RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 NCOA4Q13772 614 aa6.6□□□□□ -1.35
VPS13B-209ENST00000521559 TRIM22Q8IYM9 498 aa6.6□□□□□ -1.35
VPS13B-209ENST00000521559 FNBP4Q8N3X1 1017 aaPredicted RBP6.6□□□□□ -1.35
VPS13B-209ENST00000521559 RHBDD1Q8TEB9 315 aa6.6□□□□□ -1.35
VPS13B-209ENST00000521559 GAS2L1Q99501 681 aaPredicted RBP6.6□□□□□ -1.35
VPS13B-209ENST00000521559 FHDC1Q9C0D6 1143 aaPredicted RBP6.6□□□□□ -1.35
VPS13B-209ENST00000521559 ATP9BO43861 1147 aa6.59□□□□□ -1.35
VPS13B-209ENST00000521559 GTF2IP78347 998 aa6.59□□□□□ -1.35
VPS13B-209ENST00000521559 PSME1Q06323 249 aa6.59□□□□□ -1.35
VPS13B-209ENST00000521559 PPARGC1BQ86YN6 1023 aaKnown RBP6.59□□□□□ -1.35
VPS13B-209ENST00000521559 PLEKHM2Q8IWE5 1019 aa6.59□□□□□ -1.35
VPS13B-209ENST00000521559 COL25A1Q9BXS0 654 aaPredicted RBP6.59□□□□□ -1.35
VPS13B-209ENST00000521559 SCNN1DP51172 638 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 SMTNP53814 917 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 GPR161Q8N6U8 529 aaKnown RBP6.58□□□□□ -1.36
VPS13B-209ENST00000521559 ADAMTS19Q8TE59 1207 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 GLMNQ92990 594 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 CALR3Q96L12 384 aaKnown RBP6.58□□□□□ -1.36
VPS13B-209ENST00000521559 CNTNAP3BQ96NU0 1288 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 TRERF1Q96PN7 1200 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 SLC4A9Q96Q91 983 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 CNTNAP3Q9BZ76 1288 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 PCDHGA11Q9Y5H2 935 aa6.58□□□□□ -1.36
VPS13B-209ENST00000521559 CSB-PGBD3P0DP91 1061 aa6.57□□□□□ -1.36
VPS13B-209ENST00000521559 LBRQ14739 615 aaKnown RBP6.57□□□□□ -1.36
VPS13B-209ENST00000521559 C4orf17Q53FE4 359 aa6.57□□□□□ -1.36
VPS13B-209ENST00000521559 PGBD3Q8N328 593 aa6.57□□□□□ -1.36
VPS13B-209ENST00000521559 NIFKQ9BYG3 293 aaKnown RBP6.57□□□□□ -1.36
VPS13B-209ENST00000521559 RBM19Q9Y4C8 960 aaKnown RBP6.57□□□□□ -1.36
VPS13B-209ENST00000521559 USP17L3A6NCW0 530 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 USP17L4A6NCW7 530 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 CDK2AP1O14519 115 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 PHKA2P46019 1235 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 USP17L2Q6R6M4 530 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 TBC1D9Q6ZT07 1266 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 USP17L1Q7RTZ2 530 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 DEPDC4Q8N2C3 294 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 C1orf216Q8TAB5 229 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 ZNF837Q96EG3 531 aaPredicted RBP6.56□□□□□ -1.36
VPS13B-209ENST00000521559 NUCKS1Q9H1E3 243 aaKnown RBP6.56□□□□□ -1.36
VPS13B-209ENST00000521559 SERTAD1Q9UHV2 236 aa6.56□□□□□ -1.36
VPS13B-209ENST00000521559 A6NJY4 79 aa6.55□□□□□ -1.36
VPS13B-209ENST00000521559 TMEM229AB2RXF0 380 aa6.55□□□□□ -1.36
VPS13B-209ENST00000521559 STAU1O95793 577 aaKnown RBP6.55□□□□□ -1.36
VPS13B-209ENST00000521559 MTFR1Q15390 333 aa6.55□□□□□ -1.36
VPS13B-209ENST00000521559 DBN1Q16643 649 aa6.55□□□□□ -1.36
VPS13B-209ENST00000521559 EFHC2Q5JST6 749 aa6.55□□□□□ -1.36
VPS13B-209ENST00000521559 UCN2Q96RP3 112 aa6.55□□□□□ -1.36
VPS13B-209ENST00000521559 CUEDC1Q9NWM3 386 aaPredicted RBP6.55□□□□□ -1.36
VPS13B-209ENST00000521559 PHF24Q9UPV7 400 aa6.55□□□□□ -1.36
VPS13B-209ENST00000521559 PALM3A6NDB9 673 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-209ENST00000521559 LARGE2Q8N3Y3 721 aa6.54□□□□□ -1.36
VPS13B-209ENST00000521559 DNAAF2Q9NVR5 837 aaKnown RBP6.54□□□□□ -1.36
VPS13B-209ENST00000521559 TFIP11Q9UBB9 837 aaKnown RBP6.54□□□□□ -1.36
VPS13B-209ENST00000521559 MKRN1Q9UHC7 482 aaKnown RBP6.54□□□□□ -1.36
VPS13B-209ENST00000521559 NSFL1CQ9UNZ2 370 aaKnown RBP6.54□□□□□ -1.36
VPS13B-209ENST00000521559 MSX1P28360 303 aa6.53□□□□□ -1.36
VPS13B-209ENST00000521559 PLA2G4AP47712 749 aa6.53□□□□□ -1.36
VPS13B-209ENST00000521559 KRT76Q01546 638 aa6.53□□□□□ -1.36
VPS13B-209ENST00000521559 SRSF11Q05519 484 aaKnown RBP6.53□□□□□ -1.36
VPS13B-209ENST00000521559 NBPF1Q3BBV0 1214 aa6.53□□□□□ -1.36
VPS13B-209ENST00000521559 CCDC102BQ68D86 513 aa6.53□□□□□ -1.36
VPS13B-209ENST00000521559 GTPBP3Q969Y2 492 aaKnown RBP6.53□□□□□ -1.36
VPS13B-209ENST00000521559 CFHR5Q9BXR6 569 aa6.53□□□□□ -1.36
VPS13B-209ENST00000521559 GPAMQ9HCL2 828 aa6.53□□□□□ -1.36
VPS13B-209ENST00000521559 MBIPQ9NS73 344 aa6.53□□□□□ -1.36
VPS13B-209ENST00000521559 SLURP2P0DP57 97 aa6.52□□□□□ -1.37
VPS13B-209ENST00000521559 TATP17735 454 aaPredicted RBP6.52□□□□□ -1.37
VPS13B-209ENST00000521559 RNFT1Q5M7Z0 435 aa6.52□□□□□ -1.37
VPS13B-209ENST00000521559 OGFOD1Q8N543 542 aa6.52□□□□□ -1.37
VPS13B-209ENST00000521559 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS13B-209ENST00000521559 TPCN2Q8NHX9 752 aa6.52□□□□□ -1.37
VPS13B-209ENST00000521559 AIDAQ96BJ3 306 aa6.52□□□□□ -1.37
VPS13B-209ENST00000521559 ZNF358Q9NW07 568 aa6.52□□□□□ -1.37
VPS13B-209ENST00000521559 CABP1Q9NZU7 370 aa6.52□□□□□ -1.37
VPS13B-209ENST00000521559 M0R2N6 131 aa6.51□□□□□ -1.37
VPS13B-209ENST00000521559 LORP23490 312 aaPredicted RBP6.51□□□□□ -1.37
VPS13B-209ENST00000521559 FIGNL1Q6PIW4 674 aa6.51□□□□□ -1.37
VPS13B-209ENST00000521559 LARP1Q6PKG0 1096 aaKnown RBP6.51□□□□□ -1.37
VPS13B-209ENST00000521559 PPP1R12CQ9BZL4 782 aa6.51□□□□□ -1.37
VPS13B-209ENST00000521559 CRISPLD1Q9H336 500 aa6.51□□□□□ -1.37
VPS13B-209ENST00000521559 ZDHHC3Q9NYG2 299 aa6.51□□□□□ -1.37
VPS13B-209ENST00000521559 SCHIP1Q9P0W5 487 aaPredicted RBP6.51□□□□□ -1.37
VPS13B-209ENST00000521559 CHMP3Q9Y3E7 222 aa6.51□□□□□ -1.37
VPS13B-209ENST00000521559 MAFBQ9Y5Q3 323 aaPredicted RBP6.51□□□□□ -1.37
VPS13B-209ENST00000521559 ZBTB7BO15156 539 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-209ENST00000521559 ADAMTS2O95450 1211 aa6.5□□□□□ -1.37
VPS13B-209ENST00000521559 RASA1P20936 1047 aa6.5□□□□□ -1.37
VPS13B-209ENST00000521559 CLDN10P78369 228 aa6.5□□□□□ -1.37
VPS13B-209ENST00000521559 NLRP8Q86W28 1048 aa6.5□□□□□ -1.37
VPS13B-209ENST00000521559 SIX5Q8N196 739 aa6.5□□□□□ -1.37
VPS13B-209ENST00000521559 RUBCNLQ9H714 662 aa6.5□□□□□ -1.37
VPS13B-209ENST00000521559 ZNF777Q9ULD5 760 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-209ENST00000521559 IQSEC3Q9UPP2 1182 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-209ENST00000521559 GPR25O00155 361 aa6.49□□□□□ -1.37
VPS13B-209ENST00000521559 MX2P20592 715 aa6.49□□□□□ -1.37
VPS13B-209ENST00000521559 MAP2K3P46734 347 aa6.49□□□□□ -1.37
VPS13B-209ENST00000521559 MAP3K10Q02779 954 aa6.49□□□□□ -1.37
VPS13B-209ENST00000521559 GAS6Q14393 721 aa6.49□□□□□ -1.37
VPS13B-209ENST00000521559 ARSJQ5FYB0 599 aaPredicted RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms