RNA–Protein interactions for RNA: ENST00000518140.5

SLIT3-204, Transcript of slit guidance ligand 3, humanhuman

TSL 1 (best)

Gene SLIT3, Length 2,090 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIT3-204ENST00000518140 KDM6AO15550 1401 aaPredicted RBP29.69■■■□□ 2.34
SLIT3-204ENST00000518140 TOM1O60784 492 aa29.68■■■□□ 2.34
SLIT3-204ENST00000518140 OVOS2A0A0G2JMS6 1433 aa29.67■■■□□ 2.34
SLIT3-204ENST00000518140 RGS12O14924 1447 aa29.67■■■□□ 2.34
SLIT3-204ENST00000518140 ZBTB7BO15156 539 aaPredicted RBP29.66■■■□□ 2.34
SLIT3-204ENST00000518140 VIRMAQ69YN4 1812 aaKnown RBP29.65■■■□□ 2.34
SLIT3-204ENST00000518140 CCDC30Q5VVM6 783 aa29.65■■■□□ 2.34
SLIT3-204ENST00000518140 MSH5O43196 834 aa29.65■■■□□ 2.34
SLIT3-204ENST00000518140 USP35Q9P2H5 1018 aa29.65■■■□□ 2.34
SLIT3-204ENST00000518140 ADAMTS7Q9UKP4 1686 aa29.64■■■□□ 2.34
SLIT3-204ENST00000518140 KDM3BQ7LBC6 1761 aa29.64■■■□□ 2.34
SLIT3-204ENST00000518140 NFATC2IPQ8NCF5 419 aa29.64■■■□□ 2.33
SLIT3-204ENST00000518140 STK31Q9BXU1 1019 aa29.63■■■□□ 2.33
SLIT3-204ENST00000518140 ZCRB1Q8TBF4 217 aaKnown RBP29.62■■■□□ 2.33
SLIT3-204ENST00000518140 SLC52A2Q9HAB3 445 aa29.62■■■□□ 2.33
SLIT3-204ENST00000518140 PTPRCP08575 1304 aa29.62■■■□□ 2.33
SLIT3-204ENST00000518140 UBAP1LF5GYI3 381 aa29.62■■■□□ 2.33
SLIT3-204ENST00000518140 IL2RBP14784 551 aa29.62■■■□□ 2.33
SLIT3-204ENST00000518140 EIF2S2P20042 333 aaKnown RBP29.62■■■□□ 2.33
SLIT3-204ENST00000518140 HDGFL1Q5TGJ6 251 aa29.62■■■□□ 2.33
SLIT3-204ENST00000518140 SOS1Q07889 1333 aaPredicted RBP29.62■■■□□ 2.33
SLIT3-204ENST00000518140 PKD1L3Q7Z443 1732 aa29.61■■■□□ 2.33
SLIT3-204ENST00000518140 PHLPP1O60346 1717 aa29.61■■■□□ 2.33
SLIT3-204ENST00000518140 COL16A1Q07092 1604 aaPredicted RBP29.61■■■□□ 2.33
SLIT3-204ENST00000518140 COL22A1Q8NFW1 1626 aaPredicted RBP29.61■■■□□ 2.33
SLIT3-204ENST00000518140 PLEKHG2Q9H7P9 1386 aa29.61■■■□□ 2.33
SLIT3-204ENST00000518140 SLC39A6Q13433 755 aa29.6■■■□□ 2.33
SLIT3-204ENST00000518140 DCAF5Q96JK2 942 aa29.6■■■□□ 2.33
SLIT3-204ENST00000518140 F6X3S4 739 aa29.6■■■□□ 2.33
SLIT3-204ENST00000518140 ADAMTS2O95450 1211 aa29.59■■■□□ 2.33
SLIT3-204ENST00000518140 INTS3Q68E01 1043 aaKnown RBP29.59■■■□□ 2.33
SLIT3-204ENST00000518140 SIPA1L3O60292 1781 aaPredicted RBP29.59■■■□□ 2.33
SLIT3-204ENST00000518140 PRAMEF22A3QJZ6 481 aa29.58■■■□□ 2.33
SLIT3-204ENST00000518140 RWDD1Q9H446 243 aaPredicted RBP29.58■■■□□ 2.33
SLIT3-204ENST00000518140 C1orf115Q9H7X2 142 aa29.58■■■□□ 2.33
SLIT3-204ENST00000518140 SCN11AQ9UI33 1791 aa29.57■■■□□ 2.32
SLIT3-204ENST00000518140 FLIIQ13045 1269 aa29.57■■■□□ 2.32
SLIT3-204ENST00000518140 GIGYF1O75420 1035 aaPredicted RBP29.56■■■□□ 2.32
SLIT3-204ENST00000518140 HEG1Q9ULI3 1381 aa29.56■■■□□ 2.32
SLIT3-204ENST00000518140 DDX54Q8TDD1 881 aaKnown RBP29.56■■■□□ 2.32
SLIT3-204ENST00000518140 NUTM2BA6NNL0 878 aaPredicted RBP29.55■■■□□ 2.32
SLIT3-204ENST00000518140 NUTM2EB1AL46 878 aaPredicted RBP29.55■■■□□ 2.32
SLIT3-204ENST00000518140 HOXB7P09629 217 aa29.55■■■□□ 2.32
SLIT3-204ENST00000518140 ZNF790Q6PG37 636 aa29.55■■■□□ 2.32
SLIT3-204ENST00000518140 NUTM2AQ8IVF1 878 aaPredicted RBP29.55■■■□□ 2.32
SLIT3-204ENST00000518140 PHAXQ9H814 394 aaKnown RBP29.55■■■□□ 2.32
SLIT3-204ENST00000518140 PCDH11XQ9BZA7 1347 aa29.54■■■□□ 2.32
SLIT3-204ENST00000518140 PCDH11YQ9BZA8 1340 aa29.54■■■□□ 2.32
SLIT3-204ENST00000518140 HSP90AB1P08238 724 aaKnown RBP29.54■■■□□ 2.32
SLIT3-204ENST00000518140 CHPF2Q9P2E5 772 aa29.54■■■□□ 2.32
SLIT3-204ENST00000518140 COL14A1Q05707 1796 aaKnown RBP29.54■■■□□ 2.32
SLIT3-204ENST00000518140 PARP4Q9UKK3 1724 aaKnown RBP29.53■■■□□ 2.32
SLIT3-204ENST00000518140 HDAC1Q13547 482 aaPredicted RBP29.52■■■□□ 2.32
SLIT3-204ENST00000518140 SLC4A10Q6U841 1118 aa29.52■■■□□ 2.32
SLIT3-204ENST00000518140 AEBP2Q6ZN18 517 aaPredicted RBP29.52■■■□□ 2.32
SLIT3-204ENST00000518140 ANXA1P04083 346 aa29.52■■■□□ 2.32
SLIT3-204ENST00000518140 FKBP5Q13451 457 aaPredicted RBP29.52■■■□□ 2.32
SLIT3-204ENST00000518140 RGS3P49796 1198 aa29.51■■■□□ 2.31
SLIT3-204ENST00000518140 CABP4P57796 275 aa29.51■■■□□ 2.31
SLIT3-204ENST00000518140 NKX1-1Q15270 411 aaPredicted RBP29.48■■■□□ 2.31
SLIT3-204ENST00000518140 ZNF496Q96IT1 587 aaPredicted RBP29.48■■■□□ 2.31
SLIT3-204ENST00000518140 CHMP4BQ9H444 224 aaKnown RBP29.48■■■□□ 2.31
SLIT3-204ENST00000518140 MRC1P22897 1456 aa29.48■■■□□ 2.31
SLIT3-204ENST00000518140 SIRT2Q8IXJ6 389 aa29.48■■■□□ 2.31
SLIT3-204ENST00000518140 PDZRN3Q9UPQ7 1066 aa29.47■■■□□ 2.31
SLIT3-204ENST00000518140 PROSER3Q2NL68 480 aa29.46■■■□□ 2.31
SLIT3-204ENST00000518140 MEIS3Q99687 375 aa29.46■■■□□ 2.31
SLIT3-204ENST00000518140 SHANK3Q9BYB0 1731 aa29.44■■■□□ 2.3
SLIT3-204ENST00000518140 CCT4P50991 539 aaKnown RBP29.43■■■□□ 2.3
SLIT3-204ENST00000518140 CACNA1FO60840 1977 aa29.43■■■□□ 2.3
SLIT3-204ENST00000518140 ERVV-2B6SEH9 535 aa29.42■■■□□ 2.3
SLIT3-204ENST00000518140 DBF4Q9UBU7 674 aaPredicted RBP29.42■■■□□ 2.3
SLIT3-204ENST00000518140 TTC5Q8N0Z6 440 aa29.41■■■□□ 2.3
SLIT3-204ENST00000518140 DISP2A7MBM2 1401 aa29.41■■■□□ 2.3
SLIT3-204ENST00000518140 SMC5Q8IY18 1101 aa29.41■■■□□ 2.3
SLIT3-204ENST00000518140 CHMP4AQ9BY43 222 aa29.41■■■□□ 2.3
SLIT3-204ENST00000518140 PDE4AP27815 886 aa29.4■■■□□ 2.3
SLIT3-204ENST00000518140 PDIA6Q15084 440 aa29.4■■■□□ 2.3
SLIT3-204ENST00000518140 USP16Q9Y5T5 823 aa29.4■■■□□ 2.3
SLIT3-204ENST00000518140 ERICH6Q7L0X2 663 aa29.39■■■□□ 2.3
SLIT3-204ENST00000518140 CERKQ8TCT0 537 aa29.39■■■□□ 2.3
SLIT3-204ENST00000518140 PLCH1Q4KWH8 1693 aa29.38■■■□□ 2.29
SLIT3-204ENST00000518140 PI4KAP2A4QPH2 592 aa29.37■■■□□ 2.29
SLIT3-204ENST00000518140 PI4KAP1Q8N8J0 262 aa29.37■■■□□ 2.29
SLIT3-204ENST00000518140 FMNL2Q96PY5 1086 aa29.37■■■□□ 2.29
SLIT3-204ENST00000518140 SNRPA1P09661 255 aaKnown RBP29.36■■■□□ 2.29
SLIT3-204ENST00000518140 SPATA31A1Q5TZJ5 1347 aa29.35■■■□□ 2.29
SLIT3-204ENST00000518140 C5P01031 1676 aa29.35■■■□□ 2.29
SLIT3-204ENST00000518140 BACH2Q9BYV9 841 aa29.35■■■□□ 2.29
SLIT3-204ENST00000518140 DDX21Q9NR30 783 aaKnown RBP eCLIP29.35■■■□□ 2.29
SLIT3-204ENST00000518140 ADCY9O60503 1353 aa29.34■■■□□ 2.29
SLIT3-204ENST00000518140 ATP10DQ9P241 1426 aa29.34■■■□□ 2.29
SLIT3-204ENST00000518140 CEP85Q6P2H3 762 aa29.33■■■□□ 2.29
SLIT3-204ENST00000518140 EXOC5O00471 708 aa29.33■■■□□ 2.29
SLIT3-204ENST00000518140 PIP4K2AP48426 406 aaPredicted RBP29.33■■■□□ 2.29
SLIT3-204ENST00000518140 HYPKQ9NX55 129 aa29.33■■■□□ 2.29
SLIT3-204ENST00000518140 ANKRD44Q8N8A2 993 aa29.32■■■□□ 2.28
SLIT3-204ENST00000518140 DNAAF4Q8WXU2 420 aa29.32■■■□□ 2.28
SLIT3-204ENST00000518140 MYL6BP14649 208 aa29.32■■■□□ 2.28
SLIT3-204ENST00000518140 NRAPQ86VF7 1730 aa29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 228.5 ms