RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 U2AF1Q01081 240 aaKnown RBP eCLIP15.44■□□□□ 0.06
VCAN-212ENST00000515397 AKAP4Q5JQC9 854 aa15.44■□□□□ 0.06
VCAN-212ENST00000515397 MSL1Q68DK7 614 aa15.44■□□□□ 0.06
VCAN-212ENST00000515397 PHACTR3Q96KR7 559 aa15.44■□□□□ 0.06
VCAN-212ENST00000515397 RNMTO43148 476 aaKnown RBP15.43■□□□□ 0.06
VCAN-212ENST00000515397 CASZ1Q86V15 1759 aa15.43■□□□□ 0.06
VCAN-212ENST00000515397 LY75O60449 1722 aa15.43■□□□□ 0.06
VCAN-212ENST00000515397 PRKAR2BP31323 418 aa15.42■□□□□ 0.06
VCAN-212ENST00000515397 SLC39A6Q13433 755 aa15.42■□□□□ 0.06
VCAN-212ENST00000515397 AK7Q96M32 723 aa15.42■□□□□ 0.06
VCAN-212ENST00000515397 SGIP1Q9BQI5 828 aa15.42■□□□□ 0.06
VCAN-212ENST00000515397 KLHL34Q8N239 644 aa15.41■□□□□ 0.06
VCAN-212ENST00000515397 NUDCQ9Y266 331 aa15.41■□□□□ 0.06
VCAN-212ENST00000515397 ARXQ96QS3 562 aa15.4■□□□□ 0.06
VCAN-212ENST00000515397 FHDC1Q9C0D6 1143 aaPredicted RBP15.4■□□□□ 0.06
VCAN-212ENST00000515397 RSPH6AQ9H0K4 717 aa15.4■□□□□ 0.06
VCAN-212ENST00000515397 GNPATO15228 680 aa15.39■□□□□ 0.05
VCAN-212ENST00000515397 IL17REQ8NFR9 667 aa15.39■□□□□ 0.05
VCAN-212ENST00000515397 SLC52A2Q9HAB3 445 aa15.39■□□□□ 0.05
VCAN-212ENST00000515397 PLEKHG2Q9H7P9 1386 aa15.38■□□□□ 0.05
VCAN-212ENST00000515397 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.38■□□□□ 0.05
VCAN-212ENST00000515397 SLC16A10Q8TF71 515 aa15.38■□□□□ 0.05
VCAN-212ENST00000515397 SYT17Q9BSW7 474 aa15.37■□□□□ 0.05
VCAN-212ENST00000515397 TUBGCP6Q96RT7 1819 aa15.36■□□□□ 0.05
VCAN-212ENST00000515397 GNAT3A8MTJ3 354 aa15.36■□□□□ 0.05
VCAN-212ENST00000515397 POLD1P28340 1107 aa15.36■□□□□ 0.05
VCAN-212ENST00000515397 GAS2L2Q8NHY3 880 aa15.36■□□□□ 0.05
VCAN-212ENST00000515397 DCTN1Q14203 1278 aa15.35■□□□□ 0.05
VCAN-212ENST00000515397 C5P01031 1676 aa15.35■□□□□ 0.05
VCAN-212ENST00000515397 FCHSD2O94868 740 aa15.34■□□□□ 0.05
VCAN-212ENST00000515397 ZEB1P37275 1124 aaPredicted RBP15.34■□□□□ 0.05
VCAN-212ENST00000515397 MCM10Q7L590 875 aa15.34■□□□□ 0.05
VCAN-212ENST00000515397 DNAJC10Q8IXB1 793 aa15.34■□□□□ 0.05
VCAN-212ENST00000515397 FLAD1Q8NFF5 587 aa15.34■□□□□ 0.05
VCAN-212ENST00000515397 MAP3K5Q99683 1374 aa15.34■□□□□ 0.05
VCAN-212ENST00000515397 C4BP0C0L5 1744 aa15.34■□□□□ 0.05
VCAN-212ENST00000515397 CRKLP46109 303 aaKnown RBP15.33■□□□□ 0.04
VCAN-212ENST00000515397 TEFQ10587 303 aa15.33■□□□□ 0.04
VCAN-212ENST00000515397 RTCBQ9Y3I0 505 aaKnown RBP15.33■□□□□ 0.04
VCAN-212ENST00000515397 TAF1LQ8IZX4 1826 aa15.33■□□□□ 0.04
VCAN-212ENST00000515397 KCNQ3O43525 872 aa15.32■□□□□ 0.04
VCAN-212ENST00000515397 SSFA2P28290 1259 aa15.32■□□□□ 0.04
VCAN-212ENST00000515397 RALBP1Q15311 655 aa15.32■□□□□ 0.04
VCAN-212ENST00000515397 TRAPPC3LQ5T215 181 aa15.32■□□□□ 0.04
VCAN-212ENST00000515397 ARHGEF1Q92888 912 aaKnown RBP15.32■□□□□ 0.04
VCAN-212ENST00000515397 NLGN2Q8NFZ4 835 aa15.31■□□□□ 0.04
VCAN-212ENST00000515397 RPS6KA4O75676 772 aa15.3■□□□□ 0.04
VCAN-212ENST00000515397 HMGB2P26583 209 aaKnown RBP15.3■□□□□ 0.04
VCAN-212ENST00000515397 RC3H1Q5TC82 1133 aaKnown RBP15.3■□□□□ 0.04
VCAN-212ENST00000515397 INTS5Q6P9B9 1019 aaKnown RBP15.3■□□□□ 0.04
VCAN-212ENST00000515397 SRP68Q9UHB9 627 aaKnown RBP15.3■□□□□ 0.04
VCAN-212ENST00000515397 SCN11AQ9UI33 1791 aa15.3■□□□□ 0.04
VCAN-212ENST00000515397 PELP1Q8IZL8 1130 aaKnown RBP15.29■□□□□ 0.04
VCAN-212ENST00000515397 RTF1Q92541 710 aaKnown RBP15.29■□□□□ 0.04
VCAN-212ENST00000515397 ZNF496Q96IT1 587 aaPredicted RBP15.29■□□□□ 0.04
VCAN-212ENST00000515397 PLEKHF1Q96S99 279 aa15.29■□□□□ 0.04
VCAN-212ENST00000515397 MIS18AQ9NYP9 233 aa15.29■□□□□ 0.04
VCAN-212ENST00000515397 CNTNAP4Q9C0A0 1308 aa15.28■□□□□ 0.04
VCAN-212ENST00000515397 BTBD11A6QL63 1104 aa15.28■□□□□ 0.04
VCAN-212ENST00000515397 CYP19A1P11511 503 aaPredicted RBP15.28■□□□□ 0.04
VCAN-212ENST00000515397 RFC4P35249 363 aa15.28■□□□□ 0.04
VCAN-212ENST00000515397 ZNF790Q6PG37 636 aa15.28■□□□□ 0.04
VCAN-212ENST00000515397 TTC5Q8N0Z6 440 aa15.28■□□□□ 0.04
VCAN-212ENST00000515397 THUMPD2Q9BTF0 503 aaKnown RBP15.28■□□□□ 0.04
VCAN-212ENST00000515397 WWC3Q9ULE0 1092 aa15.28■□□□□ 0.04
VCAN-212ENST00000515397 MYBBP1AQ9BQG0 1328 aaKnown RBP15.27■□□□□ 0.04
VCAN-212ENST00000515397 QSER1Q2KHR3 1735 aa15.27■□□□□ 0.04
VCAN-212ENST00000515397 DCAF8L1A6NGE4 600 aa15.27■□□□□ 0.04
VCAN-212ENST00000515397 UBR3Q6ZT12 1888 aa15.27■□□□□ 0.03
VCAN-212ENST00000515397 MMP10P09238 476 aa15.26■□□□□ 0.03
VCAN-212ENST00000515397 CANXP27824 592 aaKnown RBP15.26■□□□□ 0.03
VCAN-212ENST00000515397 CCDC87Q9NVE4 849 aa15.26■□□□□ 0.03
VCAN-212ENST00000515397 ZBTB1Q9Y2K1 713 aa15.26■□□□□ 0.03
VCAN-212ENST00000515397 MRC1P22897 1456 aa15.26■□□□□ 0.03
VCAN-212ENST00000515397 MYH14Q7Z406 1995 aaKnown RBP15.25■□□□□ 0.03
VCAN-212ENST00000515397 PRAMEF22A3QJZ6 481 aa15.25■□□□□ 0.03
VCAN-212ENST00000515397 NEFMP07197 916 aa15.25■□□□□ 0.03
VCAN-212ENST00000515397 GYS1P13807 737 aa15.25■□□□□ 0.03
VCAN-212ENST00000515397 CCDC146Q8IYE0 955 aa15.25■□□□□ 0.03
VCAN-212ENST00000515397 PRKRIP1Q9H875 184 aaPredicted RBP15.25■□□□□ 0.03
VCAN-212ENST00000515397 CEMIPQ8WUJ3 1361 aa15.24■□□□□ 0.03
VCAN-212ENST00000515397 KCPQ6ZWJ8 1503 aa15.24■□□□□ 0.03
VCAN-212ENST00000515397 ZNF316A6NFI3 1004 aaPredicted RBP15.24■□□□□ 0.03
VCAN-212ENST00000515397 PIP4K2AP48426 406 aaPredicted RBP15.24■□□□□ 0.03
VCAN-212ENST00000515397 NFE2L2Q16236 605 aa15.24■□□□□ 0.03
VCAN-212ENST00000515397 GPR162Q16538 588 aa15.24■□□□□ 0.03
VCAN-212ENST00000515397 RRP7AQ9Y3A4 280 aaKnown RBP15.24■□□□□ 0.03
VCAN-212ENST00000515397 UTRNP46939 3433 aa15.24■□□□□ 0.03
VCAN-212ENST00000515397 A1BGP04217 495 aa15.23■□□□□ 0.03
VCAN-212ENST00000515397 FKBP8Q14318 412 aa15.23■□□□□ 0.03
VCAN-212ENST00000515397 ZNF330Q9Y3S2 320 aaPredicted RBP15.23■□□□□ 0.03
VCAN-212ENST00000515397 ADAMTS7Q9UKP4 1686 aa15.22■□□□□ 0.03
VCAN-212ENST00000515397 MAPK8IP3Q9UPT6 1336 aa15.22■□□□□ 0.03
VCAN-212ENST00000515397 ADRA2BP18089 450 aa15.22■□□□□ 0.03
VCAN-212ENST00000515397 NEUROD2Q15784 382 aa15.22■□□□□ 0.03
VCAN-212ENST00000515397 USPL1Q5W0Q7 1092 aa15.22■□□□□ 0.03
VCAN-212ENST00000515397 VSIG10Q8N0Z9 540 aa15.22■□□□□ 0.03
VCAN-212ENST00000515397 NLGN1Q8N2Q7 840 aa15.22■□□□□ 0.03
VCAN-212ENST00000515397 FMNL2Q96PY5 1086 aa15.22■□□□□ 0.03
VCAN-212ENST00000515397 USP16Q9Y5T5 823 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms