RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 TMEM164Q5U3C3 297 aa12.26□□□□□ -0.45
SDCBP-208ENST00000520228 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.26□□□□□ -0.45
SDCBP-208ENST00000520228 FAM200AQ8TCP9 573 aa12.26□□□□□ -0.45
SDCBP-208ENST00000520228 XAGE2Q96GT9 111 aa12.26□□□□□ -0.45
SDCBP-208ENST00000520228 TSEN34Q9BSV6 310 aaKnown RBP12.26□□□□□ -0.45
SDCBP-208ENST00000520228 ARHGEF10LQ9HCE6 1279 aa12.26□□□□□ -0.45
SDCBP-208ENST00000520228 HRH3Q9Y5N1 445 aa12.26□□□□□ -0.45
SDCBP-208ENST00000520228 A0A1W2PRU2 124 aa12.25□□□□□ -0.45
SDCBP-208ENST00000520228 SFI1A8K8P3 1242 aa12.25□□□□□ -0.45
SDCBP-208ENST00000520228 M0R2N6 131 aa12.25□□□□□ -0.45
SDCBP-208ENST00000520228 IL2RAP01589 272 aa12.25□□□□□ -0.45
SDCBP-208ENST00000520228 RELBQ01201 579 aa12.25□□□□□ -0.45
SDCBP-208ENST00000520228 RAB6BQ9NRW1 208 aa12.25□□□□□ -0.45
SDCBP-208ENST00000520228 ZNF358Q9NW07 568 aa12.25□□□□□ -0.45
SDCBP-208ENST00000520228 RSF1Q96T23 1441 aaPredicted RBP12.25□□□□□ -0.45
SDCBP-208ENST00000520228 CSB-PGBD3P0DP91 1061 aa12.24□□□□□ -0.45
SDCBP-208ENST00000520228 CLN3Q13286 438 aa12.24□□□□□ -0.45
SDCBP-208ENST00000520228 ESCO1Q5FWF5 840 aa12.24□□□□□ -0.45
SDCBP-208ENST00000520228 HOMEZQ8IX15 550 aa12.24□□□□□ -0.45
SDCBP-208ENST00000520228 LINC00528Q8N1L1 170 aa12.24□□□□□ -0.45
SDCBP-208ENST00000520228 SLC4A9Q96Q91 983 aa12.24□□□□□ -0.45
SDCBP-208ENST00000520228 USTQ9Y2C2 406 aa12.24□□□□□ -0.45
SDCBP-208ENST00000520228 MRPL14Q6P1L8 145 aaKnown RBP12.23□□□□□ -0.45
SDCBP-208ENST00000520228 ESYT1Q9BSJ8 1104 aa12.23□□□□□ -0.45
SDCBP-208ENST00000520228 ZNF395Q9H8N7 513 aaPredicted RBP12.23□□□□□ -0.45
SDCBP-208ENST00000520228 AAASQ9NRG9 546 aa12.23□□□□□ -0.45
SDCBP-208ENST00000520228 AXIN1O15169 862 aa12.22□□□□□ -0.45
SDCBP-208ENST00000520228 SPINT1O43278 529 aa12.22□□□□□ -0.45
SDCBP-208ENST00000520228 TRIM46Q7Z4K8 759 aa12.22□□□□□ -0.45
SDCBP-208ENST00000520228 CNKSR1Q969H4 720 aa12.22□□□□□ -0.45
SDCBP-208ENST00000520228 BACH1O14867 736 aa12.2□□□□□ -0.46
SDCBP-208ENST00000520228 ST8SIA5O15466 376 aa12.2□□□□□ -0.46
SDCBP-208ENST00000520228 BMP1P13497 986 aa12.2□□□□□ -0.46
SDCBP-208ENST00000520228 EPHA4P54764 986 aa12.2□□□□□ -0.46
SDCBP-208ENST00000520228 SWI5Q1ZZU3 235 aa12.2□□□□□ -0.46
SDCBP-208ENST00000520228 RBM19Q9Y4C8 960 aaKnown RBP12.2□□□□□ -0.46
SDCBP-208ENST00000520228 CARNS1A5YM72 827 aa12.19□□□□□ -0.46
SDCBP-208ENST00000520228 MTFR1Q15390 333 aa12.19□□□□□ -0.46
SDCBP-208ENST00000520228 TSEN2Q8NCE0 465 aaKnown RBP12.19□□□□□ -0.46
SDCBP-208ENST00000520228 FHDC1Q9C0D6 1143 aaPredicted RBP12.19□□□□□ -0.46
SDCBP-208ENST00000520228 UPP2O95045 317 aa12.18□□□□□ -0.46
SDCBP-208ENST00000520228 SMTNP53814 917 aa12.18□□□□□ -0.46
SDCBP-208ENST00000520228 INSM2Q96T92 566 aaPredicted RBP12.18□□□□□ -0.46
SDCBP-208ENST00000520228 SLAIN2Q9P270 581 aa12.18□□□□□ -0.46
SDCBP-208ENST00000520228 SERTAD1Q9UHV2 236 aa12.18□□□□□ -0.46
SDCBP-208ENST00000520228 MEN1O00255 615 aa12.17□□□□□ -0.46
SDCBP-208ENST00000520228 CENPCQ03188 943 aa12.17□□□□□ -0.46
SDCBP-208ENST00000520228 CLP1Q92989 425 aaKnown RBP12.17□□□□□ -0.46
SDCBP-208ENST00000520228 DACH1Q9UI36 760 aa12.17□□□□□ -0.46
SDCBP-208ENST00000520228 BMP2P12643 396 aa12.16□□□□□ -0.46
SDCBP-208ENST00000520228 GPC1P35052 558 aa12.16□□□□□ -0.46
SDCBP-208ENST00000520228 RNF144AP50876 292 aaPredicted RBP12.16□□□□□ -0.46
SDCBP-208ENST00000520228 FOXK2Q01167 660 aa12.16□□□□□ -0.46
SDCBP-208ENST00000520228 FOXD4L5Q5VV16 416 aaPredicted RBP12.16□□□□□ -0.46
SDCBP-208ENST00000520228 PURBQ96QR8 312 aaKnown RBP12.16□□□□□ -0.46
SDCBP-208ENST00000520228 TRAIPQ9BWF2 469 aa12.16□□□□□ -0.46
SDCBP-208ENST00000520228 ATP13A2Q9NQ11 1180 aa12.16□□□□□ -0.46
SDCBP-208ENST00000520228 WIZO95785 1651 aa12.16□□□□□ -0.46
SDCBP-208ENST00000520228 A6NJY4 79 aa12.15□□□□□ -0.46
SDCBP-208ENST00000520228 LCE2BO14633 110 aa12.15□□□□□ -0.46
SDCBP-208ENST00000520228 CTSOP43234 321 aaPredicted RBP12.15□□□□□ -0.46
SDCBP-208ENST00000520228 PDE4CQ08493 712 aa12.15□□□□□ -0.46
SDCBP-208ENST00000520228 C6orf118Q5T5N4 469 aa12.15□□□□□ -0.46
SDCBP-208ENST00000520228 TNS4Q8IZW8 715 aa12.15□□□□□ -0.46
SDCBP-208ENST00000520228 NLRP3Q96P20 1036 aa12.15□□□□□ -0.46
SDCBP-208ENST00000520228 GRIP2Q9C0E4 1043 aa12.15□□□□□ -0.46
SDCBP-208ENST00000520228 SCARF1Q14162 830 aa12.14□□□□□ -0.47
SDCBP-208ENST00000520228 ZFP42Q96MM3 310 aa12.14□□□□□ -0.47
SDCBP-208ENST00000520228 SCHIP1Q9P0W5 487 aaPredicted RBP12.14□□□□□ -0.47
SDCBP-208ENST00000520228 IQSEC3Q9UPP2 1182 aaPredicted RBP12.14□□□□□ -0.47
SDCBP-208ENST00000520228 TLR1Q15399 786 aa12.13□□□□□ -0.47
SDCBP-208ENST00000520228 ZNF295-AS1Q8N0V1 137 aa12.13□□□□□ -0.47
SDCBP-208ENST00000520228 SOS2Q07890 1332 aaPredicted RBP12.12□□□□□ -0.47
SDCBP-208ENST00000520228 CDK2AP1O14519 115 aa12.12□□□□□ -0.47
SDCBP-208ENST00000520228 OCLNQ16625 522 aa12.12□□□□□ -0.47
SDCBP-208ENST00000520228 HINFPQ9BQA5 517 aa12.12□□□□□ -0.47
SDCBP-208ENST00000520228 USP3Q9Y6I4 520 aa12.12□□□□□ -0.47
SDCBP-208ENST00000520228 WEE1P30291 646 aa12.11□□□□□ -0.47
SDCBP-208ENST00000520228 RNF217Q8TC41 542 aa12.11□□□□□ -0.47
SDCBP-208ENST00000520228 POLMQ9NP87 494 aaPredicted RBP12.11□□□□□ -0.47
SDCBP-208ENST00000520228 C21orf2O43822 256 aa12.1□□□□□ -0.47
SDCBP-208ENST00000520228 LGR5O75473 907 aa12.1□□□□□ -0.47
SDCBP-208ENST00000520228 PPARGC1BQ86YN6 1023 aaKnown RBP12.1□□□□□ -0.47
SDCBP-208ENST00000520228 TSPAN10Q9H1Z9 355 aaPredicted RBP12.1□□□□□ -0.47
SDCBP-208ENST00000520228 Q6ZNB5 142 aa12.09□□□□□ -0.47
SDCBP-208ENST00000520228 ZSCAN10Q96SZ4 725 aaPredicted RBP12.09□□□□□ -0.47
SDCBP-208ENST00000520228 TTLL8A6PVC2 850 aa12.08□□□□□ -0.48
SDCBP-208ENST00000520228 PDIA4P13667 645 aaKnown RBP12.08□□□□□ -0.48
SDCBP-208ENST00000520228 PHLDB3Q6NSJ2 640 aa12.08□□□□□ -0.48
SDCBP-208ENST00000520228 NESP48681 1621 aa12.08□□□□□ -0.48
SDCBP-208ENST00000520228 SPATA31C2B4DYI2 1134 aa12.07□□□□□ -0.48
SDCBP-208ENST00000520228 PRMT3O60678 531 aa12.07□□□□□ -0.48
SDCBP-208ENST00000520228 IGFBP4P22692 258 aa12.07□□□□□ -0.48
SDCBP-208ENST00000520228 SSFA2P28290 1259 aa12.07□□□□□ -0.48
SDCBP-208ENST00000520228 POTEAQ6S8J7 498 aa12.07□□□□□ -0.48
SDCBP-208ENST00000520228 SLC9A9Q8IVB4 645 aa12.07□□□□□ -0.48
SDCBP-208ENST00000520228 GAS2L2Q8NHY3 880 aa12.07□□□□□ -0.48
SDCBP-208ENST00000520228 PRIMPOLQ96LW4 560 aa12.07□□□□□ -0.48
SDCBP-208ENST00000520228 CXXC1Q9P0U4 656 aaPredicted RBP12.07□□□□□ -0.48
SDCBP-208ENST00000520228 ERCC6Q03468 1493 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms