RBM42Q9BTD8 480 aaKnown RBP24.28■■□□□ 1.48
TRIM3-205ENST00000527237 SLC52A2Q9HAB3 445 aa24.28■■□□□ 1.48
TRIM3-205ENST00000527237 PPP1R1BQ9UD71 204 aaPredicted RBP24.28■■□□□ 1.48
TRIM3-205ENST00000527237 GAS2L2Q8NHY3 880 aa24.26■■□□□ 1.47
TRIM3-205ENST00000527237 AK7Q96M32 723 aa24.26■■□□□ 1.47
TRIM3-205ENST00000527237 PTCD1O75127 700 aaKnown RBP24.25■■□□□ 1.47
TRIM3-205ENST00000527237 RALBP1Q15311 655 aa24.25■■□□□ 1.47
TRIM3-205ENST00000527237 PHF14O94880 888 aa24.24■■□□□ 1.47
TRIM3-205ENST00000527237 GNAT3A8MTJ3 354 aa24.23■■□□□ 1.47
TRIM3-205ENST00000527237 MSH5O43196 834 aa24.23■■□□□ 1.47
TRIM3-205ENST00000527237 SLC39A6Q13433 755 aa24.23■■□□□ 1.47
TRIM3-205ENST00000527237 KDM3BQ7LBC6 1761 aa24.22■■□□□ 1.47
TRIM3-205ENST00000527237 MYBBP1AQ9BQG0 1328 aaKnown RBP24.22■■□□□ 1.47
TRIM3-205ENST00000527237 MSL1Q68DK7 614 aa24.22■■□□□ 1.47
TRIM3-205ENST00000527237 IL17REQ8NFR9 667 aa24.22■■□□□ 1.47
TRIM3-205ENST00000527237 GNPATO15228 680 aa24.21■■□□□ 1.47
TRIM3-205ENST00000527237 FCHSD2O94868 740 aa24.21■■□□□ 1.47
TRIM3-205ENST00000527237 SLC16A10Q8TF71 515 aa24.21■■□□□ 1.47
TRIM3-205ENST00000527237 CEMIPQ8WUJ3 1361 aa24.2■■□□□ 1.46
TRIM3-205ENST00000527237 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.19■■□□□ 1.46
TRIM3-205ENST00000527237 LAMB4A4D0S4 1761 aa24.18■■□□□ 1.46
TRIM3-205ENST00000527237 CNTNAP4Q9C0A0 1308 aa24.17■■□□□ 1.46
TRIM3-205ENST00000527237 FHDC1Q9C0D6 1143 aaPredicted RBP24.17■■□□□ 1.46
TRIM3-205ENST00000527237 SSFA2P28290 1259 aa24.16■■□□□ 1.46
TRIM3-205ENST00000527237 ARXQ96QS3 562 aa24.16■■□□□ 1.46
TRIM3-205ENST00000527237 PLEKHF1Q96S99 279 aa24.16■■□□□ 1.46
TRIM3-205ENST00000527237 TEFQ10587 303 aa24.15■■□□□ 1.46
TRIM3-205ENST00000527237 DNAJC10Q8IXB1 793 aa24.15■■□□□ 1.46
TRIM3-205ENST00000527237 PRKRIP1Q9H875 184 aaPredicted RBP24.15■■□□□ 1.46
TRIM3-205ENST00000527237 DCTN1Q14203 1278 aa24.14■■□□□ 1.45
TRIM3-205ENST00000527237 MCM10Q7L590 875 aa24.14■■□□□ 1.45
TRIM3-205ENST00000527237 FLAD1Q8NFF5 587 aa24.14■■□□□ 1.45
TRIM3-205ENST00000527237 KIF13BQ9NQT8 1826 aa24.14■■□□□ 1.45
TRIM3-205ENST00000527237 HMGB2P26583 209 aaKnown RBP24.13■■□□□ 1.45
TRIM3-205ENST00000527237 CRKLP46109 303 aaKnown RBP24.13■■□□□ 1.45
TRIM3-205ENST00000527237 ZNF316A6NFI3 1004 aaPredicted RBP24.12■■□□□ 1.45
TRIM3-205ENST00000527237 KIAA1551Q9HCM1 1747 aa24.12■■□□□ 1.45
TRIM3-205ENST00000527237 POLD1P28340 1107 aa24.11■■□□□ 1.45
TRIM3-205ENST00000527237 RC3H1Q5TC82 1133 aaKnown RBP24.11■■□□□ 1.45
TRIM3-205ENST00000527237 RTCBQ9Y3I0 505 aaKnown RBP24.11■■□□□ 1.45
TRIM3-205ENST00000527237 SCN7AQ01118 1682 aa24.11■■□□□ 1.45
TRIM3-205ENST00000527237 KLHL34Q8N239 644 aa24.1■■□□□ 1.45
TRIM3-205ENST00000527237 SYT17Q9BSW7 474 aa24.1■■□□□ 1.45
TRIM3-205ENST00000527237 AFDNP55196 1824 aaKnown RBP24.1■■□□□ 1.45
TRIM3-205ENST00000527237 BCORQ6W2J9 1755 aa24.09■■□□□ 1.45
TRIM3-205ENST00000527237 KCNQ3O43525 872 aa24.09■■□□□ 1.45
TRIM3-205ENST00000527237 N4BP2Q86UW6 1770 aaPredicted RBP24.08■■□□□ 1.45
TRIM3-205ENST00000527237 HEG1Q9ULI3 1381 aa24.08■■□□□ 1.45
TRIM3-205ENST00000527237 RPS6KA4O75676 772 aa24.08■■□□□ 1.45
TRIM3-205ENST00000527237 INTS5Q6P9B9 1019 aaKnown RBP24.08■■□□□ 1.45
TRIM3-205ENST00000527237 ZNF790Q6PG37 636 aa24.08■■□□□ 1.45
TRIM3-205ENST00000527237 TTC5Q8N0Z6 440 aa24.08■■□□□ 1.45
TRIM3-205ENST00000527237 ZNF496Q96IT1 587 aaPredicted RBP24.08■■□□□ 1.45
TRIM3-205ENST00000527237 CHD4Q14839 1912 aa24.08■■□□□ 1.44
TRIM3-205ENST00000527237 RTF1Q92541 710 aaKnown RBP24.07■■□□□ 1.44
TRIM3-205ENST00000527237 MAPK8IP3Q9UPT6 1336 aa24.07■■□□□ 1.44
TRIM3-205ENST00000527237 CYP19A1P11511 503 aaPredicted RBP24.06■■□□□ 1.44
TRIM3-205ENST00000527237 NFE2L2Q16236 605 aa24.06■■□□□ 1.44
TRIM3-205ENST00000527237 ARHGEF1Q92888 912 aaKnown RBP24.06■■□□□ 1.44
TRIM3-205ENST00000527237 BTBD11A6QL63 1104 aa24.05■■□□□ 1.44
TRIM3-205ENST00000527237 NEFMP07197 916 aa24.05■■□□□ 1.44
TRIM3-205ENST00000527237 TRAPPC3LQ5T215 181 aa24.05■■□□□ 1.44
TRIM3-205ENST00000527237 THUMPD2Q9BTF0 503 aaKnown RBP24.05■■□□□ 1.44
TRIM3-205ENST00000527237 CCDC87Q9NVE4 849 aa24.05■■□□□ 1.44
TRIM3-205ENST00000527237 CCDC146Q8IYE0 955 aa24.04■■□□□ 1.44
TRIM3-205ENST00000527237 NLGN2Q8NFZ4 835 aa24.04■■□□□ 1.44
TRIM3-205ENST00000527237 ZBTB1Q9Y2K1 713 aa24.04■■□□□ 1.44
TRIM3-205ENST00000527237 BRCA1P38398 1863 aaKnown RBP24.04■■□□□ 1.44
TRIM3-205ENST00000527237 HTATSF1O43719 755 aaKnown RBP24.03■■□□□ 1.44
TRIM3-205ENST00000527237 ADRA2BP18089 450 aa24.03■■□□□ 1.44
TRIM3-205ENST00000527237 VSIG10Q8N0Z9 540 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms