RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-208ENST00000520561 RCAN3Q9UKA8 241 aa11.58□□□□□ -0.56
CSMD1-208ENST00000520561 BTBD11A6QL63 1104 aa11.57□□□□□ -0.56
CSMD1-208ENST00000520561 CABP4P57796 275 aa11.57□□□□□ -0.56
CSMD1-208ENST00000520561 EXOSC9Q06265 439 aaKnown RBP11.57□□□□□ -0.56
CSMD1-208ENST00000520561 ERVV-2B6SEH9 535 aa11.56□□□□□ -0.56
CSMD1-208ENST00000520561 RBM6P78332 1123 aaKnown RBP11.55□□□□□ -0.56
CSMD1-208ENST00000520561 TTC5Q8N0Z6 440 aa11.55□□□□□ -0.56
CSMD1-208ENST00000520561 TMOD3Q9NYL9 352 aa11.55□□□□□ -0.56
CSMD1-208ENST00000520561 MIS18AQ9NYP9 233 aa11.55□□□□□ -0.56
CSMD1-208ENST00000520561 PAPPAQ13219 1627 aa11.55□□□□□ -0.56
CSMD1-208ENST00000520561 TWISTNBQ3B726 338 aaPredicted RBP11.54□□□□□ -0.56
CSMD1-208ENST00000520561 SEPT12Q8IYM1 358 aa11.54□□□□□ -0.56
CSMD1-208ENST00000520561 MARCH10Q8NA82 808 aaPredicted RBP11.54□□□□□ -0.56
CSMD1-208ENST00000520561 ZNF428Q96B54 188 aa11.54□□□□□ -0.56
CSMD1-208ENST00000520561 SOS1Q07889 1333 aaPredicted RBP11.54□□□□□ -0.56
CSMD1-208ENST00000520561 ONECUT3O60422 494 aaPredicted RBP11.53□□□□□ -0.56
CSMD1-208ENST00000520561 NEFLP07196 543 aa11.53□□□□□ -0.56
CSMD1-208ENST00000520561 NFATC2IPQ8NCF5 419 aa11.53□□□□□ -0.56
CSMD1-208ENST00000520561 ITGB4P16144 1822 aa11.53□□□□□ -0.56
CSMD1-208ENST00000520561 ZNF790Q6PG37 636 aa11.52□□□□□ -0.57
CSMD1-208ENST00000520561 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.52□□□□□ -0.57
CSMD1-208ENST00000520561 C8orf58Q8NAV2 365 aa11.52□□□□□ -0.57
CSMD1-208ENST00000520561 SYTL4Q96C24 671 aaPredicted RBP11.52□□□□□ -0.57
CSMD1-208ENST00000520561 SUPT16HQ9Y5B9 1047 aaKnown RBP11.52□□□□□ -0.57
CSMD1-208ENST00000520561 BCL9O00512 1426 aa11.52□□□□□ -0.57
CSMD1-208ENST00000520561 UBR2Q8IWV8 1755 aa11.51□□□□□ -0.57
CSMD1-208ENST00000520561 ELL2O00472 640 aaPredicted RBP11.51□□□□□ -0.57
CSMD1-208ENST00000520561 HOXB7P09629 217 aa11.51□□□□□ -0.57
CSMD1-208ENST00000520561 CANXP27824 592 aaKnown RBP11.51□□□□□ -0.57
CSMD1-208ENST00000520561 RXRBP28702 533 aa11.51□□□□□ -0.57
CSMD1-208ENST00000520561 RARSP54136 660 aaKnown RBP11.51□□□□□ -0.57
CSMD1-208ENST00000520561 EIF4A1P60842 406 aaKnown RBP11.51□□□□□ -0.57
CSMD1-208ENST00000520561 KRT24Q2M2I5 525 aa11.51□□□□□ -0.57
CSMD1-208ENST00000520561 TSPYL6Q8N831 410 aa11.51□□□□□ -0.57
CSMD1-208ENST00000520561 CHMP4AQ9BY43 222 aa11.51□□□□□ -0.57
CSMD1-208ENST00000520561 SMC4Q9NTJ3 1288 aa11.51□□□□□ -0.57
CSMD1-208ENST00000520561 NHSQ6T4R5 1651 aa11.51□□□□□ -0.57
CSMD1-208ENST00000520561 LAMB4A4D0S4 1761 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 KCNQ3O43525 872 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 VAMP4O75379 141 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 RRP1P56182 461 aaKnown RBP11.5□□□□□ -0.57
CSMD1-208ENST00000520561 SLC39A6Q13433 755 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 ALDH1L2Q3SY69 923 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 ACSBG1Q96GR2 724 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 FMNL2Q96PY5 1086 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 RGS12O14924 1447 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 KCPQ6ZWJ8 1503 aa11.5□□□□□ -0.57
CSMD1-208ENST00000520561 BRWD3Q6RI45 1802 aa11.49□□□□□ -0.57
CSMD1-208ENST00000520561 PRIM1P49642 420 aaKnown RBP11.49□□□□□ -0.57
CSMD1-208ENST00000520561 KRT27Q7Z3Y8 459 aa11.49□□□□□ -0.57
CSMD1-208ENST00000520561 ILDR1Q86SU0 546 aaPredicted RBP11.49□□□□□ -0.57
CSMD1-208ENST00000520561 PIGBQ92521 554 aa11.49□□□□□ -0.57
CSMD1-208ENST00000520561 BCL2L13Q9BXK5 485 aa11.49□□□□□ -0.57
CSMD1-208ENST00000520561 KIF16BQ96L93 1317 aa11.49□□□□□ -0.57
CSMD1-208ENST00000520561 C5P01031 1676 aa11.49□□□□□ -0.57
CSMD1-208ENST00000520561 BCAR3O75815 825 aa11.48□□□□□ -0.57
CSMD1-208ENST00000520561 HDGFL1Q5TGJ6 251 aa11.48□□□□□ -0.57
CSMD1-208ENST00000520561 CCDC30Q5VVM6 783 aa11.48□□□□□ -0.57
CSMD1-208ENST00000520561 SSH1Q8WYL5 1049 aa11.48□□□□□ -0.57
CSMD1-208ENST00000520561 STK31Q9BXU1 1019 aa11.48□□□□□ -0.57
CSMD1-208ENST00000520561 RNF123Q5XPI4 1314 aa11.48□□□□□ -0.57
CSMD1-208ENST00000520561 HEG1Q9ULI3 1381 aa11.48□□□□□ -0.57
CSMD1-208ENST00000520561 GIGYF1O75420 1035 aaPredicted RBP11.47□□□□□ -0.57
CSMD1-208ENST00000520561 ZNF496Q96IT1 587 aaPredicted RBP11.47□□□□□ -0.57
CSMD1-208ENST00000520561 RGS17Q9UGC6 210 aaPredicted RBP11.47□□□□□ -0.57
CSMD1-208ENST00000520561 SNRPA1P09661 255 aaKnown RBP11.46□□□□□ -0.57
CSMD1-208ENST00000520561 POTEAQ6S8J7 498 aa11.46□□□□□ -0.57
CSMD1-208ENST00000520561 FRAT1Q92837 279 aaPredicted RBP11.46□□□□□ -0.57
CSMD1-208ENST00000520561 SMARCC1Q92922 1105 aaPredicted RBP11.46□□□□□ -0.57
CSMD1-208ENST00000520561 ATG3Q9NT62 314 aa11.46□□□□□ -0.57
CSMD1-208ENST00000520561 PALLDQ8WX93 1383 aa11.45□□□□□ -0.58
CSMD1-208ENST00000520561 BTAF1O14981 1849 aa11.45□□□□□ -0.58
CSMD1-208ENST00000520561 SBF2Q86WG5 1849 aa11.45□□□□□ -0.58
CSMD1-208ENST00000520561 TCERG1O14776 1098 aaKnown RBP11.45□□□□□ -0.58
CSMD1-208ENST00000520561 IPO8O15397 1037 aaKnown RBP11.45□□□□□ -0.58
CSMD1-208ENST00000520561 PTCD1O75127 700 aaKnown RBP11.45□□□□□ -0.58
CSMD1-208ENST00000520561 EIF2S2P20042 333 aaKnown RBP11.45□□□□□ -0.58
CSMD1-208ENST00000520561 BRPF1P55201 1214 aaPredicted RBP11.45□□□□□ -0.58
CSMD1-208ENST00000520561 FAM196AQ6ZSG2 479 aa11.45□□□□□ -0.58
CSMD1-208ENST00000520561 VSIG10Q8N0Z9 540 aa11.45□□□□□ -0.58
CSMD1-208ENST00000520561 MRPL50Q8N5N7 158 aaKnown RBP11.45□□□□□ -0.58
CSMD1-208ENST00000520561 RBM42Q9BTD8 480 aaKnown RBP11.45□□□□□ -0.58
CSMD1-208ENST00000520561 ASAP1Q9ULH1 1129 aa11.45□□□□□ -0.58
CSMD1-208ENST00000520561 KAT6BQ8WYB5 2073 aa11.44□□□□□ -0.58
CSMD1-208ENST00000520561 FAM182BQ5T319 152 aa11.44□□□□□ -0.58
CSMD1-208ENST00000520561 ZKSCAN2Q63HK3 967 aa11.44□□□□□ -0.58
CSMD1-208ENST00000520561 NECTIN2Q92692 538 aa11.44□□□□□ -0.58
CSMD1-208ENST00000520561 CICQ96RK0 1608 aaPredicted RBP11.44□□□□□ -0.58
CSMD1-208ENST00000520561 ERBB4Q15303 1308 aa11.43□□□□□ -0.58
CSMD1-208ENST00000520561 PRAMEF22A3QJZ6 481 aa11.43□□□□□ -0.58
CSMD1-208ENST00000520561 KCNQ2O43526 872 aa11.43□□□□□ -0.58
CSMD1-208ENST00000520561 PLIN1O60240 522 aa11.43□□□□□ -0.58
CSMD1-208ENST00000520561 SLC4A2P04920 1241 aa11.43□□□□□ -0.58
CSMD1-208ENST00000520561 MS4A1P11836 297 aa11.43□□□□□ -0.58
CSMD1-208ENST00000520561 FTSJ3Q8IY81 847 aaKnown RBP11.43□□□□□ -0.58
CSMD1-208ENST00000520561 TEX13AQ9BXU3 409 aaPredicted RBP11.43□□□□□ -0.58
CSMD1-208ENST00000520561 CHPF2Q9P2E5 772 aa11.43□□□□□ -0.58
CSMD1-208ENST00000520561 DBF4Q9UBU7 674 aaPredicted RBP11.43□□□□□ -0.58
CSMD1-208ENST00000520561 TJP1Q07157 1748 aa11.43□□□□□ -0.58
CSMD1-208ENST00000520561 PTPRCP08575 1304 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms