RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 STK3Q13188 491 aa16.4■□□□□ 0.22
SYNPO-205ENST00000522122 THEMISQ8N1K5 641 aaPredicted RBP16.4■□□□□ 0.22
SYNPO-205ENST00000522122 MPNDQ8N594 471 aa16.4■□□□□ 0.22
SYNPO-205ENST00000522122 BCL11BQ9C0K0 894 aaPredicted RBP16.4■□□□□ 0.22
SYNPO-205ENST00000522122 A0A1W2PP64 1363 aa16.4■□□□□ 0.22
SYNPO-205ENST00000522122 SYCE3A1L190 88 aa16.4■□□□□ 0.22
SYNPO-205ENST00000522122 SMARCA5O60264 1052 aaPredicted RBP16.4■□□□□ 0.22
SYNPO-205ENST00000522122 SMC2O95347 1197 aa16.4■□□□□ 0.22
SYNPO-205ENST00000522122 CWC27Q6UX04 472 aaKnown RBP16.4■□□□□ 0.22
SYNPO-205ENST00000522122 SLC26A8Q96RN1 970 aa16.4■□□□□ 0.22
SYNPO-205ENST00000522122 BRMS1Q9HCU9 246 aa16.4■□□□□ 0.22
SYNPO-205ENST00000522122 EMILIN1Q9Y6C2 1016 aa16.4■□□□□ 0.22
SYNPO-205ENST00000522122 TATP17735 454 aaPredicted RBP16.39■□□□□ 0.21
SYNPO-205ENST00000522122 AACSQ86V21 672 aa16.39■□□□□ 0.21
SYNPO-205ENST00000522122 RBM10P98175 930 aaKnown RBP16.39■□□□□ 0.21
SYNPO-205ENST00000522122 JAKMIP1Q96N16 626 aaKnown RBP16.39■□□□□ 0.21
SYNPO-205ENST00000522122 DCTN1Q14203 1278 aa16.39■□□□□ 0.21
SYNPO-205ENST00000522122 PDRG1Q9NUG6 133 aa16.39■□□□□ 0.21
SYNPO-205ENST00000522122 ATP2B1P20020 1258 aa16.38■□□□□ 0.21
SYNPO-205ENST00000522122 ABCC1P33527 1531 aa16.38■□□□□ 0.21
SYNPO-205ENST00000522122 CCDC158Q5M9N0 1113 aa16.38■□□□□ 0.21
SYNPO-205ENST00000522122 MCM10Q7L590 875 aa16.38■□□□□ 0.21
SYNPO-205ENST00000522122 RAD21O60216 631 aa16.38■□□□□ 0.21
SYNPO-205ENST00000522122 IDI1Q13907 227 aa16.38■□□□□ 0.21
SYNPO-205ENST00000522122 MX1P20591 662 aa16.37■□□□□ 0.21
SYNPO-205ENST00000522122 ZSCAN23Q3MJ62 389 aa16.37■□□□□ 0.21
SYNPO-205ENST00000522122 WAPLQ7Z5K2 1190 aa16.37■□□□□ 0.21
SYNPO-205ENST00000522122 NME9Q86XW9 330 aa16.37■□□□□ 0.21
SYNPO-205ENST00000522122 JMYQ8N9B5 988 aa16.37■□□□□ 0.21
SYNPO-205ENST00000522122 PDIA4P13667 645 aaKnown RBP16.37■□□□□ 0.21
SYNPO-205ENST00000522122 MIS18AQ9NYP9 233 aa16.37■□□□□ 0.21
SYNPO-205ENST00000522122 RRAGDQ9NQL2 400 aaPredicted RBP16.37■□□□□ 0.21
SYNPO-205ENST00000522122 UPF3BQ9BZI7 483 aaKnown RBP16.36■□□□□ 0.21
SYNPO-205ENST00000522122 KDM4AO75164 1064 aa16.36■□□□□ 0.21
SYNPO-205ENST00000522122 MCM5P33992 734 aa16.36■□□□□ 0.21
SYNPO-205ENST00000522122 ME1P48163 572 aa16.36■□□□□ 0.21
SYNPO-205ENST00000522122 PKNOX2Q96KN3 472 aa16.36■□□□□ 0.21
SYNPO-205ENST00000522122 PPP6R1Q9UPN7 881 aa16.36■□□□□ 0.21
SYNPO-205ENST00000522122 KIF1BPQ96EK5 621 aa16.36■□□□□ 0.21
SYNPO-205ENST00000522122 GNAT3A8MTJ3 354 aa16.36■□□□□ 0.21
SYNPO-205ENST00000522122 ACBD3Q9H3P7 528 aa16.36■□□□□ 0.21
SYNPO-205ENST00000522122 ASXL2Q76L83 1435 aa16.35■□□□□ 0.21
SYNPO-205ENST00000522122 MADDQ8WXG6 1647 aa16.35■□□□□ 0.21
SYNPO-205ENST00000522122 HSP90B2PQ58FF3 399 aa16.35■□□□□ 0.21
SYNPO-205ENST00000522122 NUTM1Q86Y26 1132 aa16.35■□□□□ 0.21
SYNPO-205ENST00000522122 SPATA32Q96LK8 384 aa16.35■□□□□ 0.21
SYNPO-205ENST00000522122 E9PCH4 1651 aa16.34■□□□□ 0.21
SYNPO-205ENST00000522122 KRT32Q14532 448 aa16.34■□□□□ 0.21
SYNPO-205ENST00000522122 PROSER2Q86WR7 435 aaPredicted RBP16.34■□□□□ 0.21
SYNPO-205ENST00000522122 BTBD11A6QL63 1104 aa16.34■□□□□ 0.21
SYNPO-205ENST00000522122 CCP110O43303 1012 aa16.34■□□□□ 0.21
SYNPO-205ENST00000522122 NUP62CLQ9H1M0 184 aa16.34■□□□□ 0.21
SYNPO-205ENST00000522122 TTC39AQ5SRH9 613 aa16.34■□□□□ 0.21
SYNPO-205ENST00000522122 GLRX3O76003 335 aaKnown RBP16.34■□□□□ 0.21
SYNPO-205ENST00000522122 CFAP45Q9UL16 551 aa16.34■□□□□ 0.21
SYNPO-205ENST00000522122 WASLO00401 505 aaPredicted RBP16.33■□□□□ 0.21
SYNPO-205ENST00000522122 MYL6BP14649 208 aa16.33■□□□□ 0.21
SYNPO-205ENST00000522122 SETQ01105 290 aaPredicted RBP16.33■□□□□ 0.21
SYNPO-205ENST00000522122 TRIM34Q9BYJ4 488 aa16.33■□□□□ 0.21
SYNPO-205ENST00000522122 TET3O43151 1660 aa16.33■□□□□ 0.2
SYNPO-205ENST00000522122 TRIM35Q9UPQ4 493 aa16.33■□□□□ 0.2
SYNPO-205ENST00000522122 KIF6Q6ZMV9 814 aa16.33■□□□□ 0.2
SYNPO-205ENST00000522122 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.33■□□□□ 0.2
SYNPO-205ENST00000522122 DHX8Q14562 1220 aaKnown RBP16.33■□□□□ 0.2
SYNPO-205ENST00000522122 RAB11FIP3O75154 756 aa16.32■□□□□ 0.2
SYNPO-205ENST00000522122 CASTP20810 708 aaKnown RBP16.32■□□□□ 0.2
SYNPO-205ENST00000522122 FILIP1LQ4L180 1135 aa16.32■□□□□ 0.2
SYNPO-205ENST00000522122 RRP12Q5JTH9 1297 aaKnown RBP16.32■□□□□ 0.2
SYNPO-205ENST00000522122 ANKRD44Q8N8A2 993 aa16.32■□□□□ 0.2
SYNPO-205ENST00000522122 CNNM1Q9NRU3 951 aa16.32■□□□□ 0.2
SYNPO-205ENST00000522122 VAMP4O75379 141 aa16.32■□□□□ 0.2
SYNPO-205ENST00000522122 CABP4P57796 275 aa16.32■□□□□ 0.2
SYNPO-205ENST00000522122 RBM33Q96EV2 1170 aaKnown RBP16.32■□□□□ 0.2
SYNPO-205ENST00000522122 PDCL3Q9H2J4 239 aa16.32■□□□□ 0.2
SYNPO-205ENST00000522122 CCDC183Q5T5S1 534 aa16.31■□□□□ 0.2
SYNPO-205ENST00000522122 CCDC112Q8NEF3 446 aa16.31■□□□□ 0.2
SYNPO-205ENST00000522122 SPG7Q9UQ90 795 aa16.31■□□□□ 0.2
SYNPO-205ENST00000522122 SDSP20132 328 aa16.31■□□□□ 0.2
SYNPO-205ENST00000522122 NAP1L1P55209 391 aaKnown RBP16.31■□□□□ 0.2
SYNPO-205ENST00000522122 LRSAM1Q6UWE0 723 aa16.31■□□□□ 0.2
SYNPO-205ENST00000522122 ZBTB7BO15156 539 aaPredicted RBP16.31■□□□□ 0.2
SYNPO-205ENST00000522122 RBM42Q9BTD8 480 aaKnown RBP16.31■□□□□ 0.2
SYNPO-205ENST00000522122 KIF1BO60333 1816 aa16.3■□□□□ 0.2
SYNPO-205ENST00000522122 SERPINC1P01008 464 aa16.3■□□□□ 0.2
SYNPO-205ENST00000522122 RUFY1Q96T51 708 aa16.3■□□□□ 0.2
SYNPO-205ENST00000522122 FAM177BA6PVY3 158 aa16.3■□□□□ 0.2
SYNPO-205ENST00000522122 F6X3S4 739 aa16.3■□□□□ 0.2
SYNPO-205ENST00000522122 CLTCL1P53675 1640 aa16.3■□□□□ 0.2
SYNPO-205ENST00000522122 DCTPP1Q9H773 170 aa16.3■□□□□ 0.2
SYNPO-205ENST00000522122 CEP126Q9P2H0 1117 aa16.3■□□□□ 0.2
SYNPO-205ENST00000522122 HS1BP3Q53T59 392 aa16.29■□□□□ 0.2
SYNPO-205ENST00000522122 TRIM22Q8IYM9 498 aa16.29■□□□□ 0.2
SYNPO-205ENST00000522122 CCDC57Q2TAC2 916 aa16.29■□□□□ 0.2
SYNPO-205ENST00000522122 RBM27Q9P2N5 1060 aaKnown RBP16.29■□□□□ 0.2
SYNPO-205ENST00000522122 TAF7Q15545 349 aaPredicted RBP16.29■□□□□ 0.2
SYNPO-205ENST00000522122 MAP3K11Q16584 847 aa16.29■□□□□ 0.2
SYNPO-205ENST00000522122 FERMT3Q86UX7 667 aa16.29■□□□□ 0.2
SYNPO-205ENST00000522122 CTNNA3Q9UI47 895 aa16.29■□□□□ 0.2
SYNPO-205ENST00000522122 SPHKAPQ2M3C7 1700 aa16.29■□□□□ 0.2
SYNPO-205ENST00000522122 CDC42BPBQ9Y5S2 1711 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms